Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:8671424-8825642

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Chrm1 19 8664005 to 8683606 19601 + protein coding gene cholinergic receptor, muscarinic 1, CNS
Gm22820 19 8681835 to 8682163 328 - unclassified non-coding RNA gene predicted gene, 22820
Tssr154797 19 8702825 to 8702839 14 + TSS region transcription start site region 154797
Slc3a2 19 8706882 to 8723369 16487 - protein coding gene solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
Tssr158019 19 8707793 to 8707806 13 - TSS region transcription start site region 158019
Tssr158020 19 8707841 to 8707852 11 - TSS region transcription start site region 158020
Tssr158021 19 8707860 to 8707872 12 - TSS region transcription start site region 158021
Tssr158022 19 8707879 to 8707897 18 - TSS region transcription start site region 158022
Tssr158023 19 8708018 to 8708038 20 - TSS region transcription start site region 158023
Tssr158024 19 8708044 to 8708055 11 - TSS region transcription start site region 158024
Tssr158025 19 8708299 to 8708303 4 - TSS region transcription start site region 158025
Tssr158026 19 8709068 to 8709128 60 - TSS region transcription start site region 158026
Tssr158027 19 8709256 to 8709267 11 - TSS region transcription start site region 158027
Tssr158028 19 8709381 to 8709417 36 - TSS region transcription start site region 158028
Tssr158029 19 8709577 to 8709627 50 - TSS region transcription start site region 158029
Tssr158030 19 8709740 to 8709785 45 - TSS region transcription start site region 158030
Tssr158031 19 8711866 to 8711892 26 - TSS region transcription start site region 158031
Tssr158032 19 8712035 to 8712040 5 - TSS region transcription start site region 158032
Tssr154798 19 8712221 to 8712234 13 + TSS region transcription start site region 154798
Tssr158033 19 8712888 to 8712952 64 - TSS region transcription start site region 158033
Tssr158034 19 8712967 to 8713023 56 - TSS region transcription start site region 158034
Cpgi10567 19 8713251 to 8714005 754 CpG island CpG island 10567
Tssr158035 19 8713362 to 8713404 42 - TSS region transcription start site region 158035
Tssr158036 19 8713862 to 8713881 19 - TSS region transcription start site region 158036
Tssr158037 19 8713886 to 8713893 7 - TSS region transcription start site region 158037
Tssr158038 19 8714200 to 8714207 7 - TSS region transcription start site region 158038
Tssr158039 19 8714304 to 8714316 12 - TSS region transcription start site region 158039
Tssr158040 19 8714326 to 8714336 10 - TSS region transcription start site region 158040
Tssr158041 19 8714363 to 8714364 1 - TSS region transcription start site region 158041
Tssr158042 19 8714394 to 8714414 20 - TSS region transcription start site region 158042
Tssr158043 19 8714440 to 8714450 10 - TSS region transcription start site region 158043
Tssr158044 19 8716005 to 8716021 16 - TSS region transcription start site region 158044
Cpgi10568 19 8722853 to 8723729 876 CpG island CpG island 10568
Tssr154799 19 8722944 to 8722962 18 + TSS region transcription start site region 154799
Tssr5432 19 8722972 to 8722986 14 + TSS region transcription start site region 5432
Tssr158045 19 8723125 to 8723135 10 - TSS region transcription start site region 158045
Tssr158046 19 8723166 to 8723287 121 - TSS region transcription start site region 158046
Tssr158047 19 8723356 to 8723378 22 - TSS region transcription start site region 158047
Tssr154800 19 8723478 to 8723514 36 + TSS region transcription start site region 154800
Snhg1 19 8723487 to 8726326 2839 + lncRNA gene small nucleolar RNA host gene 1
Gm25855 19 8723993 to 8724064 71 + snoRNA gene predicted gene, 25855
Tssr154801 19 8723993 to 8723997 4 + TSS region transcription start site region 154801
Tssr154802 19 8724113 to 8724143 30 + TSS region transcription start site region 154802
Gm25894 19 8724251 to 8724325 74 + snoRNA gene predicted gene, 25894
Tssr5433 19 8724383 to 8724412 29 + TSS region transcription start site region 5433
Gm24452 19 8724531 to 8724602 71 + snoRNA gene predicted gene, 24452
Gm24453 19 8724868 to 8724943 75 + snoRNA gene predicted gene, 24453
Gm22744 19 8725092 to 8725156 64 + snoRNA gene predicted gene, 22744
Tssr154803 19 8725094 to 8725097 3 + TSS region transcription start site region 154803
Gm22680 19 8725341 to 8725409 68 + snoRNA gene predicted gene, 22680
Gm23246 19 8725594 to 8725660 66 + snoRNA gene predicted gene, 23246
Tssr154804 19 8725860 to 8725874 14 + TSS region transcription start site region 154804
Snord22 19 8725866 to 8725991 125 + snoRNA gene small nucleolar RNA, C/D box 22
Cpgi10569 19 8735664 to 8736291 627 CpG island CpG island 10569
Tssr154805 19 8735792 to 8735807 15 + TSS region transcription start site region 154805
Tssr154806 19 8735808 to 8735864 56 + TSS region transcription start site region 154806
Wdr74 19 8735827 to 8740624 4797 + protein coding gene WD repeat domain 74
Gm45736 19 8735841 to 8741223 5382 + protein coding gene predicted gene 45736
Tssr158048 19 8740571 to 8740579 8 - TSS region transcription start site region 158048
Tssr154807 19 8740702 to 8740707 5 + TSS region transcription start site region 154807
Tssr154808 19 8740712 to 8740723 11 + TSS region transcription start site region 154808
1700092M07Rik 19 8740718 to 8741225 507 + protein coding gene RIKEN cDNA 1700092M07 gene
Tssr154809 19 8740739 to 8740767 28 + TSS region transcription start site region 154809
Cpgi10570 19 8741032 to 8742437 1405 CpG island CpG island 10570
Tssr154810 19 8741415 to 8741461 46 + TSS region transcription start site region 154810
Stx5a 19 8741424 to 8755642 14218 + protein coding gene syntaxin 5A
Tssr154811 19 8741473 to 8741503 30 + TSS region transcription start site region 154811
Tssr154812 19 8741794 to 8741811 17 + TSS region transcription start site region 154812
Tssr154813 19 8741815 to 8741865 50 + TSS region transcription start site region 154813
Mir6992 19 8742971 to 8743079 108 + miRNA gene microRNA 6992
1700023D09Rik 19 8754789 to 8756969 2180 - lncRNA gene RIKEN cDNA 1700023D09 gene
Cpgi10571 19 8756683 to 8757585 902 CpG island CpG island 10571
Tssr154814 19 8756723 to 8756744 21 + TSS region transcription start site region 154814
Tssr158049 19 8756898 to 8756913 15 - TSS region transcription start site region 158049
Tssr154815 19 8757079 to 8757093 14 + TSS region transcription start site region 154815
Tssr154816 19 8757099 to 8757126 27 + TSS region transcription start site region 154816
Nxf1 19 8757103 to 8770910 13807 + protein coding gene nuclear RNA export factor 1
Tssr154817 19 8757139 to 8757155 16 + TSS region transcription start site region 154817
Tssr154818 19 8757414 to 8757447 33 + TSS region transcription start site region 154818
Tssr154819 19 8765030 to 8765034 4 + TSS region transcription start site region 154819
Tssr154820 19 8766714 to 8766727 13 + TSS region transcription start site region 154820
Cpgi10572 19 8770849 to 8771449 600 CpG island CpG island 10572
Tssr154821 19 8770983 to 8771019 36 + TSS region transcription start site region 154821
Tmem223 19 8770996 to 8772475 1479 + protein coding gene transmembrane protein 223
Tssr154822 19 8771037 to 8771055 18 + TSS region transcription start site region 154822
Tssr154823 19 8771058 to 8771069 11 + TSS region transcription start site region 154823
Tmem179b 19 8772522 to 8774467 1945 - protein coding gene transmembrane protein 179B
Tssr158050 19 8773567 to 8773595 28 - TSS region transcription start site region 158050
Cpgi10573 19 8774233 to 8775322 1089 CpG island CpG island 10573
Taf6l 19 8774354 to 8786417 12063 - protein coding gene TATA-box binding protein associated factor 6 like
Tssr158051 19 8774431 to 8774470 39 - TSS region transcription start site region 158051
Tssr154824 19 8774484 to 8774496 12 + TSS region transcription start site region 154824
Gm2518 19 8774485 to 8776962 2477 + pseudogene predicted gene 2518
Cpgi10574 19 8785989 to 8786527 538 CpG island CpG island 10574
Tssr158052 19 8786245 to 8786270 25 - TSS region transcription start site region 158052
Tssr158053 19 8786272 to 8786297 25 - TSS region transcription start site region 158053
Tssr158054 19 8786408 to 8786422 14 - TSS region transcription start site region 158054
Tssr158055 19 8786431 to 8786440 9 - TSS region transcription start site region 158055
Polr2g 19 8793129 to 8798557 5428 - protein coding gene polymerase (RNA) II (DNA directed) polypeptide G
Cpgi10575 19 8798170 to 8798657 487 CpG island CpG island 10575
Tssr158056 19 8798385 to 8798395 10 - TSS region transcription start site region 158056
Tssr158057 19 8798404 to 8798418 14 - TSS region transcription start site region 158057
Tssr158058 19 8798421 to 8798432 11 - TSS region transcription start site region 158058
Tssr158059 19 8798465 to 8798470 5 - TSS region transcription start site region 158059
Tssr158060 19 8798495 to 8798565 70 - TSS region transcription start site region 158060
Tssr158061 19 8798571 to 8798593 22 - TSS region transcription start site region 158061
Cpgi10576 19 8802209 to 8802764 555 CpG island CpG island 10576
Tssr154825 19 8802486 to 8802521 35 + TSS region transcription start site region 154825
Zbtb3 19 8802530 to 8804854 2324 + protein coding gene zinc finger and BTB domain containing 3
Tssr154826 19 8802539 to 8802558 19 + TSS region transcription start site region 154826
Tssr154827 19 8802779 to 8802791 12 + TSS region transcription start site region 154827
Tssr154828 19 8802841 to 8802850 9 + TSS region transcription start site region 154828
Ttc9c 19 8809075 to 8819333 10258 - protein coding gene tetratricopeptide repeat domain 9C
Tssr158062 19 8809371 to 8809389 18 - TSS region transcription start site region 158062
Tssr158063 19 8818671 to 8818712 41 - TSS region transcription start site region 158063
Tssr158064 19 8818946 to 8819008 62 - TSS region transcription start site region 158064
Tssr158065 19 8819184 to 8819191 7 - TSS region transcription start site region 158065
Cpgi10577 19 8819217 to 8821069 1852 CpG island CpG island 10577
Tssr158066 19 8819236 to 8819251 15 - TSS region transcription start site region 158066
Tssr158067 19 8819278 to 8819301 23 - TSS region transcription start site region 158067
Tssr158068 19 8819314 to 8819350 36 - TSS region transcription start site region 158068
Hnrnpul2 19 8819401 to 8834142 14741 + protein coding gene heterogeneous nuclear ribonucleoprotein U-like 2
Tssr154829 19 8819560 to 8819574 14 + TSS region transcription start site region 154829
Tssr154830 19 8819582 to 8819608 26 + TSS region transcription start site region 154830
Tssr158069 19 8819757 to 8819790 33 - TSS region transcription start site region 158069
Tssr154831 19 8819966 to 8820034 68 + TSS region transcription start site region 154831
Tssr154832 19 8820049 to 8820060 11 + TSS region transcription start site region 154832
Tssr154833 19 8820065 to 8820076 11 + TSS region transcription start site region 154833
Tssr154834 19 8820128 to 8820139 11 + TSS region transcription start site region 154834
Tssr154835 19 8820216 to 8820249 33 + TSS region transcription start site region 154835
Tssr154836 19 8820253 to 8820314 61 + TSS region transcription start site region 154836
Tssr154837 19 8820670 to 8820681 11 + TSS region transcription start site region 154837
Tssr154838 19 8820693 to 8820704 11 + TSS region transcription start site region 154838
Tssr158070 19 8821310 to 8821331 21 - TSS region transcription start site region 158070
Tssr154839 19 8822855 to 8822870 15 + TSS region transcription start site region 154839