Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:8883090-8931663

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr154869 19 8883848 to 8883861 13 + TSS region transcription start site region 154869
Tssr154870 19 8883865 to 8883909 44 + TSS region transcription start site region 154870
Lbhd1 19 8883878 to 8890759 6881 + protein coding gene LBH domain containing 1
Tssr154871 19 8883910 to 8883928 18 + TSS region transcription start site region 154871
Gm49403 19 8883930 to 8887258 3328 + protein coding gene predicted gene, 49403
5730408K05Rik 19 8888387 to 8888770 383 - lncRNA gene RIKEN cDNA 5730408K05 gene
Cpgi10582 19 8888388 to 8889343 955 CpG island CpG island 10582
Snora57 19 8888538 to 8888685 147 - snoRNA gene small nucleolar RNA, H/ACA box 57
Mir5136 19 8888699 to 8888774 75 - miRNA gene microRNA 5136
Tssr158077 19 8888769 to 8888770 1 - TSS region transcription start site region 158077
Tssr154872 19 8888880 to 8888925 45 + TSS region transcription start site region 154872
1810009A15Rik 19 8888883 to 8890759 1876 + protein coding gene RIKEN cDNA 1810009A15 gene
Gm49416 19 8888926 to 8895227 6301 + protein coding gene predicted gene, 49416
Tssr154873 19 8888946 to 8888953 7 + TSS region transcription start site region 154873
Cpgi10583 19 8892708 to 8893417 709 CpG island CpG island 10583
Ints5 19 8892987 to 8897890 4903 + protein coding gene integrator complex subunit 5
Tssr154874 19 8892998 to 8893052 54 + TSS region transcription start site region 154874
Cpgi10584 19 8897649 to 8898630 981 CpG island CpG island 10584
Ganab 19 8898090 to 8916663 18573 + protein coding gene alpha glucosidase 2 alpha neutral subunit
Tssr154875 19 8898095 to 8898122 27 + TSS region transcription start site region 154875
Tssr154876 19 8904986 to 8905015 29 + TSS region transcription start site region 154876
Tssr154877 19 8915756 to 8915783 27 + TSS region transcription start site region 154877
Gm36629 19 8918937 to 8921842 2905 - lncRNA gene predicted gene, 36629
Cpgi10585 19 8920085 to 8920941 856 CpG island CpG island 10585
Tssr154878 19 8920358 to 8920426 68 + TSS region transcription start site region 154878
B3gat3 19 8920393 to 8927236 6843 + protein coding gene beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)
Tssr154879 19 8920432 to 8920446 14 + TSS region transcription start site region 154879
Tssr154880 19 8920461 to 8920473 12 + TSS region transcription start site region 154880
Tssr154881 19 8920496 to 8920575 79 + TSS region transcription start site region 154881
Tssr158078 19 8921843 to 8921851 8 - TSS region transcription start site region 158078
Tssr154882 19 8922057 to 8922074 17 + TSS region transcription start site region 154882
Tssr154883 19 8922124 to 8922136 12 + TSS region transcription start site region 154883
Tssr154884 19 8926923 to 8926926 3 + TSS region transcription start site region 154884
Rom1 19 8927382 to 8929356 1974 - protein coding gene rod outer segment membrane protein 1
Cpgi10586 19 8928924 to 8930455 1531 CpG island CpG island 10586
Tssr158079 19 8929181 to 8929204 23 - TSS region transcription start site region 158079
Tssr158080 19 8929323 to 8929337 14 - TSS region transcription start site region 158080
Tssr154885 19 8929413 to 8929448 35 + TSS region transcription start site region 154885
Tssr154886 19 8929450 to 8929477 27 + TSS region transcription start site region 154886
Tssr154887 19 8929554 to 8929581 27 + TSS region transcription start site region 154887
Tssr154888 19 8929628 to 8929694 66 + TSS region transcription start site region 154888
Eml3 19 8929694 to 8941582 11888 + protein coding gene echinoderm microtubule associated protein like 3
Tssr154889 19 8929841 to 8929866 25 + TSS region transcription start site region 154889