Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:100816451-102776471

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D2Mit384 2 101088230 to 101088347 117 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 384
D2Mit440 2 101155182 to 101155293 111 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 440
Skmw8 2 101178143 to 101178248 105 QTL skeletal muscle weight 8
D2Mit300 2 101178143 to 101178248 105 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 300
Vss 2 101178143 to 108259759 7081616 heritable phenotypic marker variable spot and size
Gm39886 2 101413261 to 101458277 45016 - lncRNA gene predicted gene, 39886
D2Mit438 2 101488192 to 101488310 118 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 438
D2Mit438.1 2 101488286 to 101488395 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 438.1
Gm39887 2 101549837 to 101557787 7950 - lncRNA gene predicted gene, 39887
Tssr19069 2 101550384 to 101550395 11 + TSS region transcription start site region 19069
B230118H07Rik 2 101560781 to 101629332 68551 - protein coding gene RIKEN cDNA B230118H07 gene
Tssr19070 2 101563319 to 101563333 14 + TSS region transcription start site region 19070
Gm20693 2 101570624 to 101570834 210 + pseudogene predicted gene 20693
Tssr19071 2 101581551 to 101581593 42 + TSS region transcription start site region 19071
A130042O14Rik 2 101600588 to 101604701 4113 unclassified non-coding RNA gene RIKEN cDNA A130042O14 gene
Tssr25358 2 101621033 to 101621066 33 - TSS region transcription start site region 25358
Tssr19072 2 101621781 to 101621792 11 + TSS region transcription start site region 19072
Tssr19073 2 101621795 to 101621811 16 + TSS region transcription start site region 19073
Tssr25359 2 101624091 to 101624094 3 - TSS region transcription start site region 25359
Tssr19074 2 101624677 to 101624695 18 + TSS region transcription start site region 19074
Tssr19075 2 101624696 to 101624730 34 + TSS region transcription start site region 19075
Tssr19076 2 101624734 to 101624756 22 + TSS region transcription start site region 19076
Rag2 2 101624748 to 101632528 7780 + protein coding gene recombination activating gene 2
Tssr19077 2 101624769 to 101624780 11 + TSS region transcription start site region 19077
Tssr19078 2 101627406 to 101627421 15 + TSS region transcription start site region 19078
Cpgi11969 2 101628713 to 101629023 310 CpG island CpG island 11969
Tssr25360 2 101628930 to 101628954 24 - TSS region transcription start site region 25360
Tssr25361 2 101628958 to 101629014 56 - TSS region transcription start site region 25361
Tssr25362 2 101629016 to 101629025 9 - TSS region transcription start site region 25362
Tssr25363 2 101629026 to 101629034 8 - TSS region transcription start site region 25363
Rag1 2 101638282 to 101649501 11219 - protein coding gene recombination activating 1
Tssr25364 2 101640102 to 101640123 21 - TSS region transcription start site region 25364
Tssr25365 2 101640226 to 101640236 10 - TSS region transcription start site region 25365
Tssr25366 2 101641267 to 101641278 11 - TSS region transcription start site region 25366
Tssr25367 2 101641563 to 101641577 14 - TSS region transcription start site region 25367
Tssr25368 2 101643589 to 101643598 9 - TSS region transcription start site region 25368
Tssr25369 2 101643729 to 101643741 12 - TSS region transcription start site region 25369
Tssr25370 2 101643912 to 101643919 7 - TSS region transcription start site region 25370
Tssr25371 2 101644181 to 101644192 11 - TSS region transcription start site region 25371
Cpgi11970 2 101644293 to 101644499 206 CpG island CpG island 11970
Tssr19079 2 101644392 to 101644435 43 + TSS region transcription start site region 19079
Tssr25372 2 101644857 to 101644872 15 - TSS region transcription start site region 25372
Tssr25373 2 101649417 to 101649422 5 - TSS region transcription start site region 25373
Tssr25374 2 101649523 to 101649539 16 - TSS region transcription start site region 25374
Tssr19080 2 101649697 to 101649728 31 + TSS region transcription start site region 19080
Tssr19081 2 101649731 to 101649749 18 + TSS region transcription start site region 19081
Tssr19082 2 101649825 to 101649830 5 + TSS region transcription start site region 19082
Tssr25375 2 101650676 to 101650680 4 - TSS region transcription start site region 25375
Gm34041 2 101657856 to 101665715 7859 - lncRNA gene predicted gene, 34041
Cpgi11971 2 101678135 to 101679083 948 CpG island CpG island 11971
Tssr19083 2 101678403 to 101678469 66 + TSS region transcription start site region 19083
Traf6 2 101678429 to 101701669 23240 + protein coding gene TNF receptor-associated factor 6
D2Mit161 2 101694497 to 101694645 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 161
Prr5l 2 101714285 to 101883027 168742 - protein coding gene proline rich 5 like
Tssr25376 2 101773046 to 101773049 3 - TSS region transcription start site region 25376
Cpgi11972 2 101796222 to 101797835 1613 CpG island CpG island 11972
Tssr25377 2 101796451 to 101796471 20 - TSS region transcription start site region 25377
Tssr576 2 101797648 to 101797653 5 - TSS region transcription start site region 576
Tssr25378 2 101797658 to 101797694 36 - TSS region transcription start site region 25378
Tssr25379 2 101820457 to 101820460 3 - TSS region transcription start site region 25379
Gm13905 2 101872175 to 101883256 11081 + lincRNA gene predicted gene 13905
Tssr25380 2 101883010 to 101883023 13 - TSS region transcription start site region 25380
Tssr25381 2 101883024 to 101883042 18 - TSS region transcription start site region 25381
D2Mit249 2 101883736 to 101883882 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 249
Cpgi11973 2 101886057 to 101886483 426 CpG island CpG island 11973
Tssr19084 2 101886249 to 101886269 20 + TSS region transcription start site region 19084
Commd9 2 101886262 to 101901639 15377 + protein coding gene COMM domain containing 9
Ldlrad3 2 101950203 to 102186385 236182 - protein coding gene low density lipoprotein receptor class A domain containing 3
Tssr25382 2 101950598 to 101950618 20 - TSS region transcription start site region 25382
Tssr19085 2 101965157 to 101965159 2 + TSS region transcription start site region 19085
Tssr25383 2 101982009 to 101982013 4 - TSS region transcription start site region 25383
Gm39888 2 101986093 to 102012609 26516 + lncRNA gene predicted gene, 39888
Tssr19086 2 101991945 to 101991953 8 + TSS region transcription start site region 19086
Tssr19087 2 101991963 to 101991984 21 + TSS region transcription start site region 19087
Tssr19088 2 101992162 to 101992172 10 + TSS region transcription start site region 19088
Tssr19089 2 102039595 to 102039597 2 + TSS region transcription start site region 19089
Tssr19090 2 102039616 to 102039636 20 + TSS region transcription start site region 19090
Gm13919 2 102039629 to 102066725 27096 + antisense lncRNA gene predicted gene 13919
Tssr19091 2 102039646 to 102039659 13 + TSS region transcription start site region 19091
Tssr25384 2 102050495 to 102050499 4 - TSS region transcription start site region 25384
Tssr25385 2 102057495 to 102057499 4 - TSS region transcription start site region 25385
Gm13920 2 102057587 to 102061430 3843 + antisense lncRNA gene predicted gene 13920
Tssr25386 2 102076421 to 102076437 16 - TSS region transcription start site region 25386
Tssr25387 2 102137970 to 102137984 14 - TSS region transcription start site region 25387
D2Mit251 2 102172482 to 102172602 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 251
Gm13921 2 102174290 to 102174752 462 + pseudogene predicted gene 13921
1700082C01Rik 2 102185350 to 102186054 704 unclassified gene RIKEN cDNA 1700082C01 gene
Cpgi11974 2 102185505 to 102186621 1116 CpG island CpG island 11974
Tssr25388 2 102186322 to 102186394 72 - TSS region transcription start site region 25388
Gm13866 2 102209412 to 102210379 967 - pseudogene predicted gene 13866
Gm34268 2 102241935 to 102246963 5028 - lncRNA gene predicted gene, 34268
Tssr19092 2 102287382 to 102287390 8 + TSS region transcription start site region 19092
Trim44 2 102300119 to 102400900 100781 - protein coding gene tripartite motif-containing 44
Gm13868 2 102311914 to 102312207 293 - pseudogene predicted gene 13868
Tssr25389 2 102385578 to 102385581 3 - TSS region transcription start site region 25389
Cpgi11975 2 102400002 to 102401398 1396 CpG island CpG island 11975
Tssr19093 2 102400208 to 102400360 152 + TSS region transcription start site region 19093
Tssr25390 2 102400385 to 102400396 11 - TSS region transcription start site region 25390
Tssr25391 2 102400405 to 102400420 15 - TSS region transcription start site region 25391
Tssr25392 2 102400456 to 102400469 13 - TSS region transcription start site region 25392
Tssr25393 2 102400532 to 102400539 7 - TSS region transcription start site region 25393
Tssr25394 2 102400863 to 102400970 107 - TSS region transcription start site region 25394
Tssr25395 2 102400991 to 102401109 118 - TSS region transcription start site region 25395
Tssr25396 2 102401157 to 102401210 53 - TSS region transcription start site region 25396
Gm39890 2 102407391 to 102412267 4876 - lncRNA gene predicted gene, 39890
Fjx1 2 102449366 to 102451792 2426 - protein coding gene four jointed box 1
Cpgi11976 2 102450165 to 102452280 2115 CpG island CpG island 11976
Tssr25397 2 102451760 to 102451774 14 - TSS region transcription start site region 25397
Tssr25398 2 102451797 to 102451815 18 - TSS region transcription start site region 25398
Tssr25399 2 102451826 to 102451843 17 - TSS region transcription start site region 25399
Cpgi11977 2 102549766 to 102550263 497 CpG island CpG island 11977
Pamr1 2 102550012 to 102643041 93029 + protein coding gene peptidase domain containing associated with muscle regeneration 1
Tssr19094 2 102550045 to 102550080 35 + TSS region transcription start site region 19094
Tssr19095 2 102550099 to 102550113 14 + TSS region transcription start site region 19095
Tssr19096 2 102550117 to 102550128 11 + TSS region transcription start site region 19096
Tssr19097 2 102550138 to 102550168 30 + TSS region transcription start site region 19097
Tssr25400 2 102568922 to 102568927 5 - TSS region transcription start site region 25400
Tssr25401 2 102568938 to 102568949 11 - TSS region transcription start site region 25401
Tssr577 2 102568956 to 102568960 4 - TSS region transcription start site region 577
D2Ertd282e 2 102615323 to 102615540 217 DNA segment DNA segment, Chr 2, ERATO Doi 282, expressed
Tssr19098 2 102658228 to 102658239 11 + TSS region transcription start site region 19098
Tssr19099 2 102658280 to 102658311 31 + TSS region transcription start site region 19099
Tssr19100 2 102658576 to 102658580 4 + TSS region transcription start site region 19100
Cpgi11978 2 102658594 to 102659755 1161 CpG island CpG island 11978
Tssr19101 2 102658640 to 102658669 29 + TSS region transcription start site region 19101
Slc1a2 2 102658659 to 102790784 132125 + protein coding gene solute carrier family 1 (glial high affinity glutamate transporter), member 2
Tssr19102 2 102658677 to 102658695 18 + TSS region transcription start site region 19102
Tssr19103 2 102658726 to 102658742 16 + TSS region transcription start site region 19103
Tssr19104 2 102658752 to 102658764 12 + TSS region transcription start site region 19104
Tssr19105 2 102658818 to 102658834 16 + TSS region transcription start site region 19105
Tssr19106 2 102658843 to 102658852 9 + TSS region transcription start site region 19106
Tssr19107 2 102658854 to 102658872 18 + TSS region transcription start site region 19107
Tssr19108 2 102658897 to 102658908 11 + TSS region transcription start site region 19108
Tssr19109 2 102658933 to 102658950 17 + TSS region transcription start site region 19109
Tssr19110 2 102659213 to 102659232 19 + TSS region transcription start site region 19110
Tssr19111 2 102675514 to 102675525 11 + TSS region transcription start site region 19111
Tssr19112 2 102675547 to 102675557 10 + TSS region transcription start site region 19112
Tssr19113 2 102686096 to 102686130 34 + TSS region transcription start site region 19113
Tssr19114 2 102691328 to 102691329 1 + TSS region transcription start site region 19114
Tssr19115 2 102706414 to 102706430 16 + TSS region transcription start site region 19115
Tssr25402 2 102739837 to 102739858 21 - TSS region transcription start site region 25402
Gm13872 2 102744286 to 102747371 3085 - antisense lncRNA gene predicted gene 13872
Tssr25403 2 102746712 to 102746717 5 - TSS region transcription start site region 25403
Tssr25404 2 102746731 to 102746736 5 - TSS region transcription start site region 25404
Tssr25405 2 102746739 to 102746751 12 - TSS region transcription start site region 25405
Tssr25406 2 102746755 to 102746764 9 - TSS region transcription start site region 25406