Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:8750989-8821527

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stx5a 19 8741424 to 8755642 14218 + protein coding gene syntaxin 5A
1700023D09Rik 19 8754789 to 8756969 2180 - lncRNA gene RIKEN cDNA 1700023D09 gene
Cpgi10571 19 8756683 to 8757585 902 CpG island CpG island 10571
Tssr154814 19 8756723 to 8756744 21 + TSS region transcription start site region 154814
Tssr158049 19 8756898 to 8756913 15 - TSS region transcription start site region 158049
Tssr154815 19 8757079 to 8757093 14 + TSS region transcription start site region 154815
Tssr154816 19 8757099 to 8757126 27 + TSS region transcription start site region 154816
Nxf1 19 8757103 to 8770910 13807 + protein coding gene nuclear RNA export factor 1
Tssr154817 19 8757139 to 8757155 16 + TSS region transcription start site region 154817
Tssr154818 19 8757414 to 8757447 33 + TSS region transcription start site region 154818
Tssr154819 19 8765030 to 8765034 4 + TSS region transcription start site region 154819
Tssr154820 19 8766714 to 8766727 13 + TSS region transcription start site region 154820
Cpgi10572 19 8770849 to 8771449 600 CpG island CpG island 10572
Tssr154821 19 8770983 to 8771019 36 + TSS region transcription start site region 154821
Tmem223 19 8770996 to 8772475 1479 + protein coding gene transmembrane protein 223
Tssr154822 19 8771037 to 8771055 18 + TSS region transcription start site region 154822
Tssr154823 19 8771058 to 8771069 11 + TSS region transcription start site region 154823
Tmem179b 19 8772522 to 8774467 1945 - protein coding gene transmembrane protein 179B
Tssr158050 19 8773567 to 8773595 28 - TSS region transcription start site region 158050
Cpgi10573 19 8774233 to 8775322 1089 CpG island CpG island 10573
Taf6l 19 8774354 to 8786417 12063 - protein coding gene TATA-box binding protein associated factor 6 like
Tssr158051 19 8774431 to 8774470 39 - TSS region transcription start site region 158051
Tssr154824 19 8774484 to 8774496 12 + TSS region transcription start site region 154824
Gm2518 19 8774485 to 8776962 2477 + pseudogene predicted gene 2518
Cpgi10574 19 8785989 to 8786527 538 CpG island CpG island 10574
Tssr158052 19 8786245 to 8786270 25 - TSS region transcription start site region 158052
Tssr158053 19 8786272 to 8786297 25 - TSS region transcription start site region 158053
Tssr158054 19 8786408 to 8786422 14 - TSS region transcription start site region 158054
Tssr158055 19 8786431 to 8786440 9 - TSS region transcription start site region 158055
Polr2g 19 8793129 to 8798557 5428 - protein coding gene polymerase (RNA) II (DNA directed) polypeptide G
Cpgi10575 19 8798170 to 8798657 487 CpG island CpG island 10575
Tssr158056 19 8798385 to 8798395 10 - TSS region transcription start site region 158056
Tssr158057 19 8798404 to 8798418 14 - TSS region transcription start site region 158057
Tssr158058 19 8798421 to 8798432 11 - TSS region transcription start site region 158058
Tssr158059 19 8798465 to 8798470 5 - TSS region transcription start site region 158059
Tssr158060 19 8798495 to 8798565 70 - TSS region transcription start site region 158060
Tssr158061 19 8798571 to 8798593 22 - TSS region transcription start site region 158061
Cpgi10576 19 8802209 to 8802764 555 CpG island CpG island 10576
Tssr154825 19 8802486 to 8802521 35 + TSS region transcription start site region 154825
Zbtb3 19 8802530 to 8804854 2324 + protein coding gene zinc finger and BTB domain containing 3
Tssr154826 19 8802539 to 8802558 19 + TSS region transcription start site region 154826
Tssr154827 19 8802779 to 8802791 12 + TSS region transcription start site region 154827
Tssr154828 19 8802841 to 8802850 9 + TSS region transcription start site region 154828
Ttc9c 19 8809075 to 8819333 10258 - protein coding gene tetratricopeptide repeat domain 9C
Tssr158062 19 8809371 to 8809389 18 - TSS region transcription start site region 158062
Tssr158063 19 8818671 to 8818712 41 - TSS region transcription start site region 158063
Tssr158064 19 8818946 to 8819008 62 - TSS region transcription start site region 158064
Tssr158065 19 8819184 to 8819191 7 - TSS region transcription start site region 158065
Cpgi10577 19 8819217 to 8821069 1852 CpG island CpG island 10577
Tssr158066 19 8819236 to 8819251 15 - TSS region transcription start site region 158066
Tssr158067 19 8819278 to 8819301 23 - TSS region transcription start site region 158067
Tssr158068 19 8819314 to 8819350 36 - TSS region transcription start site region 158068
Hnrnpul2 19 8819401 to 8834142 14741 + protein coding gene heterogeneous nuclear ribonucleoprotein U-like 2
Tssr154829 19 8819560 to 8819574 14 + TSS region transcription start site region 154829
Tssr154830 19 8819582 to 8819608 26 + TSS region transcription start site region 154830
Tssr158069 19 8819757 to 8819790 33 - TSS region transcription start site region 158069
Tssr154831 19 8819966 to 8820034 68 + TSS region transcription start site region 154831
Tssr154832 19 8820049 to 8820060 11 + TSS region transcription start site region 154832
Tssr154833 19 8820065 to 8820076 11 + TSS region transcription start site region 154833
Tssr154834 19 8820128 to 8820139 11 + TSS region transcription start site region 154834
Tssr154835 19 8820216 to 8820249 33 + TSS region transcription start site region 154835
Tssr154836 19 8820253 to 8820314 61 + TSS region transcription start site region 154836
Tssr154837 19 8820670 to 8820681 11 + TSS region transcription start site region 154837
Tssr154838 19 8820693 to 8820704 11 + TSS region transcription start site region 154838
Tssr158070 19 8821310 to 8821331 21 - TSS region transcription start site region 158070