Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:8856719-9390566

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi10580 19 8871385 to 8872126 741 CpG island CpG island 10580
Tssr154863 19 8871512 to 8871559 47 + TSS region transcription start site region 154863
Ubxn1 19 8871559 to 8875663 4104 + protein coding gene UBX domain protein 1
Tssr154864 19 8871560 to 8871598 38 + TSS region transcription start site region 154864
Tssr154865 19 8871605 to 8871616 11 + TSS region transcription start site region 154865
Tssr154866 19 8871617 to 8871628 11 + TSS region transcription start site region 154866
Tssr154867 19 8871636 to 8871686 50 + TSS region transcription start site region 154867
Tssr154868 19 8873559 to 8873584 25 + TSS region transcription start site region 154868
Uqcc3 19 8880016 to 8880933 917 - protein coding gene ubiquinol-cytochrome c reductase complex assembly factor 3
Cpgi10581 19 8880189 to 8880957 768 CpG island CpG island 10581
Tssr158075 19 8880832 to 8880854 22 - TSS region transcription start site region 158075
Tssr158076 19 8880883 to 8880928 45 - TSS region transcription start site region 158076
Tssr154869 19 8883848 to 8883861 13 + TSS region transcription start site region 154869
Tssr154870 19 8883865 to 8883909 44 + TSS region transcription start site region 154870
Lbhd1 19 8883878 to 8890759 6881 + protein coding gene LBH domain containing 1
Tssr154871 19 8883910 to 8883928 18 + TSS region transcription start site region 154871
Gm49403 19 8883930 to 8887258 3328 + protein coding gene predicted gene, 49403
5730408K05Rik 19 8888387 to 8888770 383 - lncRNA gene RIKEN cDNA 5730408K05 gene
Cpgi10582 19 8888388 to 8889343 955 CpG island CpG island 10582
Snora57 19 8888538 to 8888685 147 - snoRNA gene small nucleolar RNA, H/ACA box 57
Mir5136 19 8888699 to 8888774 75 - miRNA gene microRNA 5136
Tssr158077 19 8888769 to 8888770 1 - TSS region transcription start site region 158077
Tssr154872 19 8888880 to 8888925 45 + TSS region transcription start site region 154872
1810009A15Rik 19 8888883 to 8890759 1876 + protein coding gene RIKEN cDNA 1810009A15 gene
Gm49416 19 8888926 to 8895227 6301 + protein coding gene predicted gene, 49416
Tssr154873 19 8888946 to 8888953 7 + TSS region transcription start site region 154873
Cpgi10583 19 8892708 to 8893417 709 CpG island CpG island 10583
Ints5 19 8892987 to 8897890 4903 + protein coding gene integrator complex subunit 5
Tssr154874 19 8892998 to 8893052 54 + TSS region transcription start site region 154874
Cpgi10584 19 8897649 to 8898630 981 CpG island CpG island 10584
Ganab 19 8898090 to 8916663 18573 + protein coding gene alpha glucosidase 2 alpha neutral subunit
Tssr154875 19 8898095 to 8898122 27 + TSS region transcription start site region 154875
Tssr154876 19 8904986 to 8905015 29 + TSS region transcription start site region 154876
Tssr154877 19 8915756 to 8915783 27 + TSS region transcription start site region 154877
Gm36629 19 8918937 to 8921842 2905 - lncRNA gene predicted gene, 36629
Cpgi10585 19 8920085 to 8920941 856 CpG island CpG island 10585
Tssr154878 19 8920358 to 8920426 68 + TSS region transcription start site region 154878
B3gat3 19 8920393 to 8927236 6843 + protein coding gene beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)
Tssr154879 19 8920432 to 8920446 14 + TSS region transcription start site region 154879
Tssr154880 19 8920461 to 8920473 12 + TSS region transcription start site region 154880
Tssr154881 19 8920496 to 8920575 79 + TSS region transcription start site region 154881
Tssr158078 19 8921843 to 8921851 8 - TSS region transcription start site region 158078
Tssr154882 19 8922057 to 8922074 17 + TSS region transcription start site region 154882
Tssr154883 19 8922124 to 8922136 12 + TSS region transcription start site region 154883
Tssr154884 19 8926923 to 8926926 3 + TSS region transcription start site region 154884
Rom1 19 8927382 to 8929356 1974 - protein coding gene rod outer segment membrane protein 1
Cpgi10586 19 8928924 to 8930455 1531 CpG island CpG island 10586
Tssr158079 19 8929181 to 8929204 23 - TSS region transcription start site region 158079
Tssr158080 19 8929323 to 8929337 14 - TSS region transcription start site region 158080
Tssr154885 19 8929413 to 8929448 35 + TSS region transcription start site region 154885
Tssr154886 19 8929450 to 8929477 27 + TSS region transcription start site region 154886
Tssr154887 19 8929554 to 8929581 27 + TSS region transcription start site region 154887
Tssr154888 19 8929628 to 8929694 66 + TSS region transcription start site region 154888
Eml3 19 8929694 to 8941582 11888 + protein coding gene echinoderm microtubule associated protein like 3
Tssr154889 19 8929841 to 8929866 25 + TSS region transcription start site region 154889
Tssr154890 19 8932449 to 8932487 38 + TSS region transcription start site region 154890
Gm10353 19 8936975 to 8940864 3889 - antisense lncRNA gene predicted gene 10353
Tssr154891 19 8939556 to 8939559 3 + TSS region transcription start site region 154891
Cpgi10587 19 8941592 to 8942754 1162 CpG island CpG island 10587
Tssr154892 19 8941845 to 8941852 7 + TSS region transcription start site region 154892
Tssr154893 19 8941865 to 8942050 185 + TSS region transcription start site region 154893
Mta2 19 8941920 to 8952300 10380 + protein coding gene metastasis-associated gene family, member 2
Tssr154894 19 8942161 to 8942172 11 + TSS region transcription start site region 154894
Tssr154895 19 8942239 to 8942250 11 + TSS region transcription start site region 154895
Tssr158081 19 8942366 to 8942411 45 - TSS region transcription start site region 158081
Tssr154896 19 8942485 to 8942514 29 + TSS region transcription start site region 154896
Tssr154897 19 8942521 to 8942542 21 + TSS region transcription start site region 154897
Tssr154898 19 8943117 to 8943120 3 + TSS region transcription start site region 154898
Tssr154899 19 8943559 to 8943564 5 + TSS region transcription start site region 154899
Tssr154900 19 8952070 to 8952085 15 + TSS region transcription start site region 154900
Cpgi10588 19 8953460 to 8954102 642 CpG island CpG island 10588
Tssr154901 19 8953826 to 8953856 30 + TSS region transcription start site region 154901
Tut1 19 8953850 to 8966207 12357 + protein coding gene terminal uridylyl transferase 1, U6 snRNA-specific
Tssr154902 19 8953861 to 8953884 23 + TSS region transcription start site region 154902
Tssr154903 19 8953886 to 8953938 52 + TSS region transcription start site region 154903
Tssr154904 19 8953977 to 8953991 14 + TSS region transcription start site region 154904
Cpgi10589 19 8966613 to 8967437 824 CpG island CpG island 10589
Tssr154905 19 8966721 to 8966735 14 + TSS region transcription start site region 154905
Tssr154906 19 8966999 to 8967019 20 + TSS region transcription start site region 154906
Tssr154907 19 8967031 to 8967050 19 + TSS region transcription start site region 154907
Eef1g 19 8967041 to 8978180 11139 + protein coding gene eukaryotic translation elongation factor 1 gamma
Tssr154908 19 8967064 to 8967077 13 + TSS region transcription start site region 154908
Tssr154909 19 8967079 to 8967102 23 + TSS region transcription start site region 154909
Tssr154910 19 8967109 to 8967171 62 + TSS region transcription start site region 154910
Tssr154911 19 8967175 to 8967208 33 + TSS region transcription start site region 154911
Tssr154912 19 8970560 to 8970565 5 + TSS region transcription start site region 154912
Tssr158082 19 8984425 to 8984437 12 - TSS region transcription start site region 158082
Tssr154913 19 8984836 to 8984882 46 + TSS region transcription start site region 154913
Cpgi10590 19 8988873 to 8990000 1127 CpG island CpG island 10590
Tssr154914 19 8989021 to 8989064 43 + TSS region transcription start site region 154914
Tssr154915 19 8989277 to 8989295 18 + TSS region transcription start site region 154915
Ahnak 19 8989284 to 9076919 87635 + protein coding gene AHNAK nucleoprotein (desmoyokin)
Tssr154916 19 8989327 to 8989338 11 + TSS region transcription start site region 154916
Tssr154917 19 8990238 to 8990261 23 + TSS region transcription start site region 154917
Tssr154918 19 8990268 to 8990313 45 + TSS region transcription start site region 154918
Tssr154919 19 8990600 to 8990616 16 + TSS region transcription start site region 154919
Tssr154920 19 8990644 to 8990658 14 + TSS region transcription start site region 154920
Tssr154921 19 8993348 to 8993368 20 + TSS region transcription start site region 154921
Tssr154922 19 8997885 to 8997905 20 + TSS region transcription start site region 154922
Tssr158083 19 8999691 to 8999737 46 - TSS region transcription start site region 158083
Tssr158084 19 9000122 to 9000148 26 - TSS region transcription start site region 158084
Tssr154923 19 9000685 to 9000699 14 + TSS region transcription start site region 154923
Tssr154924 19 9001775 to 9001806 31 + TSS region transcription start site region 154924
Tssr158085 19 9001780 to 9001802 22 - TSS region transcription start site region 158085
Tssr154925 19 9002405 to 9002417 12 + TSS region transcription start site region 154925
Tssr154926 19 9002463 to 9002509 46 + TSS region transcription start site region 154926
Tssr154927 19 9002644 to 9002657 13 + TSS region transcription start site region 154927
Tssr154928 19 9002708 to 9002732 24 + TSS region transcription start site region 154928
Tssr154929 19 9002760 to 9002791 31 + TSS region transcription start site region 154929
Tssr154930 19 9002801 to 9002837 36 + TSS region transcription start site region 154930
Tssr158086 19 9002947 to 9002967 20 - TSS region transcription start site region 158086
Tssr154931 19 9003061 to 9003101 40 + TSS region transcription start site region 154931
Tssr154932 19 9003125 to 9003136 11 + TSS region transcription start site region 154932
Tssr158087 19 9003496 to 9003539 43 - TSS region transcription start site region 158087
Tssr154933 19 9003754 to 9003766 12 + TSS region transcription start site region 154933
Tssr154934 19 9003814 to 9003829 15 + TSS region transcription start site region 154934
Tssr154935 19 9003873 to 9003884 11 + TSS region transcription start site region 154935
Tssr154936 19 9004039 to 9004052 13 + TSS region transcription start site region 154936
Tssr154937 19 9004135 to 9004150 15 + TSS region transcription start site region 154937
Tssr154938 19 9004419 to 9004446 27 + TSS region transcription start site region 154938
Tssr154939 19 9005704 to 9005708 4 + TSS region transcription start site region 154939
Tssr154940 19 9005902 to 9005935 33 + TSS region transcription start site region 154940
Tssr154941 19 9005936 to 9005993 57 + TSS region transcription start site region 154941
Tssr154942 19 9006459 to 9006471 12 + TSS region transcription start site region 154942
Tssr154943 19 9006923 to 9006942 19 + TSS region transcription start site region 154943
Tssr154944 19 9010615 to 9010635 20 + TSS region transcription start site region 154944
Tssr154945 19 9010811 to 9010838 27 + TSS region transcription start site region 154945
Tssr154946 19 9013412 to 9013433 21 + TSS region transcription start site region 154946
Tssr154947 19 9015385 to 9015431 46 + TSS region transcription start site region 154947
Tssr154948 19 9015436 to 9015453 17 + TSS region transcription start site region 154948
Tssr154949 19 9015496 to 9015545 49 + TSS region transcription start site region 154949
Tssr154950 19 9015700 to 9015728 28 + TSS region transcription start site region 154950
Tssr154951 19 9017118 to 9017133 15 + TSS region transcription start site region 154951
Tssr154952 19 9017588 to 9017591 3 + TSS region transcription start site region 154952
Tssr154953 19 9017732 to 9017759 27 + TSS region transcription start site region 154953
Tssr154954 19 9018059 to 9018070 11 + TSS region transcription start site region 154954
Tssr154955 19 9018196 to 9018215 19 + TSS region transcription start site region 154955
Tssr154956 19 9018260 to 9018271 11 + TSS region transcription start site region 154956
Tssr154957 19 9018494 to 9018553 59 + TSS region transcription start site region 154957
Tssr154958 19 9018581 to 9018584 3 + TSS region transcription start site region 154958
Tssr154959 19 9018625 to 9018640 15 + TSS region transcription start site region 154959
Tssr154960 19 9023509 to 9023520 11 + TSS region transcription start site region 154960
Tssr154961 19 9060351 to 9060392 41 + TSS region transcription start site region 154961
Tssr154962 19 9075844 to 9075854 10 + TSS region transcription start site region 154962
Cpgi10591 19 9082584 to 9082804 220 CpG island CpG island 10591
Tssr154963 19 9083637 to 9083648 11 + TSS region transcription start site region 154963
Scgb1a1 19 9083642 to 9087956 4314 - protein coding gene secretoglobin, family 1A, member 1 (uteroglobin)
Tssr158088 19 9083667 to 9083702 35 - TSS region transcription start site region 158088
Tssr154964 19 9083699 to 9083704 5 + TSS region transcription start site region 154964
Tssr158089 19 9083714 to 9083723 9 - TSS region transcription start site region 158089
Tssr154965 19 9083714 to 9083721 7 + TSS region transcription start site region 154965
Tssr158090 19 9083726 to 9083743 17 - TSS region transcription start site region 158090
Tssr158091 19 9083745 to 9083750 5 - TSS region transcription start site region 158091
Tssr158092 19 9083751 to 9083776 25 - TSS region transcription start site region 158092
Tssr158093 19 9083791 to 9083800 9 - TSS region transcription start site region 158093
Tssr158094 19 9083803 to 9083813 10 - TSS region transcription start site region 158094
Tssr154966 19 9085183 to 9085204 21 + TSS region transcription start site region 154966
Tssr158095 19 9085220 to 9085339 119 - TSS region transcription start site region 158095
Tssr158096 19 9085341 to 9085350 9 - TSS region transcription start site region 158096
Tssr158097 19 9085355 to 9085408 53 - TSS region transcription start site region 158097
Tssr158098 19 9087945 to 9087962 17 - TSS region transcription start site region 158098
Gm41805 19 9099766 to 9102711 2945 + lncRNA gene predicted gene, 41805
Tssr154967 19 9102472 to 9102479 7 + TSS region transcription start site region 154967
Tssr154968 19 9102513 to 9102534 21 + TSS region transcription start site region 154968
Asrgl1 19 9111719 to 9135566 23847 - protein coding gene asparaginase like 1
Cpgi10592 19 9134684 to 9135797 1113 CpG island CpG island 10592
Tssr158099 19 9135036 to 9135051 15 - TSS region transcription start site region 158099
Tssr154969 19 9135154 to 9135160 6 + TSS region transcription start site region 154969
Tssr158100 19 9135556 to 9135602 46 - TSS region transcription start site region 158100
Tssr158101 19 9135603 to 9135635 32 - TSS region transcription start site region 158101
Tssr154970 19 9170728 to 9170729 1 + TSS region transcription start site region 154970
Gm38656 19 9185225 to 9187019 1794 - protein coding gene predicted gene, 38656
Gm6252 19 9216311 to 9216995 684 + unclassified gene predicted gene 6252
Tssr154971 19 9216338 to 9216345 7 + TSS region transcription start site region 154971
Gm24543 19 9234897 to 9234978 81 - miRNA gene predicted gene, 24543
Gm9750 19 9272142 to 9276614 4472 + lncRNA gene predicted gene 9750
Tssr154972 19 9283231 to 9283265 34 + TSS region transcription start site region 154972
Pcna-ps2 19 9283238 to 9284494 1256 + pseudogene proliferating cell nuclear antigen pseudogene 2
Tssr154973 19 9283563 to 9283607 44 + TSS region transcription start site region 154973
Gm2617 19 9323219 to 9339986 16767 - pseudogene predicted gene 2617