Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:102868669-103278755

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cd44 2 102811141 to 102901665 90524 - protein coding gene CD44 antigen
Tssr25444 2 102868702 to 102868712 10 - TSS region transcription start site region 25444
Tssr25445 2 102896052 to 102896076 24 - TSS region transcription start site region 25445
Gm23731 2 102897960 to 102898066 106 + snRNA gene predicted gene, 23731
Tssr25446 2 102897963 to 102897992 29 - TSS region transcription start site region 25446
Tssr19138 2 102899417 to 102899435 18 + TSS region transcription start site region 19138
Tssr25447 2 102900226 to 102900229 3 - TSS region transcription start site region 25447
Cpgi11979 2 102901229 to 102901596 367 CpG island CpG island 11979
Tssr25448 2 102901449 to 102901465 16 - TSS region transcription start site region 25448
Del(2Cd44-Hoxd11)43Ddu 2 102901665 to 74679558 -28222107 chromosomal deletion deletion, Chr 2, Denis Duboule 43
In(2Cd44;Hoxd11)2Ddu 2 102901665 to 74679558 -28222107 chromosomal inversion inversion, Chr 2, Denis Duboule 2
Tssr25449 2 102901996 to 102902031 35 - TSS region transcription start site region 25449
4933435N07Rik 2 102922931 to 102923739 808 unclassified gene RIKEN cDNA 4933435N07 gene
Tssr25450 2 102923727 to 102923740 13 - TSS region transcription start site region 25450
Tssr19139 2 102941054 to 102941077 23 + TSS region transcription start site region 19139
Gm34483 2 102941058 to 102960573 19515 + lncRNA gene predicted gene, 34483
Tssr19140 2 102944249 to 102944260 11 + TSS region transcription start site region 19140
Tssr579 2 102948024 to 102948060 36 + TSS region transcription start site region 579
Tssr19141 2 102948772 to 102948778 6 + TSS region transcription start site region 19141
Tssr25451 2 102967530 to 102967537 7 - TSS region transcription start site region 25451
Tssr580 2 102968536 to 102968541 5 - TSS region transcription start site region 580
Tssr25452 2 102968544 to 102968549 5 - TSS region transcription start site region 25452
Tssr25453 2 102968582 to 102968590 8 - TSS region transcription start site region 25453
Tssr19142 2 102968707 to 102968716 9 + TSS region transcription start site region 19142
Tssr19143 2 102998577 to 102998587 10 + TSS region transcription start site region 19143
Tssr19144 2 102998593 to 102998604 11 + TSS region transcription start site region 19144
Tssr581 2 103008382 to 103008392 10 + TSS region transcription start site region 581
Tssr19145 2 103009583 to 103009628 45 + TSS region transcription start site region 19145
Pdhx 2 103021075 to 103073513 52438 - protein coding gene pyruvate dehydrogenase complex, component X
Cpgi11980 2 103073059 to 103074005 946 CpG island CpG island 11980
Tssr25454 2 103073449 to 103073492 43 - TSS region transcription start site region 25454
Tssr19146 2 103073669 to 103073755 86 + TSS region transcription start site region 19146
Apip 2 103073675 to 103092644 18969 + protein coding gene APAF1 interacting protein
Tssr19147 2 103073764 to 103073788 24 + TSS region transcription start site region 19147
D2Mit388 2 103086226 to 103086400 174 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 388
Gm10038 2 103099155 to 103099601 446 + pseudogene predicted gene 10038
D2Mit12 2 103101322 to 103101521 199 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 12
Tssr25455 2 103172344 to 103172353 9 - TSS region transcription start site region 25455
Gm13874 2 103177787 to 103186681 8894 + lincRNA gene predicted gene 13874
Gm13869 2 103206209 to 103210357 4148 - lincRNA gene predicted gene 13869
Gm13873 2 103232538 to 103232964 426 - pseudogene predicted gene 13873
D2Mit250 2 103260236 to 103260382 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 250
Ehf 2 103263431 to 103303275 39844 - protein coding gene ets homologous factor
Tssr25456 2 103263609 to 103263613 4 - TSS region transcription start site region 25456
D2Mit389 2 103265371 to 103265478 107 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 389
Lmr28a 2 103265371 to 129371085 26105714 QTL leishmaniasis resistance 28a
Lmr28g 2 103265371 to 103265478 107 QTL leishmaniasis resistance 28g
Ltpr2 2 103265371 to 167370436 64105065 QTL Leishmania tropica response 2
Lmr14 2 103265371 to 103265478 107 QTL leishmaniasis resistance 14
Ltpr2d 2 103265371 to 103265478 107 QTL Leishmania tropica response 2d
Ltpr2c 2 103265371 to 103265478 107 QTL Leishmania tropica response 2c
Mohg1 2 103265478 to 76848414 -26417064 QTL modifier of hg 1