Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:103549366-104009401

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11982 2 103565167 to 103565533 366 CpG island CpG island 11982
Cpgi11983 2 103566105 to 103567625 1520 CpG island CpG island 11983
Tssr584 2 103566285 to 103566286 1 + TSS region transcription start site region 584
Tssr19162 2 103566304 to 103566323 19 + TSS region transcription start site region 19162
Abtb2 2 103566310 to 103718423 152113 + protein coding gene ankyrin repeat and BTB (POZ) domain containing 2
Tssr19163 2 103566342 to 103566351 9 + TSS region transcription start site region 19163
Tssr19164 2 103572121 to 103572125 4 + TSS region transcription start site region 19164
Tssr19165 2 103575369 to 103575373 4 + TSS region transcription start site region 19165
Tssr19166 2 103583593 to 103583602 9 + TSS region transcription start site region 19166
8030431J09Rik 2 103583716 to 103609861 26145 + lncRNA gene RIKEN cDNA 8030431J09 gene
Tssr25488 2 103605805 to 103605810 5 - TSS region transcription start site region 25488
Tssr25489 2 103605820 to 103605840 20 - TSS region transcription start site region 25489
Tssr585 2 103605865 to 103605867 2 - TSS region transcription start site region 585
Tssr19167 2 103606415 to 103606425 10 + TSS region transcription start site region 19167
Tssr19168 2 103606428 to 103606441 13 + TSS region transcription start site region 19168
Tssr19169 2 103612362 to 103612366 4 + TSS region transcription start site region 19169
Nat10 2 103721256 to 103761270 40014 - protein coding gene N-acetyltransferase 10
Cpgi11984 2 103760724 to 103761538 814 CpG island CpG island 11984
Tssr25490 2 103760922 to 103760941 19 - TSS region transcription start site region 25490
Tssr25491 2 103761078 to 103761090 12 - TSS region transcription start site region 25491
Tssr25492 2 103761163 to 103761172 9 - TSS region transcription start site region 25492
Tssr25493 2 103761178 to 103761286 108 - TSS region transcription start site region 25493
Tssr19170 2 103761413 to 103761426 13 + TSS region transcription start site region 19170
Tssr19171 2 103761477 to 103761485 8 + TSS region transcription start site region 19171
Caprin1 2 103762945 to 103797640 34695 - protein coding gene cell cycle associated protein 1
Tssr25494 2 103766495 to 103766509 14 - TSS region transcription start site region 25494
Tssr25495 2 103768878 to 103768906 28 - TSS region transcription start site region 25495
Tssr25496 2 103773045 to 103773061 16 - TSS region transcription start site region 25496
Tssr25497 2 103775954 to 103775972 18 - TSS region transcription start site region 25497
Tssr25498 2 103779366 to 103779401 35 - TSS region transcription start site region 25498
Tssr25499 2 103783159 to 103783172 13 - TSS region transcription start site region 25499
Tssr19172 2 103795948 to 103795962 14 + TSS region transcription start site region 19172
Tssr19173 2 103795970 to 103796015 45 + TSS region transcription start site region 19173
Cpgi11985 2 103796279 to 103798124 1845 CpG island CpG island 11985
Tssr25500 2 103796936 to 103796978 42 - TSS region transcription start site region 25500
Tssr25501 2 103796989 to 103797088 99 - TSS region transcription start site region 25501
Gm39894 2 103797207 to 103830155 32948 + lncRNA gene predicted gene, 39894
Tssr586 2 103797569 to 103797574 5 - TSS region transcription start site region 586
Tssr25502 2 103797592 to 103797612 20 - TSS region transcription start site region 25502
Tssr25503 2 103797617 to 103797662 45 - TSS region transcription start site region 25503
4930547E08Rik 2 103804452 to 103810622 6170 - lncRNA gene RIKEN cDNA 4930547E08 gene
Gm13878 2 103810886 to 103811617 731 - pseudogene predicted gene 13878
Gm13880 2 103819003 to 103819476 473 - pseudogene predicted gene 13880
Cpgi11986 2 103819335 to 103819629 294 CpG island CpG island 11986
Tssr25504 2 103819341 to 103819353 12 - TSS region transcription start site region 25504
Tssr25505 2 103819665 to 103819670 5 - TSS region transcription start site region 25505
Gm13877 2 103837101 to 103837517 416 - pseudogene predicted gene 13877
Tssr19174 2 103838920 to 103838928 8 + TSS region transcription start site region 19174
Gm13875 2 103838954 to 103839235 281 + pseudogene predicted gene 13875
Gm22757 2 103839109 to 103839204 95 + miRNA gene predicted gene, 22757
Gm13879 2 103843415 to 103843656 241 - pseudogene predicted gene 13879
Gm22761 2 103843418 to 103843513 95 - miRNA gene predicted gene, 22761
Gm34948 2 103884992 to 103897710 12718 - lncRNA gene predicted gene, 34948
Gm13876 2 103888324 to 103888584 260 + pseudogene predicted gene 13876
Gm39895 2 103894020 to 103896101 2081 + lncRNA gene predicted gene, 39895
Lincred1 2 103900951 to 103913968 13017 + lncRNA gene long intergenic non-protein coding RNA of erythroid differentiation 1
Tssr19175 2 103904458 to 103904494 36 + TSS region transcription start site region 19175
Gm13881 2 103912024 to 103918960 6936 + lincRNA gene predicted gene 13881
Gm39896 2 103936203 to 103950802 14599 + lncRNA gene predicted gene, 39896
Tssr25506 2 103945051 to 103945069 18 - TSS region transcription start site region 25506
Tssr19176 2 103945155 to 103945193 38 + TSS region transcription start site region 19176
Tallbcr 2 103947881 to 103948661 780 protein coding gene T cell acute lymphoblastic leukemia breakpoint cluster region
D2Mit127 2 103948572 to 103948717 145 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 127
Tssr19177 2 103957926 to 103957937 11 + TSS region transcription start site region 19177
Tssr19178 2 103957947 to 103957973 26 + TSS region transcription start site region 19178
Tssr19179 2 103957976 to 103958021 45 + TSS region transcription start site region 19179
Lmo2 2 103957995 to 103981878 23883 + protein coding gene LIM domain only 2
Gm38515 2 103966943 to 103977935 10992 - lncRNA gene predicted gene, 38515
Cpgi11987 2 103969361 to 103971262 1901 CpG island CpG island 11987
Tssr19180 2 103969528 to 103969533 5 + TSS region transcription start site region 19180
Tssr19181 2 103969547 to 103969567 20 + TSS region transcription start site region 19181
Tssr19182 2 103969573 to 103969597 24 + TSS region transcription start site region 19182
Tssr19183 2 103969606 to 103969625 19 + TSS region transcription start site region 19183
Tssr19184 2 103969633 to 103969640 7 + TSS region transcription start site region 19184
Tssr19185 2 103969650 to 103969655 5 + TSS region transcription start site region 19185
Tssr19186 2 103969669 to 103969680 11 + TSS region transcription start site region 19186
Tssr19187 2 103969771 to 103969775 4 + TSS region transcription start site region 19187
Tssr19188 2 103970092 to 103970103 11 + TSS region transcription start site region 19188
Tssr19189 2 103970115 to 103970174 59 + TSS region transcription start site region 19189
Tssr19190 2 103970178 to 103970192 14 + TSS region transcription start site region 19190
Tssr19191 2 103970221 to 103970243 22 + TSS region transcription start site region 19191
Tssr19192 2 103970249 to 103970269 20 + TSS region transcription start site region 19192
Tssr19193 2 103970271 to 103970307 36 + TSS region transcription start site region 19193
Tssr19194 2 103970331 to 103970340 9 + TSS region transcription start site region 19194
Tssr19195 2 103970364 to 103970374 10 + TSS region transcription start site region 19195
Tssr19196 2 103971559 to 103971562 3 + TSS region transcription start site region 19196
Tssr19197 2 103977696 to 103977699 3 + TSS region transcription start site region 19197
Tssr19198 2 103980966 to 103980985 19 + TSS region transcription start site region 19198
Tssr19199 2 103981552 to 103981580 28 + TSS region transcription start site region 19199
4931422A03Rik 2 103992493 to 104027842 35349 - protein coding gene RIKEN cDNA 4931422A03 gene
Cpgi11988 2 104003360 to 104003527 167 CpG island CpG island 11988
Tssr25507 2 104006740 to 104006754 14 - TSS region transcription start site region 25507