Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:102840236-103680382

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cd44 2 102811141 to 102901665 90524 - protein coding gene CD44 antigen
Tssr25437 2 102861604 to 102861626 22 - TSS region transcription start site region 25437
Tssr25438 2 102861640 to 102861691 51 - TSS region transcription start site region 25438
Tssr25439 2 102861692 to 102861712 20 - TSS region transcription start site region 25439
Tssr25440 2 102865333 to 102865355 22 - TSS region transcription start site region 25440
Tssr25441 2 102865357 to 102865408 51 - TSS region transcription start site region 25441
Tssr25442 2 102865535 to 102865538 3 - TSS region transcription start site region 25442
Tssr25443 2 102866682 to 102866684 2 - TSS region transcription start site region 25443
Tssr25444 2 102868702 to 102868712 10 - TSS region transcription start site region 25444
Tssr25445 2 102896052 to 102896076 24 - TSS region transcription start site region 25445
Gm23731 2 102897960 to 102898066 106 + snRNA gene predicted gene, 23731
Tssr25446 2 102897963 to 102897992 29 - TSS region transcription start site region 25446
Tssr19138 2 102899417 to 102899435 18 + TSS region transcription start site region 19138
Tssr25447 2 102900226 to 102900229 3 - TSS region transcription start site region 25447
Cpgi11979 2 102901229 to 102901596 367 CpG island CpG island 11979
Tssr25448 2 102901449 to 102901465 16 - TSS region transcription start site region 25448
In(2Cd44;Hoxd11)2Ddu 2 102901665 to 74679558 -28222107 chromosomal inversion inversion, Chr 2, Denis Duboule 2
Del(2Cd44-Hoxd11)43Ddu 2 102901665 to 74679558 -28222107 chromosomal deletion deletion, Chr 2, Denis Duboule 43
Tssr25449 2 102901996 to 102902031 35 - TSS region transcription start site region 25449
4933435N07Rik 2 102922931 to 102923739 808 unclassified gene RIKEN cDNA 4933435N07 gene
Tssr25450 2 102923727 to 102923740 13 - TSS region transcription start site region 25450
Tssr19139 2 102941054 to 102941077 23 + TSS region transcription start site region 19139
Gm34483 2 102941058 to 102960573 19515 + lncRNA gene predicted gene, 34483
Tssr19140 2 102944249 to 102944260 11 + TSS region transcription start site region 19140
Tssr579 2 102948024 to 102948060 36 + TSS region transcription start site region 579
Tssr19141 2 102948772 to 102948778 6 + TSS region transcription start site region 19141
Tssr25451 2 102967530 to 102967537 7 - TSS region transcription start site region 25451
Tssr580 2 102968536 to 102968541 5 - TSS region transcription start site region 580
Tssr25452 2 102968544 to 102968549 5 - TSS region transcription start site region 25452
Tssr25453 2 102968582 to 102968590 8 - TSS region transcription start site region 25453
Tssr19142 2 102968707 to 102968716 9 + TSS region transcription start site region 19142
Tssr19143 2 102998577 to 102998587 10 + TSS region transcription start site region 19143
Tssr19144 2 102998593 to 102998604 11 + TSS region transcription start site region 19144
Tssr581 2 103008382 to 103008392 10 + TSS region transcription start site region 581
Tssr19145 2 103009583 to 103009628 45 + TSS region transcription start site region 19145
Pdhx 2 103021075 to 103073513 52438 - protein coding gene pyruvate dehydrogenase complex, component X
Cpgi11980 2 103073059 to 103074005 946 CpG island CpG island 11980
Tssr25454 2 103073449 to 103073492 43 - TSS region transcription start site region 25454
Tssr19146 2 103073669 to 103073755 86 + TSS region transcription start site region 19146
Apip 2 103073675 to 103092644 18969 + protein coding gene APAF1 interacting protein
Tssr19147 2 103073764 to 103073788 24 + TSS region transcription start site region 19147
D2Mit388 2 103086226 to 103086400 174 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 388
Gm10038 2 103099155 to 103099601 446 + pseudogene predicted gene 10038
D2Mit12 2 103101322 to 103101521 199 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 12
Tssr25455 2 103172344 to 103172353 9 - TSS region transcription start site region 25455
Gm13874 2 103177787 to 103186681 8894 + lincRNA gene predicted gene 13874
Gm13869 2 103206209 to 103210357 4148 - lincRNA gene predicted gene 13869
Gm13873 2 103232538 to 103232964 426 - pseudogene predicted gene 13873
D2Mit250 2 103260236 to 103260382 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 250
Ehf 2 103263431 to 103303275 39844 - protein coding gene ets homologous factor
Tssr25456 2 103263609 to 103263613 4 - TSS region transcription start site region 25456
Ltpr2 2 103265371 to 167370436 64105065 QTL Leishmania tropica response 2
Ltpr2d 2 103265371 to 103265478 107 QTL Leishmania tropica response 2d
Ltpr2c 2 103265371 to 103265478 107 QTL Leishmania tropica response 2c
Lmr14 2 103265371 to 103265478 107 QTL leishmaniasis resistance 14
Lmr28g 2 103265371 to 103265478 107 QTL leishmaniasis resistance 28g
Lmr28a 2 103265371 to 129371085 26105714 QTL leishmaniasis resistance 28a
D2Mit389 2 103265371 to 103265478 107 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 389
Mohg1 2 103265478 to 76848414 -26417064 QTL modifier of hg 1
Tssr25457 2 103281265 to 103281309 44 - TSS region transcription start site region 25457
Tssr25458 2 103283602 to 103283620 18 - TSS region transcription start site region 25458
Tssr25459 2 103283768 to 103283802 34 - TSS region transcription start site region 25459
Tssr25460 2 103303158 to 103303171 13 - TSS region transcription start site region 25460
Tssr25461 2 103303179 to 103303210 31 - TSS region transcription start site region 25461
A930006I01Rik 2 103338601 to 103372764 34163 - lincRNA gene RIKEN cDNA A930006I01 gene
D2Mit97 2 103342069 to 103342189 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 97
Gm37220 2 103361335 to 103364738 3403 - unclassified gene predicted gene, 37220
Tssr582 2 103372683 to 103372689 6 - TSS region transcription start site region 582
Tssr25462 2 103372693 to 103372702 9 - TSS region transcription start site region 25462
Tssr25463 2 103372711 to 103372720 9 - TSS region transcription start site region 25463
Tssr25464 2 103372725 to 103372737 12 - TSS region transcription start site region 25464
BC016548 2 103377643 to 103389044 11401 - lincRNA gene cDNA sequence BC016548
Tssr19148 2 103411682 to 103411696 14 + TSS region transcription start site region 19148
Elf5 2 103411693 to 103450989 39296 + protein coding gene E74-like factor 5
Tssr583 2 103411749 to 103411750 1 + TSS region transcription start site region 583
Tssr19149 2 103411760 to 103411770 10 + TSS region transcription start site region 19149
Tssr19150 2 103412074 to 103412099 25 + TSS region transcription start site region 19150
Tssr19151 2 103424056 to 103424076 20 + TSS region transcription start site region 19151
Tssr19152 2 103424088 to 103424111 23 + TSS region transcription start site region 19152
Tssr19153 2 103424120 to 103424135 15 + TSS region transcription start site region 19153
Tssr19154 2 103424795 to 103424806 11 + TSS region transcription start site region 19154
Tssr19155 2 103424820 to 103424829 9 + TSS region transcription start site region 19155
Tssr19156 2 103439390 to 103439393 3 + TSS region transcription start site region 19156
Cat 2 103453904 to 103485153 31249 - protein coding gene catalase
Tssr25465 2 103454228 to 103454242 14 - TSS region transcription start site region 25465
Tssr19157 2 103454259 to 103454280 21 + TSS region transcription start site region 19157
Tssr19158 2 103454296 to 103454317 21 + TSS region transcription start site region 19158
Tssr25466 2 103454323 to 103454330 7 - TSS region transcription start site region 25466
Tssr19159 2 103454341 to 103454366 25 + TSS region transcription start site region 19159
Tssr25467 2 103454349 to 103454390 41 - TSS region transcription start site region 25467
Tssr25468 2 103454400 to 103454423 23 - TSS region transcription start site region 25468
Tssr25469 2 103454449 to 103454466 17 - TSS region transcription start site region 25469
Tssr25470 2 103454486 to 103454491 5 - TSS region transcription start site region 25470
Tssr25471 2 103454515 to 103454534 19 - TSS region transcription start site region 25471
Tssr25472 2 103454551 to 103454580 29 - TSS region transcription start site region 25472
Tssr25473 2 103454606 to 103454615 9 - TSS region transcription start site region 25473
Tssr25474 2 103454618 to 103454625 7 - TSS region transcription start site region 25474
Tssr25475 2 103454631 to 103454688 57 - TSS region transcription start site region 25475
Tssr25476 2 103454698 to 103454707 9 - TSS region transcription start site region 25476
Tssr25477 2 103454725 to 103454734 9 - TSS region transcription start site region 25477
Tssr25478 2 103455113 to 103455131 18 - TSS region transcription start site region 25478
Tssr25479 2 103455134 to 103455164 30 - TSS region transcription start site region 25479
Tssr25480 2 103456874 to 103456926 52 - TSS region transcription start site region 25480
Tssr19160 2 103456886 to 103456898 12 + TSS region transcription start site region 19160
Tssr19161 2 103456901 to 103456924 23 + TSS region transcription start site region 19161
Tssr25481 2 103460340 to 103460378 38 - TSS region transcription start site region 25481
Tssr25482 2 103467197 to 103467234 37 - TSS region transcription start site region 25482
Tssr25483 2 103467742 to 103467789 47 - TSS region transcription start site region 25483
Tssr25484 2 103470381 to 103470418 37 - TSS region transcription start site region 25484
Cpgi11981 2 103484651 to 103485262 611 CpG island CpG island 11981
Tssr25485 2 103485068 to 103485137 69 - TSS region transcription start site region 25485
Tssr25486 2 103485138 to 103485158 20 - TSS region transcription start site region 25486
Tssr25487 2 103485767 to 103485779 12 - TSS region transcription start site region 25487
Gm13996 2 103547259 to 103547688 429 + pseudogene predicted gene 13996
Cpgi11982 2 103565167 to 103565533 366 CpG island CpG island 11982
Cpgi11983 2 103566105 to 103567625 1520 CpG island CpG island 11983
Tssr584 2 103566285 to 103566286 1 + TSS region transcription start site region 584
Tssr19162 2 103566304 to 103566323 19 + TSS region transcription start site region 19162
Abtb2 2 103566310 to 103718423 152113 + protein coding gene ankyrin repeat and BTB (POZ) domain containing 2
Tssr19163 2 103566342 to 103566351 9 + TSS region transcription start site region 19163
Tssr19164 2 103572121 to 103572125 4 + TSS region transcription start site region 19164
Tssr19165 2 103575369 to 103575373 4 + TSS region transcription start site region 19165
Tssr19166 2 103583593 to 103583602 9 + TSS region transcription start site region 19166
8030431J09Rik 2 103583716 to 103609861 26145 + lncRNA gene RIKEN cDNA 8030431J09 gene
Tssr25488 2 103605805 to 103605810 5 - TSS region transcription start site region 25488
Tssr25489 2 103605820 to 103605840 20 - TSS region transcription start site region 25489
Tssr585 2 103605865 to 103605867 2 - TSS region transcription start site region 585
Tssr19167 2 103606415 to 103606425 10 + TSS region transcription start site region 19167
Tssr19168 2 103606428 to 103606441 13 + TSS region transcription start site region 19168
Tssr19169 2 103612362 to 103612366 4 + TSS region transcription start site region 19169