Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:7476598-8456601

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rtn3 19 7425901 to 7483289 57388 - protein coding gene reticulon 3
Tssr157986 19 7482336 to 7482341 5 - TSS region transcription start site region 157986
Cpgi10559 19 7482492 to 7483493 1001 CpG island CpG island 10559
Tssr5428 19 7482981 to 7482984 3 - TSS region transcription start site region 5428
Tssr5429 19 7483059 to 7483068 9 - TSS region transcription start site region 5429
Tssr157987 19 7483085 to 7483123 38 - TSS region transcription start site region 157987
Tssr157988 19 7483137 to 7483148 11 - TSS region transcription start site region 157988
Tssr5430 19 7483152 to 7483164 12 - TSS region transcription start site region 5430
Tssr157989 19 7483199 to 7483210 11 - TSS region transcription start site region 157989
Tssr157990 19 7483212 to 7483229 17 - TSS region transcription start site region 157990
Tssr157991 19 7483241 to 7483279 38 - TSS region transcription start site region 157991
Tssr5431 19 7483288 to 7483290 2 - TSS region transcription start site region 5431
Cpgi10560 19 7493882 to 7495075 1193 CpG island CpG island 10560
Tssr154754 19 7494020 to 7494031 11 + TSS region transcription start site region 154754
Tssr154755 19 7494033 to 7494068 35 + TSS region transcription start site region 154755
Atl3 19 7494040 to 7538608 44568 + protein coding gene atlastin GTPase 3
Tssr154756 19 7494245 to 7494264 19 + TSS region transcription start site region 154756
Tssr154757 19 7494427 to 7494462 35 + TSS region transcription start site region 154757
Tssr154758 19 7494463 to 7494474 11 + TSS region transcription start site region 154758
Tssr154759 19 7494503 to 7494506 3 + TSS region transcription start site region 154759
Tssr154760 19 7494522 to 7494598 76 + TSS region transcription start site region 154760
Tssr154761 19 7536859 to 7536870 11 + TSS region transcription start site region 154761
Tssr154762 19 7536872 to 7536888 16 + TSS region transcription start site region 154762
Tssr154763 19 7536893 to 7536912 19 + TSS region transcription start site region 154763
Tssr154764 19 7537760 to 7537776 16 + TSS region transcription start site region 154764
Tssr154765 19 7539131 to 7539133 2 + TSS region transcription start site region 154765
Tssr154766 19 7557452 to 7557465 13 + TSS region transcription start site region 154766
Plaat3 19 7557459 to 7588545 31086 + protein coding gene phospholipase A and acyltransferase 3
Tssr154767 19 7557473 to 7557497 24 + TSS region transcription start site region 154767
Tssr154768 19 7557500 to 7557513 13 + TSS region transcription start site region 154768
Cpgi10561 19 7557555 to 7557788 233 CpG island CpG island 10561
Tssr154769 19 7557642 to 7557689 47 + TSS region transcription start site region 154769
Tssr154770 19 7559642 to 7559665 23 + TSS region transcription start site region 154770
Tssr154771 19 7561728 to 7561746 18 + TSS region transcription start site region 154771
Tssr154772 19 7579132 to 7579146 14 + TSS region transcription start site region 154772
Tssr154773 19 7581335 to 7581347 12 + TSS region transcription start site region 154773
Tssr157992 19 7583230 to 7583251 21 - TSS region transcription start site region 157992
Tssr157993 19 7583265 to 7583273 8 - TSS region transcription start site region 157993
Tssr157994 19 7583332 to 7583336 4 - TSS region transcription start site region 157994
D19Mit78 19 7591408 to 7591541 133 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 78
Tssr154774 19 7591806 to 7591810 4 + TSS region transcription start site region 154774
Lgals12 19 7596660 to 7607193 10533 - protein coding gene lectin, galactose binding, soluble 12
Tssr157995 19 7597969 to 7597987 18 - TSS region transcription start site region 157995
Tssr157996 19 7606954 to 7606965 11 - TSS region transcription start site region 157996
Tssr157997 19 7607140 to 7607203 63 - TSS region transcription start site region 157997
Tssr157998 19 7610465 to 7610483 18 - TSS region transcription start site region 157998
Cpgi10562 19 7612125 to 7612837 712 CpG island CpG island 10562
Tssr154775 19 7612496 to 7612507 11 + TSS region transcription start site region 154775
Tssr154776 19 7612519 to 7612618 99 + TSS region transcription start site region 154776
Plaat5 19 7612569 to 7639238 26669 + protein coding gene phospholipase A and acyltransferase 5
D19Mit44 19 7641313 to 7641425 112 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 44
Gm16437 19 7668287 to 7668793 506 + pseudogene predicted pseudogene 16437
Slc22a19 19 7673075 to 7711310 38235 - protein coding gene solute carrier family 22 (organic anion transporter), member 19
Gm15967 19 7695902 to 7697016 1114 - pseudogene predicted gene 15967
Gm15968 19 7703946 to 7705113 1167 - pseudogene predicted gene 15968
Tssr157999 19 7711086 to 7711106 20 - TSS region transcription start site region 157999
Tssr158000 19 7711235 to 7711246 11 - TSS region transcription start site region 158000
Tssr158001 19 7711263 to 7711313 50 - TSS region transcription start site region 158001
Gm8157 19 7727182 to 7727673 491 - pseudogene predicted gene 8157
Gm18544 19 7729370 to 7729953 583 + pseudogene predicted gene, 18544
Slc22a26 19 7781041 to 7802667 21626 - protein coding gene solute carrier family 22 (organic cation transporter), member 26
Tssr158002 19 7802185 to 7802200 15 - TSS region transcription start site region 158002
Tssr158003 19 7802646 to 7802666 20 - TSS region transcription start site region 158003
Tssr158004 19 7802669 to 7802680 11 - TSS region transcription start site region 158004
Tssr158005 19 7802684 to 7802690 6 - TSS region transcription start site region 158005
Gm7096 19 7806297 to 7848669 42372 - pseudogene predicted gene 7096
Slc22a27 19 7864388 to 7966027 101639 - protein coding gene solute carrier family 22, member 27
Gm24951 19 7959530 to 7959638 108 - miRNA gene predicted gene, 24951
Gm6192 19 7959743 to 7961107 1364 - pseudogene predicted gene 6192
Tssr158006 19 7961168 to 7961170 2 - TSS region transcription start site region 158006
Tssr158007 19 7966009 to 7966037 28 - TSS region transcription start site region 158007
Tssr158008 19 7966598 to 7966601 3 - TSS region transcription start site region 158008
Gm6386 19 7975735 to 7978339 2604 + pseudogene predicted gene 6386
9530053H05Rik 19 8019554 to 8034087 14533 unclassified non-coding RNA gene RIKEN cDNA 9530053H05 gene
Slc22a28 19 8062209 to 8131982 69773 - protein coding gene solute carrier family 22, member 28
Slc22a29 19 8160165 to 8218900 58735 - protein coding gene solute carrier family 22. member 29
Tssr158009 19 8218832 to 8218849 17 - TSS region transcription start site region 158009
Gm41804 19 8251312 to 8289649 38337 + lncRNA gene predicted gene, 41804
Cpgi10563 19 8251997 to 8252704 707 CpG island CpG island 10563
Tssr158010 19 8252273 to 8252290 17 - TSS region transcription start site region 158010
Gm7105 19 8255938 to 8257662 1724 - pseudogene predicted gene 7105
Tssr158011 19 8257646 to 8257649 3 - TSS region transcription start site region 158011
Tssr158012 19 8262602 to 8262649 47 - TSS region transcription start site region 158012
Tssr158013 19 8263190 to 8263199 9 - TSS region transcription start site region 158013
Gm8184 19 8272397 to 8275004 2607 + pseudogene predicted gene 8184
Slc22a30 19 8335371 to 8405111 69740 - protein coding gene solute carrier family 22, member 30
Tssr158014 19 8344578 to 8344582 4 - TSS region transcription start site region 158014