Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:103794528-104144533

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Caprin1 2 103762945 to 103797640 34695 - protein coding gene cell cycle associated protein 1
Tssr19172 2 103795948 to 103795962 14 + TSS region transcription start site region 19172
Tssr19173 2 103795970 to 103796015 45 + TSS region transcription start site region 19173
Cpgi11985 2 103796279 to 103798124 1845 CpG island CpG island 11985
Tssr25500 2 103796936 to 103796978 42 - TSS region transcription start site region 25500
Tssr25501 2 103796989 to 103797088 99 - TSS region transcription start site region 25501
Gm39894 2 103797207 to 103830155 32948 + lncRNA gene predicted gene, 39894
Tssr586 2 103797569 to 103797574 5 - TSS region transcription start site region 586
Tssr25502 2 103797592 to 103797612 20 - TSS region transcription start site region 25502
Tssr25503 2 103797617 to 103797662 45 - TSS region transcription start site region 25503
4930547E08Rik 2 103804452 to 103810622 6170 - lncRNA gene RIKEN cDNA 4930547E08 gene
Gm13878 2 103810886 to 103811617 731 - pseudogene predicted gene 13878
Gm13880 2 103819003 to 103819476 473 - pseudogene predicted gene 13880
Cpgi11986 2 103819335 to 103819629 294 CpG island CpG island 11986
Tssr25504 2 103819341 to 103819353 12 - TSS region transcription start site region 25504
Tssr25505 2 103819665 to 103819670 5 - TSS region transcription start site region 25505
Gm13877 2 103837101 to 103837517 416 - pseudogene predicted gene 13877
Tssr19174 2 103838920 to 103838928 8 + TSS region transcription start site region 19174
Gm13875 2 103838954 to 103839235 281 + pseudogene predicted gene 13875
Gm22757 2 103839109 to 103839204 95 + miRNA gene predicted gene, 22757
Gm13879 2 103843415 to 103843656 241 - pseudogene predicted gene 13879
Gm22761 2 103843418 to 103843513 95 - miRNA gene predicted gene, 22761
Gm34948 2 103884992 to 103897710 12718 - lncRNA gene predicted gene, 34948
Gm13876 2 103888324 to 103888584 260 + pseudogene predicted gene 13876
Gm39895 2 103894020 to 103896101 2081 + lncRNA gene predicted gene, 39895
Lincred1 2 103900951 to 103913968 13017 + lncRNA gene long intergenic non-protein coding RNA of erythroid differentiation 1
Tssr19175 2 103904458 to 103904494 36 + TSS region transcription start site region 19175
Gm13881 2 103912024 to 103918960 6936 + lincRNA gene predicted gene 13881
Gm39896 2 103936203 to 103950802 14599 + lncRNA gene predicted gene, 39896
Tssr25506 2 103945051 to 103945069 18 - TSS region transcription start site region 25506
Tssr19176 2 103945155 to 103945193 38 + TSS region transcription start site region 19176
Tallbcr 2 103947881 to 103948661 780 protein coding gene T cell acute lymphoblastic leukemia breakpoint cluster region
D2Mit127 2 103948572 to 103948717 145 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 127
Tssr19177 2 103957926 to 103957937 11 + TSS region transcription start site region 19177
Tssr19178 2 103957947 to 103957973 26 + TSS region transcription start site region 19178
Tssr19179 2 103957976 to 103958021 45 + TSS region transcription start site region 19179
Lmo2 2 103957995 to 103981878 23883 + protein coding gene LIM domain only 2
Gm38515 2 103966943 to 103977935 10992 - lncRNA gene predicted gene, 38515
Cpgi11987 2 103969361 to 103971262 1901 CpG island CpG island 11987
Tssr19180 2 103969528 to 103969533 5 + TSS region transcription start site region 19180
Tssr19181 2 103969547 to 103969567 20 + TSS region transcription start site region 19181
Tssr19182 2 103969573 to 103969597 24 + TSS region transcription start site region 19182
Tssr19183 2 103969606 to 103969625 19 + TSS region transcription start site region 19183
Tssr19184 2 103969633 to 103969640 7 + TSS region transcription start site region 19184
Tssr19185 2 103969650 to 103969655 5 + TSS region transcription start site region 19185
Tssr19186 2 103969669 to 103969680 11 + TSS region transcription start site region 19186
Tssr19187 2 103969771 to 103969775 4 + TSS region transcription start site region 19187
Tssr19188 2 103970092 to 103970103 11 + TSS region transcription start site region 19188
Tssr19189 2 103970115 to 103970174 59 + TSS region transcription start site region 19189
Tssr19190 2 103970178 to 103970192 14 + TSS region transcription start site region 19190
Tssr19191 2 103970221 to 103970243 22 + TSS region transcription start site region 19191
Tssr19192 2 103970249 to 103970269 20 + TSS region transcription start site region 19192
Tssr19193 2 103970271 to 103970307 36 + TSS region transcription start site region 19193
Tssr19194 2 103970331 to 103970340 9 + TSS region transcription start site region 19194
Tssr19195 2 103970364 to 103970374 10 + TSS region transcription start site region 19195
Tssr19196 2 103971559 to 103971562 3 + TSS region transcription start site region 19196
Tssr19197 2 103977696 to 103977699 3 + TSS region transcription start site region 19197
Tssr19198 2 103980966 to 103980985 19 + TSS region transcription start site region 19198
Tssr19199 2 103981552 to 103981580 28 + TSS region transcription start site region 19199
4931422A03Rik 2 103992493 to 104027842 35349 - protein coding gene RIKEN cDNA 4931422A03 gene
Cpgi11988 2 104003360 to 104003527 167 CpG island CpG island 11988
Tssr25507 2 104006740 to 104006754 14 - TSS region transcription start site region 25507
Cpgi11989 2 104027593 to 104028531 938 CpG island CpG island 11989
Tssr19200 2 104027757 to 104027780 23 + TSS region transcription start site region 19200
Fbxo3 2 104027799 to 104063237 35438 + protein coding gene F-box protein 3
Tssr19201 2 104027823 to 104027868 45 + TSS region transcription start site region 19201
Tssr25508 2 104028287 to 104028337 50 - TSS region transcription start site region 25508
Gm24644 2 104040669 to 104040807 138 + snoRNA gene predicted gene, 24644
Tssr19202 2 104042032 to 104042039 7 + TSS region transcription start site region 19202
Gm10912 2 104065826 to 104067486 1660 + protein coding gene predicted gene 10912
Gm10799 2 104068047 to 104068550 503 - protein coding gene predicted gene 10799
Cd59b 2 104069779 to 104085790 16011 + protein coding gene CD59b antigen
Tssr19203 2 104069819 to 104069838 19 + TSS region transcription start site region 19203
Cpgi11990 2 104069895 to 104070047 152 CpG island CpG island 11990
Tssr19204 2 104095796 to 104095805 9 + TSS region transcription start site region 19204
Cd59a 2 104095801 to 104115354 19553 + protein coding gene CD59a antigen
Tssr19205 2 104095812 to 104095879 67 + TSS region transcription start site region 19205
Tssr19206 2 104096928 to 104096956 28 + TSS region transcription start site region 19206
Tssr19207 2 104112220 to 104112239 19 + TSS region transcription start site region 19207
Tssr19208 2 104113354 to 104113367 13 + TSS region transcription start site region 19208
Cpgi11991 2 104122573 to 104123498 925 CpG island CpG island 11991
Tssr19209 2 104122738 to 104122774 36 + TSS region transcription start site region 19209
A930018P22Rik 2 104122769 to 104124746 1977 + protein coding gene RIKEN cDNA A930018P22 gene
Tssr19210 2 104122795 to 104122813 18 + TSS region transcription start site region 19210
Tssr19211 2 104122817 to 104122827 10 + TSS region transcription start site region 19211
Tssr19212 2 104122849 to 104122854 5 + TSS region transcription start site region 19212
D2Mit43 2 104129973 to 104130181 208 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 43
D2Dcr51 2 104129990 to 104130092 102 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 51
D430041D05Rik 2 104143073 to 104411013 267940 - protein coding gene RIKEN cDNA D430041D05 gene