Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:101641797-103261815

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214 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rag1 2 101638282 to 101649501 11219 - protein coding gene recombination activating 1
Tssr25368 2 101643589 to 101643598 9 - TSS region transcription start site region 25368
Tssr25369 2 101643729 to 101643741 12 - TSS region transcription start site region 25369
Tssr25370 2 101643912 to 101643919 7 - TSS region transcription start site region 25370
Tssr25371 2 101644181 to 101644192 11 - TSS region transcription start site region 25371
Cpgi11970 2 101644293 to 101644499 206 CpG island CpG island 11970
Tssr19079 2 101644392 to 101644435 43 + TSS region transcription start site region 19079
Tssr25372 2 101644857 to 101644872 15 - TSS region transcription start site region 25372
Tssr25373 2 101649417 to 101649422 5 - TSS region transcription start site region 25373
Tssr25374 2 101649523 to 101649539 16 - TSS region transcription start site region 25374
Tssr19080 2 101649697 to 101649728 31 + TSS region transcription start site region 19080
Tssr19081 2 101649731 to 101649749 18 + TSS region transcription start site region 19081
Tssr19082 2 101649825 to 101649830 5 + TSS region transcription start site region 19082
Tssr25375 2 101650676 to 101650680 4 - TSS region transcription start site region 25375
Gm34041 2 101657856 to 101665715 7859 - lncRNA gene predicted gene, 34041
Cpgi11971 2 101678135 to 101679083 948 CpG island CpG island 11971
Tssr19083 2 101678403 to 101678469 66 + TSS region transcription start site region 19083
Traf6 2 101678429 to 101701669 23240 + protein coding gene TNF receptor-associated factor 6
D2Mit161 2 101694497 to 101694645 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 161
Prr5l 2 101714285 to 101883027 168742 - protein coding gene proline rich 5 like
Tssr25376 2 101773046 to 101773049 3 - TSS region transcription start site region 25376
Cpgi11972 2 101796222 to 101797835 1613 CpG island CpG island 11972
Tssr25377 2 101796451 to 101796471 20 - TSS region transcription start site region 25377
Tssr576 2 101797648 to 101797653 5 - TSS region transcription start site region 576
Tssr25378 2 101797658 to 101797694 36 - TSS region transcription start site region 25378
Tssr25379 2 101820457 to 101820460 3 - TSS region transcription start site region 25379
Gm13905 2 101872175 to 101883256 11081 + lincRNA gene predicted gene 13905
Tssr25380 2 101883010 to 101883023 13 - TSS region transcription start site region 25380
Tssr25381 2 101883024 to 101883042 18 - TSS region transcription start site region 25381
D2Mit249 2 101883736 to 101883882 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 249
Cpgi11973 2 101886057 to 101886483 426 CpG island CpG island 11973
Tssr19084 2 101886249 to 101886269 20 + TSS region transcription start site region 19084
Commd9 2 101886262 to 101901639 15377 + protein coding gene COMM domain containing 9
Ldlrad3 2 101950203 to 102186385 236182 - protein coding gene low density lipoprotein receptor class A domain containing 3
Tssr25382 2 101950598 to 101950618 20 - TSS region transcription start site region 25382
Tssr19085 2 101965157 to 101965159 2 + TSS region transcription start site region 19085
Tssr25383 2 101982009 to 101982013 4 - TSS region transcription start site region 25383
Gm39888 2 101986093 to 102012609 26516 + lncRNA gene predicted gene, 39888
Tssr19086 2 101991945 to 101991953 8 + TSS region transcription start site region 19086
Tssr19087 2 101991963 to 101991984 21 + TSS region transcription start site region 19087
Tssr19088 2 101992162 to 101992172 10 + TSS region transcription start site region 19088
Tssr19089 2 102039595 to 102039597 2 + TSS region transcription start site region 19089
Tssr19090 2 102039616 to 102039636 20 + TSS region transcription start site region 19090
Gm13919 2 102039629 to 102066725 27096 + antisense lncRNA gene predicted gene 13919
Tssr19091 2 102039646 to 102039659 13 + TSS region transcription start site region 19091
Tssr25384 2 102050495 to 102050499 4 - TSS region transcription start site region 25384
Tssr25385 2 102057495 to 102057499 4 - TSS region transcription start site region 25385
Gm13920 2 102057587 to 102061430 3843 + antisense lncRNA gene predicted gene 13920
Tssr25386 2 102076421 to 102076437 16 - TSS region transcription start site region 25386
Tssr25387 2 102137970 to 102137984 14 - TSS region transcription start site region 25387
D2Mit251 2 102172482 to 102172602 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 251
Gm13921 2 102174290 to 102174752 462 + pseudogene predicted gene 13921
1700082C01Rik 2 102185350 to 102186054 704 unclassified gene RIKEN cDNA 1700082C01 gene
Cpgi11974 2 102185505 to 102186621 1116 CpG island CpG island 11974
Tssr25388 2 102186322 to 102186394 72 - TSS region transcription start site region 25388
Gm13866 2 102209412 to 102210379 967 - pseudogene predicted gene 13866
Gm34268 2 102241935 to 102246963 5028 - lncRNA gene predicted gene, 34268
Tssr19092 2 102287382 to 102287390 8 + TSS region transcription start site region 19092
Trim44 2 102300119 to 102400900 100781 - protein coding gene tripartite motif-containing 44
Gm13868 2 102311914 to 102312207 293 - pseudogene predicted gene 13868
Tssr25389 2 102385578 to 102385581 3 - TSS region transcription start site region 25389
Cpgi11975 2 102400002 to 102401398 1396 CpG island CpG island 11975
Tssr19093 2 102400208 to 102400360 152 + TSS region transcription start site region 19093
Tssr25390 2 102400385 to 102400396 11 - TSS region transcription start site region 25390
Tssr25391 2 102400405 to 102400420 15 - TSS region transcription start site region 25391
Tssr25392 2 102400456 to 102400469 13 - TSS region transcription start site region 25392
Tssr25393 2 102400532 to 102400539 7 - TSS region transcription start site region 25393
Tssr25394 2 102400863 to 102400970 107 - TSS region transcription start site region 25394
Tssr25395 2 102400991 to 102401109 118 - TSS region transcription start site region 25395
Tssr25396 2 102401157 to 102401210 53 - TSS region transcription start site region 25396
Gm39890 2 102407391 to 102412267 4876 - lncRNA gene predicted gene, 39890
Fjx1 2 102449366 to 102451792 2426 - protein coding gene four jointed box 1
Cpgi11976 2 102450165 to 102452280 2115 CpG island CpG island 11976
Tssr25397 2 102451760 to 102451774 14 - TSS region transcription start site region 25397
Tssr25398 2 102451797 to 102451815 18 - TSS region transcription start site region 25398
Tssr25399 2 102451826 to 102451843 17 - TSS region transcription start site region 25399
Cpgi11977 2 102549766 to 102550263 497 CpG island CpG island 11977
Pamr1 2 102550012 to 102643041 93029 + protein coding gene peptidase domain containing associated with muscle regeneration 1
Tssr19094 2 102550045 to 102550080 35 + TSS region transcription start site region 19094
Tssr19095 2 102550099 to 102550113 14 + TSS region transcription start site region 19095
Tssr19096 2 102550117 to 102550128 11 + TSS region transcription start site region 19096
Tssr19097 2 102550138 to 102550168 30 + TSS region transcription start site region 19097
Tssr25400 2 102568922 to 102568927 5 - TSS region transcription start site region 25400
Tssr25401 2 102568938 to 102568949 11 - TSS region transcription start site region 25401
Tssr577 2 102568956 to 102568960 4 - TSS region transcription start site region 577
D2Ertd282e 2 102615323 to 102615540 217 DNA segment DNA segment, Chr 2, ERATO Doi 282, expressed
Tssr19098 2 102658228 to 102658239 11 + TSS region transcription start site region 19098
Tssr19099 2 102658280 to 102658311 31 + TSS region transcription start site region 19099
Tssr19100 2 102658576 to 102658580 4 + TSS region transcription start site region 19100
Cpgi11978 2 102658594 to 102659755 1161 CpG island CpG island 11978
Tssr19101 2 102658640 to 102658669 29 + TSS region transcription start site region 19101
Slc1a2 2 102658659 to 102790784 132125 + protein coding gene solute carrier family 1 (glial high affinity glutamate transporter), member 2
Tssr19102 2 102658677 to 102658695 18 + TSS region transcription start site region 19102
Tssr19103 2 102658726 to 102658742 16 + TSS region transcription start site region 19103
Tssr19104 2 102658752 to 102658764 12 + TSS region transcription start site region 19104
Tssr19105 2 102658818 to 102658834 16 + TSS region transcription start site region 19105
Tssr19106 2 102658843 to 102658852 9 + TSS region transcription start site region 19106
Tssr19107 2 102658854 to 102658872 18 + TSS region transcription start site region 19107
Tssr19108 2 102658897 to 102658908 11 + TSS region transcription start site region 19108
Tssr19109 2 102658933 to 102658950 17 + TSS region transcription start site region 19109
Tssr19110 2 102659213 to 102659232 19 + TSS region transcription start site region 19110
Tssr19111 2 102675514 to 102675525 11 + TSS region transcription start site region 19111
Tssr19112 2 102675547 to 102675557 10 + TSS region transcription start site region 19112
Tssr19113 2 102686096 to 102686130 34 + TSS region transcription start site region 19113
Tssr19114 2 102691328 to 102691329 1 + TSS region transcription start site region 19114
Tssr19115 2 102706414 to 102706430 16 + TSS region transcription start site region 19115
Tssr25402 2 102739837 to 102739858 21 - TSS region transcription start site region 25402
Gm13872 2 102744286 to 102747371 3085 - antisense lncRNA gene predicted gene 13872
Tssr25403 2 102746712 to 102746717 5 - TSS region transcription start site region 25403
Tssr25404 2 102746731 to 102746736 5 - TSS region transcription start site region 25404
Tssr25405 2 102746739 to 102746751 12 - TSS region transcription start site region 25405
Tssr25406 2 102746755 to 102746764 9 - TSS region transcription start site region 25406
Tssr19116 2 102777466 to 102777487 21 + TSS region transcription start site region 19116
Tssr19117 2 102778269 to 102778274 5 + TSS region transcription start site region 19117
Tssr19118 2 102781803 to 102781812 9 + TSS region transcription start site region 19118
Tssr578 2 102781986 to 102782006 20 + TSS region transcription start site region 578
Tssr19119 2 102782053 to 102782065 12 + TSS region transcription start site region 19119
Tssr19120 2 102783158 to 102783174 16 + TSS region transcription start site region 19120
Tssr19121 2 102783821 to 102783842 21 + TSS region transcription start site region 19121
Tssr19122 2 102784413 to 102784427 14 + TSS region transcription start site region 19122
Tssr19123 2 102784777 to 102784785 8 + TSS region transcription start site region 19123
Tssr19124 2 102785398 to 102785405 7 + TSS region transcription start site region 19124
Tssr19125 2 102785812 to 102785824 12 + TSS region transcription start site region 19125
Tssr19126 2 102785932 to 102785943 11 + TSS region transcription start site region 19126
Tssr19127 2 102785965 to 102785985 20 + TSS region transcription start site region 19127
Tssr19128 2 102785995 to 102786012 17 + TSS region transcription start site region 19128
Tssr19129 2 102786317 to 102786328 11 + TSS region transcription start site region 19129
Tssr19130 2 102787009 to 102787020 11 + TSS region transcription start site region 19130
Tssr19131 2 102787174 to 102787178 4 + TSS region transcription start site region 19131
Tssr19132 2 102787463 to 102787474 11 + TSS region transcription start site region 19132
Tssr19133 2 102787509 to 102787518 9 + TSS region transcription start site region 19133
Tssr19134 2 102787526 to 102787541 15 + TSS region transcription start site region 19134
Tssr19135 2 102787631 to 102787645 14 + TSS region transcription start site region 19135
Tssr19136 2 102787671 to 102787682 11 + TSS region transcription start site region 19136
Tssr19137 2 102787961 to 102787972 11 + TSS region transcription start site region 19137
Cd44 2 102811141 to 102901665 90524 - protein coding gene CD44 antigen
Tssr25407 2 102811633 to 102811645 12 - TSS region transcription start site region 25407
Tssr25408 2 102811831 to 102811844 13 - TSS region transcription start site region 25408
Tssr25409 2 102811867 to 102811882 15 - TSS region transcription start site region 25409
Tssr25410 2 102812173 to 102812189 16 - TSS region transcription start site region 25410
Tssr25411 2 102812378 to 102812400 22 - TSS region transcription start site region 25411
Tssr25412 2 102812492 to 102812504 12 - TSS region transcription start site region 25412
Tssr25413 2 102812510 to 102812529 19 - TSS region transcription start site region 25413
Tssr25414 2 102812615 to 102812629 14 - TSS region transcription start site region 25414
Tssr25415 2 102812664 to 102812711 47 - TSS region transcription start site region 25415
Tssr25416 2 102812742 to 102812777 35 - TSS region transcription start site region 25416
Tssr25417 2 102812833 to 102812845 12 - TSS region transcription start site region 25417
Tssr25418 2 102813449 to 102813469 20 - TSS region transcription start site region 25418
Tssr25419 2 102813511 to 102813542 31 - TSS region transcription start site region 25419
Tssr25420 2 102813571 to 102813585 14 - TSS region transcription start site region 25420
Tssr25421 2 102813649 to 102813673 24 - TSS region transcription start site region 25421
Tssr25422 2 102813713 to 102813724 11 - TSS region transcription start site region 25422
Tssr25423 2 102813730 to 102813741 11 - TSS region transcription start site region 25423
Tssr25424 2 102813856 to 102813867 11 - TSS region transcription start site region 25424
Tssr25425 2 102813871 to 102813882 11 - TSS region transcription start site region 25425
Tssr25426 2 102813921 to 102813928 7 - TSS region transcription start site region 25426
Tssr25427 2 102814023 to 102814034 11 - TSS region transcription start site region 25427
Tssr25428 2 102814130 to 102814141 11 - TSS region transcription start site region 25428
Tssr25429 2 102825539 to 102825588 49 - TSS region transcription start site region 25429
Tssr25430 2 102828576 to 102828580 4 - TSS region transcription start site region 25430
Tssr25431 2 102829170 to 102829176 6 - TSS region transcription start site region 25431
Tssr25432 2 102829386 to 102829407 21 - TSS region transcription start site region 25432
Tssr25433 2 102829461 to 102829471 10 - TSS region transcription start site region 25433
Tssr25434 2 102835779 to 102835808 29 - TSS region transcription start site region 25434
Tssr25435 2 102835836 to 102835871 35 - TSS region transcription start site region 25435
Tssr25436 2 102835891 to 102835911 20 - TSS region transcription start site region 25436
Tssr25437 2 102861604 to 102861626 22 - TSS region transcription start site region 25437
Tssr25438 2 102861640 to 102861691 51 - TSS region transcription start site region 25438
Tssr25439 2 102861692 to 102861712 20 - TSS region transcription start site region 25439
Tssr25440 2 102865333 to 102865355 22 - TSS region transcription start site region 25440
Tssr25441 2 102865357 to 102865408 51 - TSS region transcription start site region 25441
Tssr25442 2 102865535 to 102865538 3 - TSS region transcription start site region 25442
Tssr25443 2 102866682 to 102866684 2 - TSS region transcription start site region 25443
Tssr25444 2 102868702 to 102868712 10 - TSS region transcription start site region 25444
Tssr25445 2 102896052 to 102896076 24 - TSS region transcription start site region 25445
Gm23731 2 102897960 to 102898066 106 + snRNA gene predicted gene, 23731
Tssr25446 2 102897963 to 102897992 29 - TSS region transcription start site region 25446
Tssr19138 2 102899417 to 102899435 18 + TSS region transcription start site region 19138
Tssr25447 2 102900226 to 102900229 3 - TSS region transcription start site region 25447
Cpgi11979 2 102901229 to 102901596 367 CpG island CpG island 11979
Tssr25448 2 102901449 to 102901465 16 - TSS region transcription start site region 25448
Del(2Cd44-Hoxd11)43Ddu 2 102901665 to 74679558 -28222107 chromosomal deletion deletion, Chr 2, Denis Duboule 43
In(2Cd44;Hoxd11)2Ddu 2 102901665 to 74679558 -28222107 chromosomal inversion inversion, Chr 2, Denis Duboule 2
Tssr25449 2 102901996 to 102902031 35 - TSS region transcription start site region 25449
4933435N07Rik 2 102922931 to 102923739 808 unclassified gene RIKEN cDNA 4933435N07 gene
Tssr25450 2 102923727 to 102923740 13 - TSS region transcription start site region 25450
Tssr19139 2 102941054 to 102941077 23 + TSS region transcription start site region 19139
Gm34483 2 102941058 to 102960573 19515 + lncRNA gene predicted gene, 34483
Tssr19140 2 102944249 to 102944260 11 + TSS region transcription start site region 19140
Tssr579 2 102948024 to 102948060 36 + TSS region transcription start site region 579
Tssr19141 2 102948772 to 102948778 6 + TSS region transcription start site region 19141
Tssr25451 2 102967530 to 102967537 7 - TSS region transcription start site region 25451
Tssr580 2 102968536 to 102968541 5 - TSS region transcription start site region 580
Tssr25452 2 102968544 to 102968549 5 - TSS region transcription start site region 25452
Tssr25453 2 102968582 to 102968590 8 - TSS region transcription start site region 25453
Tssr19142 2 102968707 to 102968716 9 + TSS region transcription start site region 19142
Tssr19143 2 102998577 to 102998587 10 + TSS region transcription start site region 19143
Tssr19144 2 102998593 to 102998604 11 + TSS region transcription start site region 19144
Tssr581 2 103008382 to 103008392 10 + TSS region transcription start site region 581
Tssr19145 2 103009583 to 103009628 45 + TSS region transcription start site region 19145