Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:104834287-105614308

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prrg4 2 104830741 to 104849850 19109 - protein coding gene proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
Cpgi12004 2 104849034 to 104849981 947 CpG island CpG island 12004
Tssr25541 2 104849465 to 104849483 18 - TSS region transcription start site region 25541
Tssr25542 2 104849495 to 104849502 7 - TSS region transcription start site region 25542
Tssr25543 2 104849662 to 104849714 52 - TSS region transcription start site region 25543
Tssr25544 2 104849728 to 104849745 17 - TSS region transcription start site region 25544
Tssr25545 2 104849756 to 104849800 44 - TSS region transcription start site region 25545
Tssr25546 2 104849941 to 104849950 9 - TSS region transcription start site region 25546
Tssr25547 2 104850042 to 104850089 47 - TSS region transcription start site region 25547
Gm13887 2 104875202 to 104875545 343 + pseudogene predicted gene 13887
Cpgi12005 2 104886238 to 104886535 297 CpG island CpG island 12005
Tssr19225 2 104886318 to 104886344 26 + TSS region transcription start site region 19225
Ccdc73 2 104886324 to 104999737 113413 + protein coding gene coiled-coil domain containing 73
Tssr587 2 104919854 to 104919859 5 + TSS region transcription start site region 587
Gm10796 2 104994143 to 104997862 3719 unclassified gene predicted gene 10796
Eif3m 2 104999656 to 105017027 17371 - protein coding gene eukaryotic translation initiation factor 3, subunit M
Cpgi12006 2 105016572 to 105017495 923 CpG island CpG island 12006
Tssr25548 2 105017015 to 105017075 60 - TSS region transcription start site region 25548
Tssr19226 2 105017114 to 105017153 39 + TSS region transcription start site region 19226
Gm38521 2 105017118 to 105017906 788 + lncRNA gene predicted gene, 38521
Gm13888 2 105031857 to 105032167 310 - pseudogene predicted gene 13888
D2Dcr53 2 105035410 to 105035514 104 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 53
Wt1os 2 105076538 to 105126510 49972 - antisense lncRNA gene Wilms tumor 1 homolog, opposite strand
Gm11060 2 105092018 to 105093760 1742 + protein coding gene predicted gene 11060
Gm27715 2 105121792 to 105122051 259 - unclassified non-coding RNA gene predicted gene, 27715
Gm27538 2 105122188 to 105122481 293 - unclassified non-coding RNA gene predicted gene, 27538
Cpgi12007 2 105122908 to 105123310 402 CpG island CpG island 12007
Gm27636 2 105123062 to 105123183 121 - unclassified non-coding RNA gene predicted gene, 27636
Gm27308 2 105125222 to 105125454 232 - unclassified non-coding RNA gene predicted gene, 27308
Tssr19227 2 105126279 to 105126298 19 + TSS region transcription start site region 19227
Cpgi12008 2 105126281 to 105128234 1953 CpG island CpG island 12008
Tssr19228 2 105126308 to 105126322 14 + TSS region transcription start site region 19228
Tssr25549 2 105126353 to 105126381 28 - TSS region transcription start site region 25549
Tssr25550 2 105126388 to 105126429 41 - TSS region transcription start site region 25550
Tssr19229 2 105126479 to 105126484 5 + TSS region transcription start site region 19229
Tssr25551 2 105126502 to 105126515 13 - TSS region transcription start site region 25551
Tssr19230 2 105126505 to 105126516 11 + TSS region transcription start site region 19230
Tssr25552 2 105126526 to 105126543 17 - TSS region transcription start site region 25552
Wt1 2 105126529 to 105173614 47085 + protein coding gene Wilms tumor 1 homolog
Tssr25553 2 105126556 to 105126570 14 - TSS region transcription start site region 25553
Tssr19231 2 105126609 to 105126629 20 + TSS region transcription start site region 19231
Tssr19232 2 105126717 to 105126750 33 + TSS region transcription start site region 19232
Tssr19233 2 105126752 to 105126763 11 + TSS region transcription start site region 19233
Tssr19234 2 105126776 to 105126809 33 + TSS region transcription start site region 19234
Tssr19235 2 105126826 to 105126833 7 + TSS region transcription start site region 19235
Tssr19236 2 105127200 to 105127222 22 + TSS region transcription start site region 19236
Cpgi12009 2 105130713 to 105131113 400 CpG island CpG island 12009
Tssr19237 2 105130964 to 105130981 17 + TSS region transcription start site region 19237
Cpgi12010 2 105132878 to 105133601 723 CpG island CpG island 12010
Cpgi12011 2 105134354 to 105134586 232 CpG island CpG island 12011
Tssr19238 2 105160238 to 105160244 6 + TSS region transcription start site region 19238
4930415N12Rik 2 105161823 to 105162598 775 unclassified gene RIKEN cDNA 4930415N12 gene
Tssr19239 2 105162525 to 105162534 9 + TSS region transcription start site region 19239
Tssr19240 2 105162981 to 105162998 17 + TSS region transcription start site region 19240
Tssr19241 2 105163120 to 105163123 3 + TSS region transcription start site region 19241
Sluc31a 2 105184658 to 105184825 167 QTL susceptibility to lung cancer 31a
D2Mit99 2 105184658 to 105184825 167 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 99
Cpgi12012 2 105224218 to 105224694 476 CpG island CpG island 12012
Tssr19242 2 105224287 to 105224308 21 + TSS region transcription start site region 19242
Tssr19243 2 105224314 to 105224357 43 + TSS region transcription start site region 19243
Them7 2 105224320 to 105379796 155476 + protein coding gene thioesterase superfamily member 7
D2Mit387 2 105262287 to 105262412 125 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 387
Femwf4 2 105313078 to 105313225 147 QTL femur work to failure 4
D2Mit44 2 105313078 to 105313225 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 44
Hbnr5 2 105313225 to 31324555 -73988670 QTL Heligmosomoides bakeri nematode resistance 5
D2Mit442 2 105357510 to 105357636 126 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 442
Tssr19244 2 105372973 to 105373010 37 + TSS region transcription start site region 19244
Rcn1 2 105386291 to 105399319 13028 - protein coding gene reticulocalbin 1
Cpgi12013 2 105398640 to 105399715 1075 CpG island CpG island 12013
Tssr25554 2 105399208 to 105399243 35 - TSS region transcription start site region 25554
Tssr25555 2 105399249 to 105399275 26 - TSS region transcription start site region 25555
Tssr25556 2 105399286 to 105399300 14 - TSS region transcription start site region 25556
Tssr25557 2 105399308 to 105399315 7 - TSS region transcription start site region 25557
Tssr25558 2 105399355 to 105399358 3 - TSS region transcription start site region 25558
Tssr25559 2 105399372 to 105399379 7 - TSS region transcription start site region 25559
Tssr25560 2 105399390 to 105399421 31 - TSS region transcription start site region 25560
Tssr25561 2 105399594 to 105399642 48 - TSS region transcription start site region 25561
Tssr19245 2 105425960 to 105425963 3 + TSS region transcription start site region 19245
Tssr19246 2 105425978 to 105425983 5 + TSS region transcription start site region 19246
Tssr19247 2 105425993 to 105425999 6 + TSS region transcription start site region 19247
Gm39900 2 105429368 to 105441465 12097 + lncRNA gene predicted gene, 39900
4930527A07Rik 2 105476501 to 105477357 856 + lincRNA gene RIKEN cDNA 4930527A07 gene
D2Mit185 2 105495630 to 105495777 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 185
D2Dcr54 2 105495637 to 105495773 136 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 54
Pax6os1 2 105536080 to 105670330 134250 - antisense lncRNA gene paired box 6 opposite strand 1
Gm13890 2 105537093 to 105537482 389 - pseudogene predicted gene 13890
Rpl10-ps1 2 105554201 to 105554845 644 - pseudogene ribosomal protein L10, pseudogene 1
Gm35946 2 105611282 to 105620482 9200 + lncRNA gene predicted gene, 35946