Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:9990223-10596440

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163 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr155011 19 9991589 to 9991590 1 + TSS region transcription start site region 155011
Cpgi10596 19 9992751 to 9993316 565 CpG island CpG island 10596
Tssr158145 19 9992956 to 9992993 37 - TSS region transcription start site region 158145
Tssr158146 19 10001561 to 10001582 21 - TSS region transcription start site region 158146
Tssr158147 19 10001585 to 10001622 37 - TSS region transcription start site region 158147
Tssr158148 19 10001625 to 10001632 7 - TSS region transcription start site region 158148
Best1 19 10001633 to 9985174 -16459 - protein coding gene bestrophin 1
Rab3il1 19 10001674 to 10038380 36706 + protein coding gene RAB3A interacting protein (rabin3)-like 1
Tssr155012 19 10001692 to 10001703 11 + TSS region transcription start site region 155012
Tssr5440 19 10001705 to 10001712 7 + TSS region transcription start site region 5440
Tssr155013 19 10001718 to 10001732 14 + TSS region transcription start site region 155013
Tssr155014 19 10015039 to 10015055 16 + TSS region transcription start site region 155014
Cpgi10597 19 10017759 to 10018616 857 CpG island CpG island 10597
Tssr155015 19 10018220 to 10018237 17 + TSS region transcription start site region 155015
Tssr155016 19 10018241 to 10018257 16 + TSS region transcription start site region 155016
Tssr155017 19 10018265 to 10018276 11 + TSS region transcription start site region 155017
Tssr155018 19 10022769 to 10022799 30 + TSS region transcription start site region 155018
Tssr155019 19 10028464 to 10028477 13 + TSS region transcription start site region 155019
Tssr155020 19 10034672 to 10034689 17 + TSS region transcription start site region 155020
Cpgi10598 19 10040911 to 10042559 1648 CpG island CpG island 10598
Fads3 19 10041548 to 10059671 18123 + protein coding gene fatty acid desaturase 3
Tssr155021 19 10041551 to 10041581 30 + TSS region transcription start site region 155021
Tssr155022 19 10041660 to 10041680 20 + TSS region transcription start site region 155022
Gm29917 19 10046264 to 10047940 1676 - lncRNA gene predicted gene, 29917
D19Mit51 19 10050002 to 10050083 81 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 51
D19Dcr74 19 10051259 to 10051354 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 74
Tssr158149 19 10060408 to 10060426 18 - TSS region transcription start site region 158149
Tssr158150 19 10064146 to 10064200 54 - TSS region transcription start site region 158150
Fads2 19 10064164 to 10101503 37339 - protein coding gene fatty acid desaturase 2
Tssr158151 19 10064776 to 10064815 39 - TSS region transcription start site region 158151
Tssr158152 19 10065690 to 10065731 41 - TSS region transcription start site region 158152
Tssr158153 19 10066589 to 10066603 14 - TSS region transcription start site region 158153
Tssr5441 19 10077446 to 10077450 4 + TSS region transcription start site region 5441
D19Mit42 19 10083005 to 10083182 177 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 42
Tssr158154 19 10088964 to 10088999 35 - TSS region transcription start site region 158154
Tssr158155 19 10091797 to 10091822 25 - TSS region transcription start site region 158155
Tssr158156 19 10092195 to 10092204 9 - TSS region transcription start site region 158156
Tssr158157 19 10092205 to 10092217 12 - TSS region transcription start site region 158157
Cpgi10599 19 10100658 to 10102241 1583 CpG island CpG island 10599
Tssr5442 19 10101256 to 10101269 13 - TSS region transcription start site region 5442
Tssr158158 19 10101501 to 10101532 31 - TSS region transcription start site region 158158
Tssr158159 19 10101552 to 10101559 7 - TSS region transcription start site region 158159
Tssr158160 19 10101727 to 10101750 23 - TSS region transcription start site region 158160
Tssr158161 19 10101809 to 10101820 11 - TSS region transcription start site region 158161
Tssr158162 19 10101832 to 10101839 7 - TSS region transcription start site region 158162
Tssr158163 19 10121969 to 10121974 5 - TSS region transcription start site region 158163
Tssr155023 19 10177397 to 10177403 6 + TSS region transcription start site region 155023
Cpgi10600 19 10182204 to 10183945 1741 CpG island CpG island 10600
Tssr155024 19 10182868 to 10182879 11 + TSS region transcription start site region 155024
Tssr155025 19 10182885 to 10182896 11 + TSS region transcription start site region 155025
Fads1 19 10182888 to 10196870 13982 + protein coding gene fatty acid desaturase 1
Tssr155026 19 10182906 to 10182917 11 + TSS region transcription start site region 155026
Tssr155027 19 10182921 to 10182969 48 + TSS region transcription start site region 155027
Tssr155028 19 10182994 to 10183005 11 + TSS region transcription start site region 155028
Tssr155029 19 10183007 to 10183036 29 + TSS region transcription start site region 155029
Tssr155030 19 10183037 to 10183048 11 + TSS region transcription start site region 155030
Tssr155031 19 10183147 to 10183156 9 + TSS region transcription start site region 155031
Tssr158164 19 10183456 to 10183469 13 - TSS region transcription start site region 158164
Tssr155032 19 10183522 to 10183546 24 + TSS region transcription start site region 155032
Tssr155033 19 10186147 to 10186162 15 + TSS region transcription start site region 155033
Tssr155034 19 10186824 to 10186835 11 + TSS region transcription start site region 155034
Mir6993 19 10191375 to 10191439 64 + miRNA gene microRNA 6993
Tssr155035 19 10193757 to 10193771 14 + TSS region transcription start site region 155035
Tssr155036 19 10195234 to 10195257 23 + TSS region transcription start site region 155036
Gm10143 19 10198368 to 10202384 4016 + unclassified non-coding RNA gene predicted gene 10143
Fen1 19 10199132 to 10204169 5037 - protein coding gene flap structure specific endonuclease 1
Cpgi10601 19 10203594 to 10204473 879 CpG island CpG island 10601
Tssr158165 19 10203856 to 10203870 14 - TSS region transcription start site region 158165
Tssr158166 19 10203880 to 10203948 68 - TSS region transcription start site region 158166
Tssr155037 19 10204180 to 10204191 11 + TSS region transcription start site region 155037
Tssr155038 19 10204201 to 10204237 36 + TSS region transcription start site region 155038
Tmem258 19 10204202 to 10207824 3622 + protein coding gene transmembrane protein 258
Tssr155039 19 10204238 to 10204249 11 + TSS region transcription start site region 155039
Tssr158167 19 10204390 to 10204413 23 - TSS region transcription start site region 158167
Tssr155040 19 10206460 to 10206479 19 + TSS region transcription start site region 155040
Myrf 19 10208272 to 10240748 32476 - protein coding gene myelin regulatory factor
Tssr158168 19 10223566 to 10223572 6 - TSS region transcription start site region 158168
Cpgi10602 19 10225193 to 10225426 233 CpG island CpG island 10602
Tssr158169 19 10225247 to 10225262 15 - TSS region transcription start site region 158169
Tssr158170 19 10228771 to 10228793 22 - TSS region transcription start site region 158170
Tssr158171 19 10231040 to 10231052 12 - TSS region transcription start site region 158171
Tssr158172 19 10237959 to 10237972 13 - TSS region transcription start site region 158172
Tssr158173 19 10237973 to 10237984 11 - TSS region transcription start site region 158173
Cpgi10603 19 10240038 to 10241128 1090 CpG island CpG island 10603
Tssr158174 19 10240689 to 10240751 62 - TSS region transcription start site region 158174
Tssr158175 19 10240762 to 10240776 14 - TSS region transcription start site region 158175
D19Mit115 19 10242776 to 10242893 117 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 115
Dagla 19 10245265 to 10304877 59612 - protein coding gene diacylglycerol lipase, alpha
Tssr158176 19 10272930 to 10272933 3 - TSS region transcription start site region 158176
Cpgi10604 19 10277395 to 10277598 203 CpG island CpG island 10604
Gm30042 19 10290223 to 10296440 6217 + lncRNA gene predicted gene, 30042
Cpgi10605 19 10304272 to 10305563 1291 CpG island CpG island 10605
Tssr158177 19 10304854 to 10304865 11 - TSS region transcription start site region 158177
Tssr158178 19 10304867 to 10304954 87 - TSS region transcription start site region 158178
Gm30263 19 10362065 to 10366277 4212 - lncRNA gene predicted gene, 30263
Cpgi10606 19 10388450 to 10390097 1647 CpG island CpG island 10606
Tssr155041 19 10388999 to 10389063 64 + TSS region transcription start site region 155041
Tssr155042 19 10389068 to 10389084 16 + TSS region transcription start site region 155042
Tssr5443 19 10389086 to 10389100 14 + TSS region transcription start site region 5443
Syt7 19 10389090 to 10453181 64091 + protein coding gene synaptotagmin VII
Gm26859 19 10389130 to 10391735 2605 - lincRNA gene predicted gene, 26859
Tssr155043 19 10389205 to 10389214 9 + TSS region transcription start site region 155043
Tssr155044 19 10389218 to 10389233 15 + TSS region transcription start site region 155044
Tssr155045 19 10389236 to 10389259 23 + TSS region transcription start site region 155045
Tssr155046 19 10389270 to 10389291 21 + TSS region transcription start site region 155046
Tssr155047 19 10389386 to 10389441 55 + TSS region transcription start site region 155047
Tssr155048 19 10403981 to 10403996 15 + TSS region transcription start site region 155048
Cpgi10607 19 10422128 to 10422527 399 CpG island CpG island 10607
Cpgi10608 19 10422528 to 10423119 591 CpG island CpG island 10608
Tssr155049 19 10426023 to 10426034 11 + TSS region transcription start site region 155049
Tssr155050 19 10426144 to 10426157 13 + TSS region transcription start site region 155050
Cpgi10609 19 10426152 to 10426544 392 CpG island CpG island 10609
Tssr155051 19 10435190 to 10435206 16 + TSS region transcription start site region 155051
Lrrc10b 19 10455371 to 10457447 2076 - protein coding gene leucine rich repeat containing 10B
Cpgi10610 19 10456225 to 10458079 1854 CpG island CpG island 10610
Tssr158179 19 10457545 to 10457557 12 - TSS region transcription start site region 158179
Tssr158180 19 10457565 to 10457584 19 - TSS region transcription start site region 158180
Tssr158181 19 10461434 to 10461437 3 - TSS region transcription start site region 158181
Tssr158182 19 10462277 to 10462287 10 - TSS region transcription start site region 158182
Tssr158183 19 10462307 to 10462312 5 - TSS region transcription start site region 158183
Ppp1r32 19 10474257 to 10482897 8640 - protein coding gene protein phosphatase 1, regulatory subunit 32
Tssr158184 19 10482669 to 10482708 39 - TSS region transcription start site region 158184
Tssr158185 19 10482874 to 10482938 64 - TSS region transcription start site region 158185
Sdhaf2 19 10500513 to 10525209 24696 - protein coding gene succinate dehydrogenase complex assembly factor 2
Cpgi10611 19 10524679 to 10525920 1241 CpG island CpG island 10611
Tssr158186 19 10525104 to 10525150 46 - TSS region transcription start site region 158186
Tssr158187 19 10525151 to 10525181 30 - TSS region transcription start site region 158187
Tssr158188 19 10525182 to 10525197 15 - TSS region transcription start site region 158188
Tssr158189 19 10525201 to 10525214 13 - TSS region transcription start site region 158189
Cpsf7 19 10525244 to 10547735 22491 + protein coding gene cleavage and polyadenylation specific factor 7
Tssr155052 19 10525250 to 10525305 55 + TSS region transcription start site region 155052
Tssr155053 19 10525315 to 10525326 11 + TSS region transcription start site region 155053
Tssr155054 19 10525584 to 10525605 21 + TSS region transcription start site region 155054
Tssr158190 19 10525701 to 10525732 31 - TSS region transcription start site region 158190
Tssr155055 19 10535435 to 10535444 9 + TSS region transcription start site region 155055
Tmem216 19 10539403 to 10556303 16900 - protein coding gene transmembrane protein 216
Tssr158191 19 10554790 to 10554834 44 - TSS region transcription start site region 158191
Tssr155056 19 10554964 to 10554973 9 + TSS region transcription start site region 155056
Cpgi10612 19 10555594 to 10556205 611 CpG island CpG island 10612
Tssr158192 19 10555724 to 10555761 37 - TSS region transcription start site region 158192
Tssr5444 19 10555762 to 10555782 20 - TSS region transcription start site region 5444
Tssr158193 19 10555808 to 10555814 6 - TSS region transcription start site region 158193
Tssr158194 19 10556198 to 10556275 77 - TSS region transcription start site region 158194
Tmem138 19 10570478 to 10577362 6884 - protein coding gene transmembrane protein 138
Cpgi10613 19 10576811 to 10577782 971 CpG island CpG island 10613
Tssr158195 19 10577053 to 10577095 42 - TSS region transcription start site region 158195
Tssr158196 19 10577098 to 10577120 22 - TSS region transcription start site region 158196
Tssr155057 19 10577147 to 10577175 28 + TSS region transcription start site region 155057
Tssr155058 19 10577180 to 10577196 16 + TSS region transcription start site region 155058
Tssr158197 19 10577367 to 10577407 40 - TSS region transcription start site region 158197
Tssr155059 19 10577439 to 10577461 22 + TSS region transcription start site region 155059
Cyb561a3 19 10577454 to 10588548 11094 + protein coding gene cytochrome b561 family, member A3
Tssr155060 19 10577464 to 10577475 11 + TSS region transcription start site region 155060
Tssr155061 19 10577481 to 10577492 11 + TSS region transcription start site region 155061
Tssr155062 19 10582184 to 10582207 23 + TSS region transcription start site region 155062
Tssr155063 19 10582221 to 10582252 31 + TSS region transcription start site region 155063
Tssr155064 19 10582270 to 10582280 10 + TSS region transcription start site region 155064
Tssr155065 19 10582281 to 10582313 32 + TSS region transcription start site region 155065
Tssr155066 19 10582315 to 10582325 10 + TSS region transcription start site region 155066
Tssr155067 19 10589109 to 10589119 10 + TSS region transcription start site region 155067
Tkfc 19 10592200 to 10604258 12058 - protein coding gene triokinase, FMN cyclase
Tssr158198 19 10592523 to 10592552 29 - TSS region transcription start site region 158198
Tssr158199 19 10593175 to 10593186 11 - TSS region transcription start site region 158199