Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:8838946-8938953

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gng3 19 8836929 to 8839246 2317 - protein coding gene guanine nucleotide binding protein (G protein), gamma 3
Bscl2 19 8837467 to 8848683 11216 + protein coding gene Berardinelli-Seip congenital lipodystrophy 2 (seipin)
Tssr5435 19 8839016 to 8839054 38 - TSS region transcription start site region 5435
Tssr5436 19 8839128 to 8839143 15 - TSS region transcription start site region 5436
Tssr158073 19 8839150 to 8839161 11 - TSS region transcription start site region 158073
Tssr158074 19 8839181 to 8839265 84 - TSS region transcription start site region 158074
Tssr154848 19 8839275 to 8839286 11 + TSS region transcription start site region 154848
Tssr5437 19 8839277 to 8839294 17 - TSS region transcription start site region 5437
Tssr154849 19 8839298 to 8839346 48 + TSS region transcription start site region 154849
Tssr5438 19 8839328 to 8839334 6 - TSS region transcription start site region 5438
Tssr154850 19 8839352 to 8839375 23 + TSS region transcription start site region 154850
Tssr154851 19 8839386 to 8839400 14 + TSS region transcription start site region 154851
Tssr5439 19 8839453 to 8839458 5 - TSS region transcription start site region 5439
Tssr154852 19 8839458 to 8839470 12 + TSS region transcription start site region 154852
Tssr154853 19 8839471 to 8839493 22 + TSS region transcription start site region 154853
Tssr154854 19 8839508 to 8839558 50 + TSS region transcription start site region 154854
Tssr154855 19 8839559 to 8839580 21 + TSS region transcription start site region 154855
Tssr154856 19 8839586 to 8839597 11 + TSS region transcription start site region 154856
Cpgi10579 19 8840470 to 8840759 289 CpG island CpG island 10579
Tssr154857 19 8840519 to 8840549 30 + TSS region transcription start site region 154857
Tssr154858 19 8840565 to 8840577 12 + TSS region transcription start site region 154858
Tssr154859 19 8841180 to 8841197 17 + TSS region transcription start site region 154859
Tssr154860 19 8841205 to 8841239 34 + TSS region transcription start site region 154860
Tssr154861 19 8842985 to 8843035 50 + TSS region transcription start site region 154861
Lrrn4cl 19 8850785 to 8853909 3124 + protein coding gene LRRN4 C-terminal like
Tssr154862 19 8850939 to 8850954 15 + TSS region transcription start site region 154862
D19Mit125 19 8853007 to 8853116 109 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 125
Cpgi10580 19 8871385 to 8872126 741 CpG island CpG island 10580
Tssr154863 19 8871512 to 8871559 47 + TSS region transcription start site region 154863
Ubxn1 19 8871559 to 8875663 4104 + protein coding gene UBX domain protein 1
Tssr154864 19 8871560 to 8871598 38 + TSS region transcription start site region 154864
Tssr154865 19 8871605 to 8871616 11 + TSS region transcription start site region 154865
Tssr154866 19 8871617 to 8871628 11 + TSS region transcription start site region 154866
Tssr154867 19 8871636 to 8871686 50 + TSS region transcription start site region 154867
Tssr154868 19 8873559 to 8873584 25 + TSS region transcription start site region 154868
Uqcc3 19 8880016 to 8880933 917 - protein coding gene ubiquinol-cytochrome c reductase complex assembly factor 3
Cpgi10581 19 8880189 to 8880957 768 CpG island CpG island 10581
Tssr158075 19 8880832 to 8880854 22 - TSS region transcription start site region 158075
Tssr158076 19 8880883 to 8880928 45 - TSS region transcription start site region 158076
Tssr154869 19 8883848 to 8883861 13 + TSS region transcription start site region 154869
Tssr154870 19 8883865 to 8883909 44 + TSS region transcription start site region 154870
Lbhd1 19 8883878 to 8890759 6881 + protein coding gene LBH domain containing 1
Tssr154871 19 8883910 to 8883928 18 + TSS region transcription start site region 154871
Gm49403 19 8883930 to 8887258 3328 + protein coding gene predicted gene, 49403
5730408K05Rik 19 8888387 to 8888770 383 - lncRNA gene RIKEN cDNA 5730408K05 gene
Cpgi10582 19 8888388 to 8889343 955 CpG island CpG island 10582
Snora57 19 8888538 to 8888685 147 - snoRNA gene small nucleolar RNA, H/ACA box 57
Mir5136 19 8888699 to 8888774 75 - miRNA gene microRNA 5136
Tssr158077 19 8888769 to 8888770 1 - TSS region transcription start site region 158077
Tssr154872 19 8888880 to 8888925 45 + TSS region transcription start site region 154872
1810009A15Rik 19 8888883 to 8890759 1876 + protein coding gene RIKEN cDNA 1810009A15 gene
Gm49416 19 8888926 to 8895227 6301 + protein coding gene predicted gene, 49416
Tssr154873 19 8888946 to 8888953 7 + TSS region transcription start site region 154873
Cpgi10583 19 8892708 to 8893417 709 CpG island CpG island 10583
Ints5 19 8892987 to 8897890 4903 + protein coding gene integrator complex subunit 5
Tssr154874 19 8892998 to 8893052 54 + TSS region transcription start site region 154874
Cpgi10584 19 8897649 to 8898630 981 CpG island CpG island 10584
Ganab 19 8898090 to 8916663 18573 + protein coding gene alpha glucosidase 2 alpha neutral subunit
Tssr154875 19 8898095 to 8898122 27 + TSS region transcription start site region 154875
Tssr154876 19 8904986 to 8905015 29 + TSS region transcription start site region 154876
Tssr154877 19 8915756 to 8915783 27 + TSS region transcription start site region 154877
Gm36629 19 8918937 to 8921842 2905 - lncRNA gene predicted gene, 36629
Cpgi10585 19 8920085 to 8920941 856 CpG island CpG island 10585
Tssr154878 19 8920358 to 8920426 68 + TSS region transcription start site region 154878
B3gat3 19 8920393 to 8927236 6843 + protein coding gene beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)
Tssr154879 19 8920432 to 8920446 14 + TSS region transcription start site region 154879
Tssr154880 19 8920461 to 8920473 12 + TSS region transcription start site region 154880
Tssr154881 19 8920496 to 8920575 79 + TSS region transcription start site region 154881
Tssr158078 19 8921843 to 8921851 8 - TSS region transcription start site region 158078
Tssr154882 19 8922057 to 8922074 17 + TSS region transcription start site region 154882
Tssr154883 19 8922124 to 8922136 12 + TSS region transcription start site region 154883
Tssr154884 19 8926923 to 8926926 3 + TSS region transcription start site region 154884
Rom1 19 8927382 to 8929356 1974 - protein coding gene rod outer segment membrane protein 1
Cpgi10586 19 8928924 to 8930455 1531 CpG island CpG island 10586
Tssr158079 19 8929181 to 8929204 23 - TSS region transcription start site region 158079
Tssr158080 19 8929323 to 8929337 14 - TSS region transcription start site region 158080
Tssr154885 19 8929413 to 8929448 35 + TSS region transcription start site region 154885
Tssr154886 19 8929450 to 8929477 27 + TSS region transcription start site region 154886
Tssr154887 19 8929554 to 8929581 27 + TSS region transcription start site region 154887
Tssr154888 19 8929628 to 8929694 66 + TSS region transcription start site region 154888
Eml3 19 8929694 to 8941582 11888 + protein coding gene echinoderm microtubule associated protein like 3
Tssr154889 19 8929841 to 8929866 25 + TSS region transcription start site region 154889
Tssr154890 19 8932449 to 8932487 38 + TSS region transcription start site region 154890
Gm10353 19 8936975 to 8940864 3889 - antisense lncRNA gene predicted gene 10353