Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:8848563-9718607

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bscl2 19 8837467 to 8848683 11216 + protein coding gene Berardinelli-Seip congenital lipodystrophy 2 (seipin)
Lrrn4cl 19 8850785 to 8853909 3124 + protein coding gene LRRN4 C-terminal like
Tssr154862 19 8850939 to 8850954 15 + TSS region transcription start site region 154862
D19Mit125 19 8853007 to 8853116 109 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 125
Cpgi10580 19 8871385 to 8872126 741 CpG island CpG island 10580
Tssr154863 19 8871512 to 8871559 47 + TSS region transcription start site region 154863
Ubxn1 19 8871559 to 8875663 4104 + protein coding gene UBX domain protein 1
Tssr154864 19 8871560 to 8871598 38 + TSS region transcription start site region 154864
Tssr154865 19 8871605 to 8871616 11 + TSS region transcription start site region 154865
Tssr154866 19 8871617 to 8871628 11 + TSS region transcription start site region 154866
Tssr154867 19 8871636 to 8871686 50 + TSS region transcription start site region 154867
Tssr154868 19 8873559 to 8873584 25 + TSS region transcription start site region 154868
Uqcc3 19 8880016 to 8880933 917 - protein coding gene ubiquinol-cytochrome c reductase complex assembly factor 3
Cpgi10581 19 8880189 to 8880957 768 CpG island CpG island 10581
Tssr158075 19 8880832 to 8880854 22 - TSS region transcription start site region 158075
Tssr158076 19 8880883 to 8880928 45 - TSS region transcription start site region 158076
Tssr154869 19 8883848 to 8883861 13 + TSS region transcription start site region 154869
Tssr154870 19 8883865 to 8883909 44 + TSS region transcription start site region 154870
Lbhd1 19 8883878 to 8890759 6881 + protein coding gene LBH domain containing 1
Tssr154871 19 8883910 to 8883928 18 + TSS region transcription start site region 154871
Gm49403 19 8883930 to 8887258 3328 + protein coding gene predicted gene, 49403
5730408K05Rik 19 8888387 to 8888770 383 - lncRNA gene RIKEN cDNA 5730408K05 gene
Cpgi10582 19 8888388 to 8889343 955 CpG island CpG island 10582
Snora57 19 8888538 to 8888685 147 - snoRNA gene small nucleolar RNA, H/ACA box 57
Mir5136 19 8888699 to 8888774 75 - miRNA gene microRNA 5136
Tssr158077 19 8888769 to 8888770 1 - TSS region transcription start site region 158077
Tssr154872 19 8888880 to 8888925 45 + TSS region transcription start site region 154872
1810009A15Rik 19 8888883 to 8890759 1876 + protein coding gene RIKEN cDNA 1810009A15 gene
Gm49416 19 8888926 to 8895227 6301 + protein coding gene predicted gene, 49416
Tssr154873 19 8888946 to 8888953 7 + TSS region transcription start site region 154873
Cpgi10583 19 8892708 to 8893417 709 CpG island CpG island 10583
Ints5 19 8892987 to 8897890 4903 + protein coding gene integrator complex subunit 5
Tssr154874 19 8892998 to 8893052 54 + TSS region transcription start site region 154874
Cpgi10584 19 8897649 to 8898630 981 CpG island CpG island 10584
Ganab 19 8898090 to 8916663 18573 + protein coding gene alpha glucosidase 2 alpha neutral subunit
Tssr154875 19 8898095 to 8898122 27 + TSS region transcription start site region 154875
Tssr154876 19 8904986 to 8905015 29 + TSS region transcription start site region 154876
Tssr154877 19 8915756 to 8915783 27 + TSS region transcription start site region 154877
Gm36629 19 8918937 to 8921842 2905 - lncRNA gene predicted gene, 36629
Cpgi10585 19 8920085 to 8920941 856 CpG island CpG island 10585
Tssr154878 19 8920358 to 8920426 68 + TSS region transcription start site region 154878
B3gat3 19 8920393 to 8927236 6843 + protein coding gene beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)
Tssr154879 19 8920432 to 8920446 14 + TSS region transcription start site region 154879
Tssr154880 19 8920461 to 8920473 12 + TSS region transcription start site region 154880
Tssr154881 19 8920496 to 8920575 79 + TSS region transcription start site region 154881
Tssr158078 19 8921843 to 8921851 8 - TSS region transcription start site region 158078
Tssr154882 19 8922057 to 8922074 17 + TSS region transcription start site region 154882
Tssr154883 19 8922124 to 8922136 12 + TSS region transcription start site region 154883
Tssr154884 19 8926923 to 8926926 3 + TSS region transcription start site region 154884
Rom1 19 8927382 to 8929356 1974 - protein coding gene rod outer segment membrane protein 1
Cpgi10586 19 8928924 to 8930455 1531 CpG island CpG island 10586
Tssr158079 19 8929181 to 8929204 23 - TSS region transcription start site region 158079
Tssr158080 19 8929323 to 8929337 14 - TSS region transcription start site region 158080
Tssr154885 19 8929413 to 8929448 35 + TSS region transcription start site region 154885
Tssr154886 19 8929450 to 8929477 27 + TSS region transcription start site region 154886
Tssr154887 19 8929554 to 8929581 27 + TSS region transcription start site region 154887
Tssr154888 19 8929628 to 8929694 66 + TSS region transcription start site region 154888
Eml3 19 8929694 to 8941582 11888 + protein coding gene echinoderm microtubule associated protein like 3
Tssr154889 19 8929841 to 8929866 25 + TSS region transcription start site region 154889
Tssr154890 19 8932449 to 8932487 38 + TSS region transcription start site region 154890
Gm10353 19 8936975 to 8940864 3889 - antisense lncRNA gene predicted gene 10353
Tssr154891 19 8939556 to 8939559 3 + TSS region transcription start site region 154891
Cpgi10587 19 8941592 to 8942754 1162 CpG island CpG island 10587
Tssr154892 19 8941845 to 8941852 7 + TSS region transcription start site region 154892
Tssr154893 19 8941865 to 8942050 185 + TSS region transcription start site region 154893
Mta2 19 8941920 to 8952300 10380 + protein coding gene metastasis-associated gene family, member 2
Tssr154894 19 8942161 to 8942172 11 + TSS region transcription start site region 154894
Tssr154895 19 8942239 to 8942250 11 + TSS region transcription start site region 154895
Tssr158081 19 8942366 to 8942411 45 - TSS region transcription start site region 158081
Tssr154896 19 8942485 to 8942514 29 + TSS region transcription start site region 154896
Tssr154897 19 8942521 to 8942542 21 + TSS region transcription start site region 154897
Tssr154898 19 8943117 to 8943120 3 + TSS region transcription start site region 154898
Tssr154899 19 8943559 to 8943564 5 + TSS region transcription start site region 154899
Tssr154900 19 8952070 to 8952085 15 + TSS region transcription start site region 154900
Cpgi10588 19 8953460 to 8954102 642 CpG island CpG island 10588
Tssr154901 19 8953826 to 8953856 30 + TSS region transcription start site region 154901
Tut1 19 8953850 to 8966207 12357 + protein coding gene terminal uridylyl transferase 1, U6 snRNA-specific
Tssr154902 19 8953861 to 8953884 23 + TSS region transcription start site region 154902
Tssr154903 19 8953886 to 8953938 52 + TSS region transcription start site region 154903
Tssr154904 19 8953977 to 8953991 14 + TSS region transcription start site region 154904
Cpgi10589 19 8966613 to 8967437 824 CpG island CpG island 10589
Tssr154905 19 8966721 to 8966735 14 + TSS region transcription start site region 154905
Tssr154906 19 8966999 to 8967019 20 + TSS region transcription start site region 154906
Tssr154907 19 8967031 to 8967050 19 + TSS region transcription start site region 154907
Eef1g 19 8967041 to 8978180 11139 + protein coding gene eukaryotic translation elongation factor 1 gamma
Tssr154908 19 8967064 to 8967077 13 + TSS region transcription start site region 154908
Tssr154909 19 8967079 to 8967102 23 + TSS region transcription start site region 154909
Tssr154910 19 8967109 to 8967171 62 + TSS region transcription start site region 154910
Tssr154911 19 8967175 to 8967208 33 + TSS region transcription start site region 154911
Tssr154912 19 8970560 to 8970565 5 + TSS region transcription start site region 154912
Tssr158082 19 8984425 to 8984437 12 - TSS region transcription start site region 158082
Tssr154913 19 8984836 to 8984882 46 + TSS region transcription start site region 154913
Cpgi10590 19 8988873 to 8990000 1127 CpG island CpG island 10590
Tssr154914 19 8989021 to 8989064 43 + TSS region transcription start site region 154914
Tssr154915 19 8989277 to 8989295 18 + TSS region transcription start site region 154915
Ahnak 19 8989284 to 9076919 87635 + protein coding gene AHNAK nucleoprotein (desmoyokin)
Tssr154916 19 8989327 to 8989338 11 + TSS region transcription start site region 154916
Tssr154917 19 8990238 to 8990261 23 + TSS region transcription start site region 154917
Tssr154918 19 8990268 to 8990313 45 + TSS region transcription start site region 154918
Tssr154919 19 8990600 to 8990616 16 + TSS region transcription start site region 154919
Tssr154920 19 8990644 to 8990658 14 + TSS region transcription start site region 154920
Tssr154921 19 8993348 to 8993368 20 + TSS region transcription start site region 154921
Tssr154922 19 8997885 to 8997905 20 + TSS region transcription start site region 154922
Tssr158083 19 8999691 to 8999737 46 - TSS region transcription start site region 158083
Tssr158084 19 9000122 to 9000148 26 - TSS region transcription start site region 158084
Tssr154923 19 9000685 to 9000699 14 + TSS region transcription start site region 154923
Tssr154924 19 9001775 to 9001806 31 + TSS region transcription start site region 154924
Tssr158085 19 9001780 to 9001802 22 - TSS region transcription start site region 158085
Tssr154925 19 9002405 to 9002417 12 + TSS region transcription start site region 154925
Tssr154926 19 9002463 to 9002509 46 + TSS region transcription start site region 154926
Tssr154927 19 9002644 to 9002657 13 + TSS region transcription start site region 154927
Tssr154928 19 9002708 to 9002732 24 + TSS region transcription start site region 154928
Tssr154929 19 9002760 to 9002791 31 + TSS region transcription start site region 154929
Tssr154930 19 9002801 to 9002837 36 + TSS region transcription start site region 154930
Tssr158086 19 9002947 to 9002967 20 - TSS region transcription start site region 158086
Tssr154931 19 9003061 to 9003101 40 + TSS region transcription start site region 154931
Tssr154932 19 9003125 to 9003136 11 + TSS region transcription start site region 154932
Tssr158087 19 9003496 to 9003539 43 - TSS region transcription start site region 158087
Tssr154933 19 9003754 to 9003766 12 + TSS region transcription start site region 154933
Tssr154934 19 9003814 to 9003829 15 + TSS region transcription start site region 154934
Tssr154935 19 9003873 to 9003884 11 + TSS region transcription start site region 154935
Tssr154936 19 9004039 to 9004052 13 + TSS region transcription start site region 154936
Tssr154937 19 9004135 to 9004150 15 + TSS region transcription start site region 154937
Tssr154938 19 9004419 to 9004446 27 + TSS region transcription start site region 154938
Tssr154939 19 9005704 to 9005708 4 + TSS region transcription start site region 154939
Tssr154940 19 9005902 to 9005935 33 + TSS region transcription start site region 154940
Tssr154941 19 9005936 to 9005993 57 + TSS region transcription start site region 154941
Tssr154942 19 9006459 to 9006471 12 + TSS region transcription start site region 154942
Tssr154943 19 9006923 to 9006942 19 + TSS region transcription start site region 154943
Tssr154944 19 9010615 to 9010635 20 + TSS region transcription start site region 154944
Tssr154945 19 9010811 to 9010838 27 + TSS region transcription start site region 154945
Tssr154946 19 9013412 to 9013433 21 + TSS region transcription start site region 154946
Tssr154947 19 9015385 to 9015431 46 + TSS region transcription start site region 154947
Tssr154948 19 9015436 to 9015453 17 + TSS region transcription start site region 154948
Tssr154949 19 9015496 to 9015545 49 + TSS region transcription start site region 154949
Tssr154950 19 9015700 to 9015728 28 + TSS region transcription start site region 154950
Tssr154951 19 9017118 to 9017133 15 + TSS region transcription start site region 154951
Tssr154952 19 9017588 to 9017591 3 + TSS region transcription start site region 154952
Tssr154953 19 9017732 to 9017759 27 + TSS region transcription start site region 154953
Tssr154954 19 9018059 to 9018070 11 + TSS region transcription start site region 154954
Tssr154955 19 9018196 to 9018215 19 + TSS region transcription start site region 154955
Tssr154956 19 9018260 to 9018271 11 + TSS region transcription start site region 154956
Tssr154957 19 9018494 to 9018553 59 + TSS region transcription start site region 154957
Tssr154958 19 9018581 to 9018584 3 + TSS region transcription start site region 154958
Tssr154959 19 9018625 to 9018640 15 + TSS region transcription start site region 154959
Tssr154960 19 9023509 to 9023520 11 + TSS region transcription start site region 154960
Tssr154961 19 9060351 to 9060392 41 + TSS region transcription start site region 154961
Tssr154962 19 9075844 to 9075854 10 + TSS region transcription start site region 154962
Cpgi10591 19 9082584 to 9082804 220 CpG island CpG island 10591
Tssr154963 19 9083637 to 9083648 11 + TSS region transcription start site region 154963
Scgb1a1 19 9083642 to 9087956 4314 - protein coding gene secretoglobin, family 1A, member 1 (uteroglobin)
Tssr158088 19 9083667 to 9083702 35 - TSS region transcription start site region 158088
Tssr154964 19 9083699 to 9083704 5 + TSS region transcription start site region 154964
Tssr158089 19 9083714 to 9083723 9 - TSS region transcription start site region 158089
Tssr154965 19 9083714 to 9083721 7 + TSS region transcription start site region 154965
Tssr158090 19 9083726 to 9083743 17 - TSS region transcription start site region 158090
Tssr158091 19 9083745 to 9083750 5 - TSS region transcription start site region 158091
Tssr158092 19 9083751 to 9083776 25 - TSS region transcription start site region 158092
Tssr158093 19 9083791 to 9083800 9 - TSS region transcription start site region 158093
Tssr158094 19 9083803 to 9083813 10 - TSS region transcription start site region 158094
Tssr154966 19 9085183 to 9085204 21 + TSS region transcription start site region 154966
Tssr158095 19 9085220 to 9085339 119 - TSS region transcription start site region 158095
Tssr158096 19 9085341 to 9085350 9 - TSS region transcription start site region 158096
Tssr158097 19 9085355 to 9085408 53 - TSS region transcription start site region 158097
Tssr158098 19 9087945 to 9087962 17 - TSS region transcription start site region 158098
Gm41805 19 9099766 to 9102711 2945 + lncRNA gene predicted gene, 41805
Tssr154967 19 9102472 to 9102479 7 + TSS region transcription start site region 154967
Tssr154968 19 9102513 to 9102534 21 + TSS region transcription start site region 154968
Asrgl1 19 9111719 to 9135566 23847 - protein coding gene asparaginase like 1
Cpgi10592 19 9134684 to 9135797 1113 CpG island CpG island 10592
Tssr158099 19 9135036 to 9135051 15 - TSS region transcription start site region 158099
Tssr154969 19 9135154 to 9135160 6 + TSS region transcription start site region 154969
Tssr158100 19 9135556 to 9135602 46 - TSS region transcription start site region 158100
Tssr158101 19 9135603 to 9135635 32 - TSS region transcription start site region 158101
Tssr154970 19 9170728 to 9170729 1 + TSS region transcription start site region 154970
Gm38656 19 9185225 to 9187019 1794 - protein coding gene predicted gene, 38656
Gm6252 19 9216311 to 9216995 684 + unclassified gene predicted gene 6252
Tssr154971 19 9216338 to 9216345 7 + TSS region transcription start site region 154971
Gm24543 19 9234897 to 9234978 81 - miRNA gene predicted gene, 24543
Gm9750 19 9272142 to 9276614 4472 + lncRNA gene predicted gene 9750
Tssr154972 19 9283231 to 9283265 34 + TSS region transcription start site region 154972
Pcna-ps2 19 9283238 to 9284494 1256 + pseudogene proliferating cell nuclear antigen pseudogene 2
Tssr154973 19 9283563 to 9283607 44 + TSS region transcription start site region 154973
Gm2617 19 9323219 to 9339986 16767 - pseudogene predicted gene 2617
Stxbp3-ps 19 9557792 to 9559183 1391 - pseudogene syntaxin-binding protein 3, pseudogene
Tssr158102 19 9559204 to 9559248 44 - TSS region transcription start site region 158102
Gm29231 19 9605121 to 9614034 8913 + pseudogene predicted gene 29231
Tssr154974 19 9606814 to 9606836 22 + TSS region transcription start site region 154974
Gm6445 19 9607104 to 9608376 1272 + pseudogene predicted gene 6445