Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:7501312-9039649

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416 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atl3 19 7494040 to 7538608 44568 + protein coding gene atlastin GTPase 3
Tssr154761 19 7536859 to 7536870 11 + TSS region transcription start site region 154761
Tssr154762 19 7536872 to 7536888 16 + TSS region transcription start site region 154762
Tssr154763 19 7536893 to 7536912 19 + TSS region transcription start site region 154763
Tssr154764 19 7537760 to 7537776 16 + TSS region transcription start site region 154764
Tssr154765 19 7539131 to 7539133 2 + TSS region transcription start site region 154765
Tssr154766 19 7557452 to 7557465 13 + TSS region transcription start site region 154766
Plaat3 19 7557459 to 7588545 31086 + protein coding gene phospholipase A and acyltransferase 3
Tssr154767 19 7557473 to 7557497 24 + TSS region transcription start site region 154767
Tssr154768 19 7557500 to 7557513 13 + TSS region transcription start site region 154768
Cpgi10561 19 7557555 to 7557788 233 CpG island CpG island 10561
Tssr154769 19 7557642 to 7557689 47 + TSS region transcription start site region 154769
Tssr154770 19 7559642 to 7559665 23 + TSS region transcription start site region 154770
Tssr154771 19 7561728 to 7561746 18 + TSS region transcription start site region 154771
Tssr154772 19 7579132 to 7579146 14 + TSS region transcription start site region 154772
Tssr154773 19 7581335 to 7581347 12 + TSS region transcription start site region 154773
Tssr157992 19 7583230 to 7583251 21 - TSS region transcription start site region 157992
Tssr157993 19 7583265 to 7583273 8 - TSS region transcription start site region 157993
Tssr157994 19 7583332 to 7583336 4 - TSS region transcription start site region 157994
D19Mit78 19 7591408 to 7591541 133 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 78
Tssr154774 19 7591806 to 7591810 4 + TSS region transcription start site region 154774
Lgals12 19 7596660 to 7607193 10533 - protein coding gene lectin, galactose binding, soluble 12
Tssr157995 19 7597969 to 7597987 18 - TSS region transcription start site region 157995
Tssr157996 19 7606954 to 7606965 11 - TSS region transcription start site region 157996
Tssr157997 19 7607140 to 7607203 63 - TSS region transcription start site region 157997
Tssr157998 19 7610465 to 7610483 18 - TSS region transcription start site region 157998
Cpgi10562 19 7612125 to 7612837 712 CpG island CpG island 10562
Tssr154775 19 7612496 to 7612507 11 + TSS region transcription start site region 154775
Tssr154776 19 7612519 to 7612618 99 + TSS region transcription start site region 154776
Plaat5 19 7612569 to 7639238 26669 + protein coding gene phospholipase A and acyltransferase 5
D19Mit44 19 7641313 to 7641425 112 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 44
Gm16437 19 7668287 to 7668793 506 + pseudogene predicted pseudogene 16437
Slc22a19 19 7673075 to 7711310 38235 - protein coding gene solute carrier family 22 (organic anion transporter), member 19
Gm15967 19 7695902 to 7697016 1114 - pseudogene predicted gene 15967
Gm15968 19 7703946 to 7705113 1167 - pseudogene predicted gene 15968
Tssr157999 19 7711086 to 7711106 20 - TSS region transcription start site region 157999
Tssr158000 19 7711235 to 7711246 11 - TSS region transcription start site region 158000
Tssr158001 19 7711263 to 7711313 50 - TSS region transcription start site region 158001
Gm8157 19 7727182 to 7727673 491 - pseudogene predicted gene 8157
Gm18544 19 7729370 to 7729953 583 + pseudogene predicted gene, 18544
Slc22a26 19 7781041 to 7802667 21626 - protein coding gene solute carrier family 22 (organic cation transporter), member 26
Tssr158002 19 7802185 to 7802200 15 - TSS region transcription start site region 158002
Tssr158003 19 7802646 to 7802666 20 - TSS region transcription start site region 158003
Tssr158004 19 7802669 to 7802680 11 - TSS region transcription start site region 158004
Tssr158005 19 7802684 to 7802690 6 - TSS region transcription start site region 158005
Gm7096 19 7806297 to 7848669 42372 - pseudogene predicted gene 7096
Slc22a27 19 7864388 to 7966027 101639 - protein coding gene solute carrier family 22, member 27
Gm24951 19 7959530 to 7959638 108 - miRNA gene predicted gene, 24951
Gm6192 19 7959743 to 7961107 1364 - pseudogene predicted gene 6192
Tssr158006 19 7961168 to 7961170 2 - TSS region transcription start site region 158006
Tssr158007 19 7966009 to 7966037 28 - TSS region transcription start site region 158007
Tssr158008 19 7966598 to 7966601 3 - TSS region transcription start site region 158008
Gm6386 19 7975735 to 7978339 2604 + pseudogene predicted gene 6386
9530053H05Rik 19 8019554 to 8034087 14533 unclassified non-coding RNA gene RIKEN cDNA 9530053H05 gene
Slc22a28 19 8062209 to 8131982 69773 - protein coding gene solute carrier family 22, member 28
Slc22a29 19 8160165 to 8218900 58735 - protein coding gene solute carrier family 22. member 29
Tssr158009 19 8218832 to 8218849 17 - TSS region transcription start site region 158009
Gm41804 19 8251312 to 8289649 38337 + lncRNA gene predicted gene, 41804
Cpgi10563 19 8251997 to 8252704 707 CpG island CpG island 10563
Tssr158010 19 8252273 to 8252290 17 - TSS region transcription start site region 158010
Gm7105 19 8255938 to 8257662 1724 - pseudogene predicted gene 7105
Tssr158011 19 8257646 to 8257649 3 - TSS region transcription start site region 158011
Tssr158012 19 8262602 to 8262649 47 - TSS region transcription start site region 158012
Tssr158013 19 8263190 to 8263199 9 - TSS region transcription start site region 158013
Gm8184 19 8272397 to 8275004 2607 + pseudogene predicted gene 8184
Slc22a30 19 8335371 to 8405111 69740 - protein coding gene solute carrier family 22, member 30
Tssr158014 19 8344578 to 8344582 4 - TSS region transcription start site region 158014
Gm8189 19 8477273 to 8541800 64527 - pseudogene predicted gene 8189
Tssr158015 19 8479030 to 8479034 4 - TSS region transcription start site region 158015
Tssr158016 19 8518975 to 8518998 23 - TSS region transcription start site region 158016
Cpgi10564 19 8569626 to 8569815 189 CpG island CpG island 10564
Gm6425 19 8588407 to 8589196 789 - pseudogene predicted pseudogene 6425
Tssr154777 19 8591173 to 8591180 7 + TSS region transcription start site region 154777
Slc22a8 19 8591254 to 8611834 20580 + protein coding gene solute carrier family 22 (organic anion transporter), member 8
Tssr154778 19 8591277 to 8591300 23 + TSS region transcription start site region 154778
Tssr154779 19 8593175 to 8593192 17 + TSS region transcription start site region 154779
Tssr154780 19 8594051 to 8594069 18 + TSS region transcription start site region 154780
Tssr154781 19 8594071 to 8594127 56 + TSS region transcription start site region 154781
Tssr154782 19 8594147 to 8594154 7 + TSS region transcription start site region 154782
Gm36394 19 8611932 to 8621184 9252 - lncRNA gene predicted gene, 36394
Tssr154783 19 8617991 to 8618000 9 + TSS region transcription start site region 154783
Slc22a6 19 8617996 to 8628299 10303 + protein coding gene solute carrier family 22 (organic anion transporter), member 6
Tssr154784 19 8618005 to 8618044 39 + TSS region transcription start site region 154784
Tssr154785 19 8618046 to 8618056 10 + TSS region transcription start site region 154785
Tssr154786 19 8618133 to 8618153 20 + TSS region transcription start site region 154786
Tssr154787 19 8618160 to 8618184 24 + TSS region transcription start site region 154787
Tssr154788 19 8618189 to 8618200 11 + TSS region transcription start site region 154788
Tssr154789 19 8618325 to 8618337 12 + TSS region transcription start site region 154789
9830166K06Rik 19 8651796 to 8663335 11539 - lncRNA gene RIKEN cDNA 9830166K06 gene
Cpgi10565 19 8661878 to 8662434 556 CpG island CpG island 10565
Cpgi10566 19 8662458 to 8662654 196 CpG island CpG island 10566
Tssr158017 19 8663289 to 8663314 25 - TSS region transcription start site region 158017
Tssr158018 19 8663318 to 8663339 21 - TSS region transcription start site region 158018
Chrm1 19 8664005 to 8683606 19601 + protein coding gene cholinergic receptor, muscarinic 1, CNS
Tssr154790 19 8664046 to 8664120 74 + TSS region transcription start site region 154790
Tssr154791 19 8664306 to 8664337 31 + TSS region transcription start site region 154791
Tssr154792 19 8664339 to 8664354 15 + TSS region transcription start site region 154792
Tssr154793 19 8664366 to 8664381 15 + TSS region transcription start site region 154793
Tssr154794 19 8664383 to 8664394 11 + TSS region transcription start site region 154794
Tssr154795 19 8664395 to 8664419 24 + TSS region transcription start site region 154795
Tssr154796 19 8667759 to 8667762 3 + TSS region transcription start site region 154796
Gm22820 19 8681835 to 8682163 328 - unclassified non-coding RNA gene predicted gene, 22820
Tssr154797 19 8702825 to 8702839 14 + TSS region transcription start site region 154797
Slc3a2 19 8706882 to 8723369 16487 - protein coding gene solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
Tssr158019 19 8707793 to 8707806 13 - TSS region transcription start site region 158019
Tssr158020 19 8707841 to 8707852 11 - TSS region transcription start site region 158020
Tssr158021 19 8707860 to 8707872 12 - TSS region transcription start site region 158021
Tssr158022 19 8707879 to 8707897 18 - TSS region transcription start site region 158022
Tssr158023 19 8708018 to 8708038 20 - TSS region transcription start site region 158023
Tssr158024 19 8708044 to 8708055 11 - TSS region transcription start site region 158024
Tssr158025 19 8708299 to 8708303 4 - TSS region transcription start site region 158025
Tssr158026 19 8709068 to 8709128 60 - TSS region transcription start site region 158026
Tssr158027 19 8709256 to 8709267 11 - TSS region transcription start site region 158027
Tssr158028 19 8709381 to 8709417 36 - TSS region transcription start site region 158028
Tssr158029 19 8709577 to 8709627 50 - TSS region transcription start site region 158029
Tssr158030 19 8709740 to 8709785 45 - TSS region transcription start site region 158030
Tssr158031 19 8711866 to 8711892 26 - TSS region transcription start site region 158031
Tssr158032 19 8712035 to 8712040 5 - TSS region transcription start site region 158032
Tssr154798 19 8712221 to 8712234 13 + TSS region transcription start site region 154798
Tssr158033 19 8712888 to 8712952 64 - TSS region transcription start site region 158033
Tssr158034 19 8712967 to 8713023 56 - TSS region transcription start site region 158034
Cpgi10567 19 8713251 to 8714005 754 CpG island CpG island 10567
Tssr158035 19 8713362 to 8713404 42 - TSS region transcription start site region 158035
Tssr158036 19 8713862 to 8713881 19 - TSS region transcription start site region 158036
Tssr158037 19 8713886 to 8713893 7 - TSS region transcription start site region 158037
Tssr158038 19 8714200 to 8714207 7 - TSS region transcription start site region 158038
Tssr158039 19 8714304 to 8714316 12 - TSS region transcription start site region 158039
Tssr158040 19 8714326 to 8714336 10 - TSS region transcription start site region 158040
Tssr158041 19 8714363 to 8714364 1 - TSS region transcription start site region 158041
Tssr158042 19 8714394 to 8714414 20 - TSS region transcription start site region 158042
Tssr158043 19 8714440 to 8714450 10 - TSS region transcription start site region 158043
Tssr158044 19 8716005 to 8716021 16 - TSS region transcription start site region 158044
Cpgi10568 19 8722853 to 8723729 876 CpG island CpG island 10568
Tssr154799 19 8722944 to 8722962 18 + TSS region transcription start site region 154799
Tssr5432 19 8722972 to 8722986 14 + TSS region transcription start site region 5432
Tssr158045 19 8723125 to 8723135 10 - TSS region transcription start site region 158045
Tssr158046 19 8723166 to 8723287 121 - TSS region transcription start site region 158046
Tssr158047 19 8723356 to 8723378 22 - TSS region transcription start site region 158047
Tssr154800 19 8723478 to 8723514 36 + TSS region transcription start site region 154800
Snhg1 19 8723487 to 8726326 2839 + lncRNA gene small nucleolar RNA host gene 1
Gm25855 19 8723993 to 8724064 71 + snoRNA gene predicted gene, 25855
Tssr154801 19 8723993 to 8723997 4 + TSS region transcription start site region 154801
Tssr154802 19 8724113 to 8724143 30 + TSS region transcription start site region 154802
Gm25894 19 8724251 to 8724325 74 + snoRNA gene predicted gene, 25894
Tssr5433 19 8724383 to 8724412 29 + TSS region transcription start site region 5433
Gm24452 19 8724531 to 8724602 71 + snoRNA gene predicted gene, 24452
Gm24453 19 8724868 to 8724943 75 + snoRNA gene predicted gene, 24453
Gm22744 19 8725092 to 8725156 64 + snoRNA gene predicted gene, 22744
Tssr154803 19 8725094 to 8725097 3 + TSS region transcription start site region 154803
Gm22680 19 8725341 to 8725409 68 + snoRNA gene predicted gene, 22680
Gm23246 19 8725594 to 8725660 66 + snoRNA gene predicted gene, 23246
Tssr154804 19 8725860 to 8725874 14 + TSS region transcription start site region 154804
Snord22 19 8725866 to 8725991 125 + snoRNA gene small nucleolar RNA, C/D box 22
Cpgi10569 19 8735664 to 8736291 627 CpG island CpG island 10569
Tssr154805 19 8735792 to 8735807 15 + TSS region transcription start site region 154805
Tssr154806 19 8735808 to 8735864 56 + TSS region transcription start site region 154806
Wdr74 19 8735827 to 8740624 4797 + protein coding gene WD repeat domain 74
Gm45736 19 8735841 to 8741223 5382 + protein coding gene predicted gene 45736
Tssr158048 19 8740571 to 8740579 8 - TSS region transcription start site region 158048
Tssr154807 19 8740702 to 8740707 5 + TSS region transcription start site region 154807
Tssr154808 19 8740712 to 8740723 11 + TSS region transcription start site region 154808
1700092M07Rik 19 8740718 to 8741225 507 + protein coding gene RIKEN cDNA 1700092M07 gene
Tssr154809 19 8740739 to 8740767 28 + TSS region transcription start site region 154809
Cpgi10570 19 8741032 to 8742437 1405 CpG island CpG island 10570
Tssr154810 19 8741415 to 8741461 46 + TSS region transcription start site region 154810
Stx5a 19 8741424 to 8755642 14218 + protein coding gene syntaxin 5A
Tssr154811 19 8741473 to 8741503 30 + TSS region transcription start site region 154811
Tssr154812 19 8741794 to 8741811 17 + TSS region transcription start site region 154812
Tssr154813 19 8741815 to 8741865 50 + TSS region transcription start site region 154813
Mir6992 19 8742971 to 8743079 108 + miRNA gene microRNA 6992
1700023D09Rik 19 8754789 to 8756969 2180 - lncRNA gene RIKEN cDNA 1700023D09 gene
Cpgi10571 19 8756683 to 8757585 902 CpG island CpG island 10571
Tssr154814 19 8756723 to 8756744 21 + TSS region transcription start site region 154814
Tssr158049 19 8756898 to 8756913 15 - TSS region transcription start site region 158049
Tssr154815 19 8757079 to 8757093 14 + TSS region transcription start site region 154815
Tssr154816 19 8757099 to 8757126 27 + TSS region transcription start site region 154816
Nxf1 19 8757103 to 8770910 13807 + protein coding gene nuclear RNA export factor 1
Tssr154817 19 8757139 to 8757155 16 + TSS region transcription start site region 154817
Tssr154818 19 8757414 to 8757447 33 + TSS region transcription start site region 154818
Tssr154819 19 8765030 to 8765034 4 + TSS region transcription start site region 154819
Tssr154820 19 8766714 to 8766727 13 + TSS region transcription start site region 154820
Cpgi10572 19 8770849 to 8771449 600 CpG island CpG island 10572
Tssr154821 19 8770983 to 8771019 36 + TSS region transcription start site region 154821
Tmem223 19 8770996 to 8772475 1479 + protein coding gene transmembrane protein 223
Tssr154822 19 8771037 to 8771055 18 + TSS region transcription start site region 154822
Tssr154823 19 8771058 to 8771069 11 + TSS region transcription start site region 154823
Tmem179b 19 8772522 to 8774467 1945 - protein coding gene transmembrane protein 179B
Tssr158050 19 8773567 to 8773595 28 - TSS region transcription start site region 158050
Cpgi10573 19 8774233 to 8775322 1089 CpG island CpG island 10573
Taf6l 19 8774354 to 8786417 12063 - protein coding gene TATA-box binding protein associated factor 6 like
Tssr158051 19 8774431 to 8774470 39 - TSS region transcription start site region 158051
Tssr154824 19 8774484 to 8774496 12 + TSS region transcription start site region 154824
Gm2518 19 8774485 to 8776962 2477 + pseudogene predicted gene 2518
Cpgi10574 19 8785989 to 8786527 538 CpG island CpG island 10574
Tssr158052 19 8786245 to 8786270 25 - TSS region transcription start site region 158052
Tssr158053 19 8786272 to 8786297 25 - TSS region transcription start site region 158053
Tssr158054 19 8786408 to 8786422 14 - TSS region transcription start site region 158054
Tssr158055 19 8786431 to 8786440 9 - TSS region transcription start site region 158055
Polr2g 19 8793129 to 8798557 5428 - protein coding gene polymerase (RNA) II (DNA directed) polypeptide G
Cpgi10575 19 8798170 to 8798657 487 CpG island CpG island 10575