Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:104634594-106164642

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cstf3 2 104590523 to 104665429 74906 + protein coding gene cleavage stimulation factor, 3' pre-RNA, subunit 3
Gm39897 2 104620372 to 104640011 19639 + lncRNA gene predicted gene, 39897
9330195I24Rik 2 104658583 to 104664739 6156 unclassified gene RIKEN cDNA 9330195I24 gene
Tssr25531 2 104676644 to 104676653 9 - TSS region transcription start site region 25531
Tcp11l1 2 104677764 to 104712169 34405 - protein coding gene t-complex 11 like 1
Cpgi11999 2 104681613 to 104681782 169 CpG island CpG island 11999
Cpgi12000 2 104685320 to 104685481 161 CpG island CpG island 12000
Gm6306 2 104710258 to 104712768 2510 + protein coding gene predicted gene 6306
Cpgi12001 2 104711583 to 104712606 1023 CpG island CpG island 12001
Tssr25532 2 104712122 to 104712180 58 - TSS region transcription start site region 25532
Tssr25533 2 104712639 to 104712650 11 - TSS region transcription start site region 25533
Pin1rt1 2 104713926 to 104716379 2453 - protein coding gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1, retrogene 1
Depdc7 2 104721784 to 104742801 21017 - protein coding gene DEP domain containing 7
Cpgi12002 2 104742318 to 104743127 809 CpG island CpG island 12002
Tssr25534 2 104742802 to 104742820 18 - TSS region transcription start site region 25534
Tssr25535 2 104742834 to 104742848 14 - TSS region transcription start site region 25535
Qser1 2 104754795 to 104816760 61965 - protein coding gene glutamine and serine rich 1
Tssr25536 2 104780582 to 104780586 4 - TSS region transcription start site region 25536
Tssr25537 2 104785744 to 104785746 2 - TSS region transcription start site region 25537
Cpgi12003 2 104815966 to 104817332 1366 CpG island CpG island 12003
2310047K21Rik 2 104816082 to 104818682 2600 unclassified gene RIKEN cDNA 2310047K21 gene
Tssr25538 2 104816742 to 104816792 50 - TSS region transcription start site region 25538
Tssr19221 2 104816870 to 104816925 55 + TSS region transcription start site region 19221
Tssr25539 2 104816941 to 104816955 14 - TSS region transcription start site region 25539
Tssr25540 2 104816969 to 104817009 40 - TSS region transcription start site region 25540
Tssr19222 2 104817032 to 104817071 39 + TSS region transcription start site region 19222
Gm39898 2 104818831 to 104819206 375 + lncRNA gene predicted gene, 39898
Gm13886 2 104820179 to 104820971 792 + pseudogene predicted gene 13886
Tssr19223 2 104820799 to 104820823 24 + TSS region transcription start site region 19223
Tssr19224 2 104821346 to 104821393 47 + TSS region transcription start site region 19224
Prrg4 2 104830741 to 104849850 19109 - protein coding gene proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
Cpgi12004 2 104849034 to 104849981 947 CpG island CpG island 12004
Tssr25541 2 104849465 to 104849483 18 - TSS region transcription start site region 25541
Tssr25542 2 104849495 to 104849502 7 - TSS region transcription start site region 25542
Tssr25543 2 104849662 to 104849714 52 - TSS region transcription start site region 25543
Tssr25544 2 104849728 to 104849745 17 - TSS region transcription start site region 25544
Tssr25545 2 104849756 to 104849800 44 - TSS region transcription start site region 25545
Tssr25546 2 104849941 to 104849950 9 - TSS region transcription start site region 25546
Tssr25547 2 104850042 to 104850089 47 - TSS region transcription start site region 25547
Gm13887 2 104875202 to 104875545 343 + pseudogene predicted gene 13887
Cpgi12005 2 104886238 to 104886535 297 CpG island CpG island 12005
Tssr19225 2 104886318 to 104886344 26 + TSS region transcription start site region 19225
Ccdc73 2 104886324 to 104999737 113413 + protein coding gene coiled-coil domain containing 73
Tssr587 2 104919854 to 104919859 5 + TSS region transcription start site region 587
Gm10796 2 104994143 to 104997862 3719 unclassified gene predicted gene 10796
Eif3m 2 104999656 to 105017027 17371 - protein coding gene eukaryotic translation initiation factor 3, subunit M
Cpgi12006 2 105016572 to 105017495 923 CpG island CpG island 12006
Tssr25548 2 105017015 to 105017075 60 - TSS region transcription start site region 25548
Tssr19226 2 105017114 to 105017153 39 + TSS region transcription start site region 19226
Gm38521 2 105017118 to 105017906 788 + lncRNA gene predicted gene, 38521
Gm13888 2 105031857 to 105032167 310 - pseudogene predicted gene 13888
D2Dcr53 2 105035410 to 105035514 104 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 53
Wt1os 2 105076538 to 105126510 49972 - antisense lncRNA gene Wilms tumor 1 homolog, opposite strand
Gm11060 2 105092018 to 105093760 1742 + protein coding gene predicted gene 11060
Gm27715 2 105121792 to 105122051 259 - unclassified non-coding RNA gene predicted gene, 27715
Gm27538 2 105122188 to 105122481 293 - unclassified non-coding RNA gene predicted gene, 27538
Cpgi12007 2 105122908 to 105123310 402 CpG island CpG island 12007
Gm27636 2 105123062 to 105123183 121 - unclassified non-coding RNA gene predicted gene, 27636
Gm27308 2 105125222 to 105125454 232 - unclassified non-coding RNA gene predicted gene, 27308
Tssr19227 2 105126279 to 105126298 19 + TSS region transcription start site region 19227
Cpgi12008 2 105126281 to 105128234 1953 CpG island CpG island 12008
Tssr19228 2 105126308 to 105126322 14 + TSS region transcription start site region 19228
Tssr25549 2 105126353 to 105126381 28 - TSS region transcription start site region 25549
Tssr25550 2 105126388 to 105126429 41 - TSS region transcription start site region 25550
Tssr19229 2 105126479 to 105126484 5 + TSS region transcription start site region 19229
Tssr25551 2 105126502 to 105126515 13 - TSS region transcription start site region 25551
Tssr19230 2 105126505 to 105126516 11 + TSS region transcription start site region 19230
Tssr25552 2 105126526 to 105126543 17 - TSS region transcription start site region 25552
Wt1 2 105126529 to 105173614 47085 + protein coding gene Wilms tumor 1 homolog
Tssr25553 2 105126556 to 105126570 14 - TSS region transcription start site region 25553
Tssr19231 2 105126609 to 105126629 20 + TSS region transcription start site region 19231
Tssr19232 2 105126717 to 105126750 33 + TSS region transcription start site region 19232
Tssr19233 2 105126752 to 105126763 11 + TSS region transcription start site region 19233
Tssr19234 2 105126776 to 105126809 33 + TSS region transcription start site region 19234
Tssr19235 2 105126826 to 105126833 7 + TSS region transcription start site region 19235
Tssr19236 2 105127200 to 105127222 22 + TSS region transcription start site region 19236
Cpgi12009 2 105130713 to 105131113 400 CpG island CpG island 12009
Tssr19237 2 105130964 to 105130981 17 + TSS region transcription start site region 19237
Cpgi12010 2 105132878 to 105133601 723 CpG island CpG island 12010
Cpgi12011 2 105134354 to 105134586 232 CpG island CpG island 12011
Tssr19238 2 105160238 to 105160244 6 + TSS region transcription start site region 19238
4930415N12Rik 2 105161823 to 105162598 775 unclassified gene RIKEN cDNA 4930415N12 gene
Tssr19239 2 105162525 to 105162534 9 + TSS region transcription start site region 19239
Tssr19240 2 105162981 to 105162998 17 + TSS region transcription start site region 19240
Tssr19241 2 105163120 to 105163123 3 + TSS region transcription start site region 19241
Sluc31a 2 105184658 to 105184825 167 QTL susceptibility to lung cancer 31a
D2Mit99 2 105184658 to 105184825 167 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 99
Cpgi12012 2 105224218 to 105224694 476 CpG island CpG island 12012
Tssr19242 2 105224287 to 105224308 21 + TSS region transcription start site region 19242
Tssr19243 2 105224314 to 105224357 43 + TSS region transcription start site region 19243
Them7 2 105224320 to 105379796 155476 + protein coding gene thioesterase superfamily member 7
D2Mit387 2 105262287 to 105262412 125 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 387
Femwf4 2 105313078 to 105313225 147 QTL femur work to failure 4
D2Mit44 2 105313078 to 105313225 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 44
Hbnr5 2 105313225 to 31324555 -73988670 QTL Heligmosomoides bakeri nematode resistance 5
D2Mit442 2 105357510 to 105357636 126 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 442
Tssr19244 2 105372973 to 105373010 37 + TSS region transcription start site region 19244
Rcn1 2 105386291 to 105399319 13028 - protein coding gene reticulocalbin 1
Cpgi12013 2 105398640 to 105399715 1075 CpG island CpG island 12013
Tssr25554 2 105399208 to 105399243 35 - TSS region transcription start site region 25554
Tssr25555 2 105399249 to 105399275 26 - TSS region transcription start site region 25555
Tssr25556 2 105399286 to 105399300 14 - TSS region transcription start site region 25556
Tssr25557 2 105399308 to 105399315 7 - TSS region transcription start site region 25557
Tssr25558 2 105399355 to 105399358 3 - TSS region transcription start site region 25558
Tssr25559 2 105399372 to 105399379 7 - TSS region transcription start site region 25559
Tssr25560 2 105399390 to 105399421 31 - TSS region transcription start site region 25560
Tssr25561 2 105399594 to 105399642 48 - TSS region transcription start site region 25561
Tssr19245 2 105425960 to 105425963 3 + TSS region transcription start site region 19245
Tssr19246 2 105425978 to 105425983 5 + TSS region transcription start site region 19246
Tssr19247 2 105425993 to 105425999 6 + TSS region transcription start site region 19247
Gm39900 2 105429368 to 105441465 12097 + lncRNA gene predicted gene, 39900
4930527A07Rik 2 105476501 to 105477357 856 + lincRNA gene RIKEN cDNA 4930527A07 gene
D2Mit185 2 105495630 to 105495777 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 185
D2Dcr54 2 105495637 to 105495773 136 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 54
Pax6os1 2 105536080 to 105670330 134250 - antisense lncRNA gene paired box 6 opposite strand 1
Gm13890 2 105537093 to 105537482 389 - pseudogene predicted gene 13890
Rpl10-ps1 2 105554201 to 105554845 644 - pseudogene ribosomal protein L10, pseudogene 1
Gm35946 2 105611282 to 105620482 9200 + lncRNA gene predicted gene, 35946
Paupar 2 105657862 to 105661343 3481 - lincRNA gene Pax6 upstream antisense RNA
Cpgi12014 2 105659961 to 105660323 362 CpG island CpG island 12014
Tssr19248 2 105660773 to 105660785 12 + TSS region transcription start site region 19248
Tssr19249 2 105660800 to 105660812 12 + TSS region transcription start site region 19249
Cpgi12015 2 105667169 to 105667340 171 CpG island CpG island 12015
Cpgi12016 2 105667664 to 105667973 309 CpG island CpG island 12016
Cpgi12017 2 105668646 to 105669143 497 CpG island CpG island 12017
Tssr19250 2 105668888 to 105668914 26 + TSS region transcription start site region 19250
Pax6 2 105668900 to 105697364 28464 + protein coding gene paired box 6
Tssr19251 2 105668943 to 105668950 7 + TSS region transcription start site region 19251
Cpgi12018 2 105669373 to 105670321 948 CpG island CpG island 12018
Tssr25562 2 105670291 to 105670298 7 - TSS region transcription start site region 25562
Tssr25563 2 105670301 to 105670322 21 - TSS region transcription start site region 25563
Cpgi12019 2 105672394 to 105672591 197 CpG island CpG island 12019
Tssr25564 2 105673978 to 105673981 3 - TSS region transcription start site region 25564
Tssr19252 2 105674406 to 105674422 16 + TSS region transcription start site region 19252
Tssr19253 2 105674426 to 105674437 11 + TSS region transcription start site region 19253
Tssr19254 2 105674543 to 105674558 15 + TSS region transcription start site region 19254
Cpgi12020 2 105674597 to 105676885 2288 CpG island CpG island 12020
Tssr25565 2 105675281 to 105675300 19 - TSS region transcription start site region 25565
Tssr19255 2 105675429 to 105675449 20 + TSS region transcription start site region 19255
Tssr19256 2 105675478 to 105675504 26 + TSS region transcription start site region 19256
Tssr19257 2 105675615 to 105675623 8 + TSS region transcription start site region 19257
Tssr19258 2 105675636 to 105675651 15 + TSS region transcription start site region 19258
Tssr19259 2 105675669 to 105675680 11 + TSS region transcription start site region 19259
Tssr19260 2 105675686 to 105675695 9 + TSS region transcription start site region 19260
Tssr19261 2 105675706 to 105675716 10 + TSS region transcription start site region 19261
Cpgi12021 2 105681157 to 105681688 531 CpG island CpG island 12021
Cpgi12022 2 105682091 to 105682416 325 CpG island CpG island 12022
Tssr19262 2 105682194 to 105682205 11 + TSS region transcription start site region 19262
Tssr19263 2 105682488 to 105682491 3 + TSS region transcription start site region 19263
Tssr19264 2 105682505 to 105682530 25 + TSS region transcription start site region 19264
Tssr19265 2 105682683 to 105682687 4 + TSS region transcription start site region 19265
Tssr19266 2 105682728 to 105682745 17 + TSS region transcription start site region 19266
Tssr19267 2 105682968 to 105682977 9 + TSS region transcription start site region 19267
Tssr19268 2 105683014 to 105683018 4 + TSS region transcription start site region 19268
Tssr588 2 105683566 to 105683594 28 + TSS region transcription start site region 588
Tssr19269 2 105689578 to 105689587 9 + TSS region transcription start site region 19269
Tssr19270 2 105691588 to 105691596 8 + TSS region transcription start site region 19270
Elp4 2 105701027 to 105904564 203537 - protein coding gene elongator acetyltransferase complex subunit 4
Gm13954 2 105708999 to 105710098 1099 + antisense lncRNA gene predicted gene 13954
A130004G07Rik 2 105736548 to 105741861 5313 unclassified non-coding RNA gene RIKEN cDNA A130004G07 gene
Tssr25566 2 105787547 to 105787550 3 - TSS region transcription start site region 25566
Cpgi12023 2 105904308 to 105904882 574 CpG island CpG island 12023
Tssr25567 2 105904484 to 105904527 43 - TSS region transcription start site region 25567
Tssr19271 2 105904629 to 105904685 56 + TSS region transcription start site region 19271
Immp1l 2 105904638 to 105965558 60920 + protein coding gene IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
Gm4415 2 105946096 to 105950989 4893 protein coding gene predicted gene 4415
Tssr25568 2 105959565 to 105959568 3 - TSS region transcription start site region 25568
Dnajc24 2 105966709 to 106003549 36840 - protein coding gene DnaJ heat shock protein family (Hsp40) member C24
Gm22002 2 105992757 to 105992881 124 + miRNA gene predicted gene, 22002
n-R5s201 2 105997032 to 105997147 115 + rRNA gene nuclear encoded rRNA 5S 201
Cpgi12024 2 106002948 to 106003514 566 CpG island CpG island 12024
Tssr25569 2 106003181 to 106003277 96 - TSS region transcription start site region 25569
Tssr19272 2 106003327 to 106003340 13 + TSS region transcription start site region 19272
Tssr19273 2 106003353 to 106003386 33 + TSS region transcription start site region 19273
Gm13992 2 106015200 to 106015355 155 + pseudogene predicted gene 13992
D2Dcr55 2 106019122 to 106019223 101 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 55
Gm9342 2 106038218 to 106053528 15310 + pseudogene predicted gene 9342
Gm29053 2 106038463 to 106040496 2033 - lincRNA gene predicted gene 29053
Dcdc5 2 106080864 to 106408603 327739 + protein coding gene doublecortin domain containing 5
Tssr19274 2 106080925 to 106080930 5 + TSS region transcription start site region 19274
Tssr19275 2 106080993 to 106081004 11 + TSS region transcription start site region 19275
Tssr19276 2 106081027 to 106081035 8 + TSS region transcription start site region 19276