Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:102884449-104024466

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cd44 2 102811141 to 102901665 90524 - protein coding gene CD44 antigen
Tssr25445 2 102896052 to 102896076 24 - TSS region transcription start site region 25445
Gm23731 2 102897960 to 102898066 106 + snRNA gene predicted gene, 23731
Tssr25446 2 102897963 to 102897992 29 - TSS region transcription start site region 25446
Tssr19138 2 102899417 to 102899435 18 + TSS region transcription start site region 19138
Tssr25447 2 102900226 to 102900229 3 - TSS region transcription start site region 25447
Cpgi11979 2 102901229 to 102901596 367 CpG island CpG island 11979
Tssr25448 2 102901449 to 102901465 16 - TSS region transcription start site region 25448
In(2Cd44;Hoxd11)2Ddu 2 102901665 to 74679558 -28222107 chromosomal inversion inversion, Chr 2, Denis Duboule 2
Del(2Cd44-Hoxd11)43Ddu 2 102901665 to 74679558 -28222107 chromosomal deletion deletion, Chr 2, Denis Duboule 43
Tssr25449 2 102901996 to 102902031 35 - TSS region transcription start site region 25449
4933435N07Rik 2 102922931 to 102923739 808 unclassified gene RIKEN cDNA 4933435N07 gene
Tssr25450 2 102923727 to 102923740 13 - TSS region transcription start site region 25450
Tssr19139 2 102941054 to 102941077 23 + TSS region transcription start site region 19139
Gm34483 2 102941058 to 102960573 19515 + lncRNA gene predicted gene, 34483
Tssr19140 2 102944249 to 102944260 11 + TSS region transcription start site region 19140
Tssr579 2 102948024 to 102948060 36 + TSS region transcription start site region 579
Tssr19141 2 102948772 to 102948778 6 + TSS region transcription start site region 19141
Tssr25451 2 102967530 to 102967537 7 - TSS region transcription start site region 25451
Tssr580 2 102968536 to 102968541 5 - TSS region transcription start site region 580
Tssr25452 2 102968544 to 102968549 5 - TSS region transcription start site region 25452
Tssr25453 2 102968582 to 102968590 8 - TSS region transcription start site region 25453
Tssr19142 2 102968707 to 102968716 9 + TSS region transcription start site region 19142
Tssr19143 2 102998577 to 102998587 10 + TSS region transcription start site region 19143
Tssr19144 2 102998593 to 102998604 11 + TSS region transcription start site region 19144
Tssr581 2 103008382 to 103008392 10 + TSS region transcription start site region 581
Tssr19145 2 103009583 to 103009628 45 + TSS region transcription start site region 19145
Pdhx 2 103021075 to 103073513 52438 - protein coding gene pyruvate dehydrogenase complex, component X
Cpgi11980 2 103073059 to 103074005 946 CpG island CpG island 11980
Tssr25454 2 103073449 to 103073492 43 - TSS region transcription start site region 25454
Tssr19146 2 103073669 to 103073755 86 + TSS region transcription start site region 19146
Apip 2 103073675 to 103092644 18969 + protein coding gene APAF1 interacting protein
Tssr19147 2 103073764 to 103073788 24 + TSS region transcription start site region 19147
D2Mit388 2 103086226 to 103086400 174 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 388
Gm10038 2 103099155 to 103099601 446 + pseudogene predicted gene 10038
D2Mit12 2 103101322 to 103101521 199 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 12
Tssr25455 2 103172344 to 103172353 9 - TSS region transcription start site region 25455
Gm13874 2 103177787 to 103186681 8894 + lincRNA gene predicted gene 13874
Gm13869 2 103206209 to 103210357 4148 - lincRNA gene predicted gene 13869
Gm13873 2 103232538 to 103232964 426 - pseudogene predicted gene 13873
D2Mit250 2 103260236 to 103260382 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 250
Ehf 2 103263431 to 103303275 39844 - protein coding gene ets homologous factor
Tssr25456 2 103263609 to 103263613 4 - TSS region transcription start site region 25456
Lmr28a 2 103265371 to 129371085 26105714 QTL leishmaniasis resistance 28a
Ltpr2d 2 103265371 to 103265478 107 QTL Leishmania tropica response 2d
D2Mit389 2 103265371 to 103265478 107 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 389
Ltpr2c 2 103265371 to 103265478 107 QTL Leishmania tropica response 2c
Ltpr2 2 103265371 to 167370436 64105065 QTL Leishmania tropica response 2
Lmr28g 2 103265371 to 103265478 107 QTL leishmaniasis resistance 28g
Lmr14 2 103265371 to 103265478 107 QTL leishmaniasis resistance 14
Mohg1 2 103265478 to 76848414 -26417064 QTL modifier of hg 1
Tssr25457 2 103281265 to 103281309 44 - TSS region transcription start site region 25457
Tssr25458 2 103283602 to 103283620 18 - TSS region transcription start site region 25458
Tssr25459 2 103283768 to 103283802 34 - TSS region transcription start site region 25459
Tssr25460 2 103303158 to 103303171 13 - TSS region transcription start site region 25460
Tssr25461 2 103303179 to 103303210 31 - TSS region transcription start site region 25461
A930006I01Rik 2 103338601 to 103372764 34163 - lincRNA gene RIKEN cDNA A930006I01 gene
D2Mit97 2 103342069 to 103342189 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 97
Gm37220 2 103361335 to 103364738 3403 - unclassified gene predicted gene, 37220
Tssr582 2 103372683 to 103372689 6 - TSS region transcription start site region 582
Tssr25462 2 103372693 to 103372702 9 - TSS region transcription start site region 25462
Tssr25463 2 103372711 to 103372720 9 - TSS region transcription start site region 25463
Tssr25464 2 103372725 to 103372737 12 - TSS region transcription start site region 25464
BC016548 2 103377643 to 103389044 11401 - lincRNA gene cDNA sequence BC016548
Tssr19148 2 103411682 to 103411696 14 + TSS region transcription start site region 19148
Elf5 2 103411693 to 103450989 39296 + protein coding gene E74-like factor 5
Tssr583 2 103411749 to 103411750 1 + TSS region transcription start site region 583
Tssr19149 2 103411760 to 103411770 10 + TSS region transcription start site region 19149
Tssr19150 2 103412074 to 103412099 25 + TSS region transcription start site region 19150
Tssr19151 2 103424056 to 103424076 20 + TSS region transcription start site region 19151
Tssr19152 2 103424088 to 103424111 23 + TSS region transcription start site region 19152
Tssr19153 2 103424120 to 103424135 15 + TSS region transcription start site region 19153
Tssr19154 2 103424795 to 103424806 11 + TSS region transcription start site region 19154
Tssr19155 2 103424820 to 103424829 9 + TSS region transcription start site region 19155
Tssr19156 2 103439390 to 103439393 3 + TSS region transcription start site region 19156
Cat 2 103453904 to 103485153 31249 - protein coding gene catalase
Tssr25465 2 103454228 to 103454242 14 - TSS region transcription start site region 25465
Tssr19157 2 103454259 to 103454280 21 + TSS region transcription start site region 19157
Tssr19158 2 103454296 to 103454317 21 + TSS region transcription start site region 19158
Tssr25466 2 103454323 to 103454330 7 - TSS region transcription start site region 25466
Tssr19159 2 103454341 to 103454366 25 + TSS region transcription start site region 19159
Tssr25467 2 103454349 to 103454390 41 - TSS region transcription start site region 25467
Tssr25468 2 103454400 to 103454423 23 - TSS region transcription start site region 25468
Tssr25469 2 103454449 to 103454466 17 - TSS region transcription start site region 25469
Tssr25470 2 103454486 to 103454491 5 - TSS region transcription start site region 25470
Tssr25471 2 103454515 to 103454534 19 - TSS region transcription start site region 25471
Tssr25472 2 103454551 to 103454580 29 - TSS region transcription start site region 25472
Tssr25473 2 103454606 to 103454615 9 - TSS region transcription start site region 25473
Tssr25474 2 103454618 to 103454625 7 - TSS region transcription start site region 25474
Tssr25475 2 103454631 to 103454688 57 - TSS region transcription start site region 25475
Tssr25476 2 103454698 to 103454707 9 - TSS region transcription start site region 25476
Tssr25477 2 103454725 to 103454734 9 - TSS region transcription start site region 25477
Tssr25478 2 103455113 to 103455131 18 - TSS region transcription start site region 25478
Tssr25479 2 103455134 to 103455164 30 - TSS region transcription start site region 25479
Tssr25480 2 103456874 to 103456926 52 - TSS region transcription start site region 25480
Tssr19160 2 103456886 to 103456898 12 + TSS region transcription start site region 19160
Tssr19161 2 103456901 to 103456924 23 + TSS region transcription start site region 19161
Tssr25481 2 103460340 to 103460378 38 - TSS region transcription start site region 25481
Tssr25482 2 103467197 to 103467234 37 - TSS region transcription start site region 25482
Tssr25483 2 103467742 to 103467789 47 - TSS region transcription start site region 25483
Tssr25484 2 103470381 to 103470418 37 - TSS region transcription start site region 25484
Cpgi11981 2 103484651 to 103485262 611 CpG island CpG island 11981
Tssr25485 2 103485068 to 103485137 69 - TSS region transcription start site region 25485
Tssr25486 2 103485138 to 103485158 20 - TSS region transcription start site region 25486
Tssr25487 2 103485767 to 103485779 12 - TSS region transcription start site region 25487
Gm13996 2 103547259 to 103547688 429 + pseudogene predicted gene 13996
Cpgi11982 2 103565167 to 103565533 366 CpG island CpG island 11982
Cpgi11983 2 103566105 to 103567625 1520 CpG island CpG island 11983
Tssr584 2 103566285 to 103566286 1 + TSS region transcription start site region 584
Tssr19162 2 103566304 to 103566323 19 + TSS region transcription start site region 19162
Abtb2 2 103566310 to 103718423 152113 + protein coding gene ankyrin repeat and BTB (POZ) domain containing 2
Tssr19163 2 103566342 to 103566351 9 + TSS region transcription start site region 19163
Tssr19164 2 103572121 to 103572125 4 + TSS region transcription start site region 19164
Tssr19165 2 103575369 to 103575373 4 + TSS region transcription start site region 19165
Tssr19166 2 103583593 to 103583602 9 + TSS region transcription start site region 19166
8030431J09Rik 2 103583716 to 103609861 26145 + lncRNA gene RIKEN cDNA 8030431J09 gene
Tssr25488 2 103605805 to 103605810 5 - TSS region transcription start site region 25488
Tssr25489 2 103605820 to 103605840 20 - TSS region transcription start site region 25489
Tssr585 2 103605865 to 103605867 2 - TSS region transcription start site region 585
Tssr19167 2 103606415 to 103606425 10 + TSS region transcription start site region 19167
Tssr19168 2 103606428 to 103606441 13 + TSS region transcription start site region 19168
Tssr19169 2 103612362 to 103612366 4 + TSS region transcription start site region 19169
Nat10 2 103721256 to 103761270 40014 - protein coding gene N-acetyltransferase 10
Cpgi11984 2 103760724 to 103761538 814 CpG island CpG island 11984
Tssr25490 2 103760922 to 103760941 19 - TSS region transcription start site region 25490
Tssr25491 2 103761078 to 103761090 12 - TSS region transcription start site region 25491
Tssr25492 2 103761163 to 103761172 9 - TSS region transcription start site region 25492
Tssr25493 2 103761178 to 103761286 108 - TSS region transcription start site region 25493
Tssr19170 2 103761413 to 103761426 13 + TSS region transcription start site region 19170
Tssr19171 2 103761477 to 103761485 8 + TSS region transcription start site region 19171
Caprin1 2 103762945 to 103797640 34695 - protein coding gene cell cycle associated protein 1
Tssr25494 2 103766495 to 103766509 14 - TSS region transcription start site region 25494
Tssr25495 2 103768878 to 103768906 28 - TSS region transcription start site region 25495
Tssr25496 2 103773045 to 103773061 16 - TSS region transcription start site region 25496
Tssr25497 2 103775954 to 103775972 18 - TSS region transcription start site region 25497
Tssr25498 2 103779366 to 103779401 35 - TSS region transcription start site region 25498
Tssr25499 2 103783159 to 103783172 13 - TSS region transcription start site region 25499
Tssr19172 2 103795948 to 103795962 14 + TSS region transcription start site region 19172
Tssr19173 2 103795970 to 103796015 45 + TSS region transcription start site region 19173
Cpgi11985 2 103796279 to 103798124 1845 CpG island CpG island 11985
Tssr25500 2 103796936 to 103796978 42 - TSS region transcription start site region 25500
Tssr25501 2 103796989 to 103797088 99 - TSS region transcription start site region 25501
Gm39894 2 103797207 to 103830155 32948 + lncRNA gene predicted gene, 39894
Tssr586 2 103797569 to 103797574 5 - TSS region transcription start site region 586
Tssr25502 2 103797592 to 103797612 20 - TSS region transcription start site region 25502
Tssr25503 2 103797617 to 103797662 45 - TSS region transcription start site region 25503
4930547E08Rik 2 103804452 to 103810622 6170 - lncRNA gene RIKEN cDNA 4930547E08 gene
Gm13878 2 103810886 to 103811617 731 - pseudogene predicted gene 13878
Gm13880 2 103819003 to 103819476 473 - pseudogene predicted gene 13880
Cpgi11986 2 103819335 to 103819629 294 CpG island CpG island 11986
Tssr25504 2 103819341 to 103819353 12 - TSS region transcription start site region 25504
Tssr25505 2 103819665 to 103819670 5 - TSS region transcription start site region 25505
Gm13877 2 103837101 to 103837517 416 - pseudogene predicted gene 13877
Tssr19174 2 103838920 to 103838928 8 + TSS region transcription start site region 19174
Gm13875 2 103838954 to 103839235 281 + pseudogene predicted gene 13875
Gm22757 2 103839109 to 103839204 95 + miRNA gene predicted gene, 22757
Gm13879 2 103843415 to 103843656 241 - pseudogene predicted gene 13879
Gm22761 2 103843418 to 103843513 95 - miRNA gene predicted gene, 22761
Gm34948 2 103884992 to 103897710 12718 - lncRNA gene predicted gene, 34948
Gm13876 2 103888324 to 103888584 260 + pseudogene predicted gene 13876
Gm39895 2 103894020 to 103896101 2081 + lncRNA gene predicted gene, 39895
Lincred1 2 103900951 to 103913968 13017 + lncRNA gene long intergenic non-protein coding RNA of erythroid differentiation 1
Tssr19175 2 103904458 to 103904494 36 + TSS region transcription start site region 19175
Gm13881 2 103912024 to 103918960 6936 + lincRNA gene predicted gene 13881
Gm39896 2 103936203 to 103950802 14599 + lncRNA gene predicted gene, 39896
Tssr25506 2 103945051 to 103945069 18 - TSS region transcription start site region 25506
Tssr19176 2 103945155 to 103945193 38 + TSS region transcription start site region 19176
Tallbcr 2 103947881 to 103948661 780 protein coding gene T cell acute lymphoblastic leukemia breakpoint cluster region
D2Mit127 2 103948572 to 103948717 145 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 127
Tssr19177 2 103957926 to 103957937 11 + TSS region transcription start site region 19177
Tssr19178 2 103957947 to 103957973 26 + TSS region transcription start site region 19178
Tssr19179 2 103957976 to 103958021 45 + TSS region transcription start site region 19179
Lmo2 2 103957995 to 103981878 23883 + protein coding gene LIM domain only 2
Gm38515 2 103966943 to 103977935 10992 - lncRNA gene predicted gene, 38515
Cpgi11987 2 103969361 to 103971262 1901 CpG island CpG island 11987
Tssr19180 2 103969528 to 103969533 5 + TSS region transcription start site region 19180
Tssr19181 2 103969547 to 103969567 20 + TSS region transcription start site region 19181
Tssr19182 2 103969573 to 103969597 24 + TSS region transcription start site region 19182
Tssr19183 2 103969606 to 103969625 19 + TSS region transcription start site region 19183
Tssr19184 2 103969633 to 103969640 7 + TSS region transcription start site region 19184
Tssr19185 2 103969650 to 103969655 5 + TSS region transcription start site region 19185
Tssr19186 2 103969669 to 103969680 11 + TSS region transcription start site region 19186
Tssr19187 2 103969771 to 103969775 4 + TSS region transcription start site region 19187
Tssr19188 2 103970092 to 103970103 11 + TSS region transcription start site region 19188
Tssr19189 2 103970115 to 103970174 59 + TSS region transcription start site region 19189
Tssr19190 2 103970178 to 103970192 14 + TSS region transcription start site region 19190
Tssr19191 2 103970221 to 103970243 22 + TSS region transcription start site region 19191
Tssr19192 2 103970249 to 103970269 20 + TSS region transcription start site region 19192
Tssr19193 2 103970271 to 103970307 36 + TSS region transcription start site region 19193
Tssr19194 2 103970331 to 103970340 9 + TSS region transcription start site region 19194
Tssr19195 2 103970364 to 103970374 10 + TSS region transcription start site region 19195
Tssr19196 2 103971559 to 103971562 3 + TSS region transcription start site region 19196
Tssr19197 2 103977696 to 103977699 3 + TSS region transcription start site region 19197
Tssr19198 2 103980966 to 103980985 19 + TSS region transcription start site region 19198
Tssr19199 2 103981552 to 103981580 28 + TSS region transcription start site region 19199
4931422A03Rik 2 103992493 to 104027842 35349 - protein coding gene RIKEN cDNA 4931422A03 gene
Cpgi11988 2 104003360 to 104003527 167 CpG island CpG island 11988
Tssr25507 2 104006740 to 104006754 14 - TSS region transcription start site region 25507