Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:7314388-8516027

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mark2 19 7275396 to 7341860 66464 - protein coding gene MAP/microtubule affinity regulating kinase 2
Tssr157963 19 7323084 to 7323087 3 - TSS region transcription start site region 157963
D830016O14Rik 19 7324970 to 7327375 2405 unclassified gene RIKEN cDNA D830016O14 gene
Tssr157964 19 7333140 to 7333143 3 - TSS region transcription start site region 157964
Tssr157965 19 7334206 to 7334229 23 - TSS region transcription start site region 157965
Cpgi10553 19 7340485 to 7342296 1811 CpG island CpG island 10553
Tssr157966 19 7341571 to 7341647 76 - TSS region transcription start site region 157966
Tssr157967 19 7341792 to 7341829 37 - TSS region transcription start site region 157967
Tssr157968 19 7341848 to 7341863 15 - TSS region transcription start site region 157968
Spindoc 19 7356464 to 7383026 26562 - protein coding gene spindlin interactor and repressor of chromatin binding
Gm46647 19 7370339 to 7372580 2241 - lncRNA gene predicted gene, 46647
Cpgi10554 19 7382173 to 7383342 1169 CpG island CpG island 10554
Tssr157969 19 7382434 to 7382449 15 - TSS region transcription start site region 157969
Tssr157970 19 7382944 to 7382976 32 - TSS region transcription start site region 157970
Tssr157971 19 7382985 to 7383000 15 - TSS region transcription start site region 157971
1700105P06Rik 19 7383003 to 7383561 558 + antisense lncRNA gene RIKEN cDNA 1700105P06 gene
Tssr157972 19 7383020 to 7383025 5 - TSS region transcription start site region 157972
Tssr157973 19 7383029 to 7383063 34 - TSS region transcription start site region 157973
Tssr154750 19 7383123 to 7383135 12 + TSS region transcription start site region 154750
Tssr154751 19 7383143 to 7383160 17 + TSS region transcription start site region 154751
Rab11b-ps2 19 7398421 to 7399077 656 - pseudogene RAB11B, member RAS oncogene family, pseudogene 2
Cpgi10555 19 7398829 to 7399055 226 CpG island CpG island 10555
Gm18842 19 7402834 to 7403431 597 - pseudogene predicted gene, 18842
Cpgi10556 19 7416584 to 7418602 2018 CpG island CpG island 10556
Tssr154752 19 7417127 to 7417229 102 + TSS region transcription start site region 154752
Tssr154753 19 7417586 to 7417650 64 + TSS region transcription start site region 154753
2700081O15Rik 19 7417625 to 7425904 8279 + protein coding gene RIKEN cDNA 2700081O15 gene
Tssr157974 19 7418306 to 7418309 3 - TSS region transcription start site region 157974
Cpgi10557 19 7421310 to 7421474 164 CpG island CpG island 10557
Cpgi10558 19 7421952 to 7423890 1938 CpG island CpG island 10558
Mir6991 19 7422573 to 7422642 69 + miRNA gene microRNA 6991
Rtn3 19 7425901 to 7483289 57388 - protein coding gene reticulon 3
Tssr157975 19 7426519 to 7426559 40 - TSS region transcription start site region 157975
Tssr157976 19 7426822 to 7426835 13 - TSS region transcription start site region 157976
Tssr157977 19 7427141 to 7427156 15 - TSS region transcription start site region 157977
Tssr157978 19 7427673 to 7427700 27 - TSS region transcription start site region 157978
Tssr157979 19 7431018 to 7431037 19 - TSS region transcription start site region 157979
Tssr157980 19 7432008 to 7432052 44 - TSS region transcription start site region 157980
Tssr157981 19 7432494 to 7432512 18 - TSS region transcription start site region 157981
Tssr157982 19 7439658 to 7439668 10 - TSS region transcription start site region 157982
Tssr157983 19 7441560 to 7441579 19 - TSS region transcription start site region 157983
Tssr157984 19 7441580 to 7441616 36 - TSS region transcription start site region 157984
Tssr157985 19 7469605 to 7469607 2 - TSS region transcription start site region 157985
A830080L01Rik 19 7472708 to 7476412 3704 unclassified gene RIKEN cDNA A830080L01 gene
Tssr157986 19 7482336 to 7482341 5 - TSS region transcription start site region 157986
Cpgi10559 19 7482492 to 7483493 1001 CpG island CpG island 10559
Tssr5428 19 7482981 to 7482984 3 - TSS region transcription start site region 5428
Tssr5429 19 7483059 to 7483068 9 - TSS region transcription start site region 5429
Tssr157987 19 7483085 to 7483123 38 - TSS region transcription start site region 157987
Tssr157988 19 7483137 to 7483148 11 - TSS region transcription start site region 157988
Tssr5430 19 7483152 to 7483164 12 - TSS region transcription start site region 5430
Tssr157989 19 7483199 to 7483210 11 - TSS region transcription start site region 157989
Tssr157990 19 7483212 to 7483229 17 - TSS region transcription start site region 157990
Tssr157991 19 7483241 to 7483279 38 - TSS region transcription start site region 157991
Tssr5431 19 7483288 to 7483290 2 - TSS region transcription start site region 5431
Cpgi10560 19 7493882 to 7495075 1193 CpG island CpG island 10560
Tssr154754 19 7494020 to 7494031 11 + TSS region transcription start site region 154754
Tssr154755 19 7494033 to 7494068 35 + TSS region transcription start site region 154755
Atl3 19 7494040 to 7538608 44568 + protein coding gene atlastin GTPase 3
Tssr154756 19 7494245 to 7494264 19 + TSS region transcription start site region 154756
Tssr154757 19 7494427 to 7494462 35 + TSS region transcription start site region 154757
Tssr154758 19 7494463 to 7494474 11 + TSS region transcription start site region 154758
Tssr154759 19 7494503 to 7494506 3 + TSS region transcription start site region 154759
Tssr154760 19 7494522 to 7494598 76 + TSS region transcription start site region 154760
Tssr154761 19 7536859 to 7536870 11 + TSS region transcription start site region 154761
Tssr154762 19 7536872 to 7536888 16 + TSS region transcription start site region 154762
Tssr154763 19 7536893 to 7536912 19 + TSS region transcription start site region 154763
Tssr154764 19 7537760 to 7537776 16 + TSS region transcription start site region 154764
Tssr154765 19 7539131 to 7539133 2 + TSS region transcription start site region 154765
Tssr154766 19 7557452 to 7557465 13 + TSS region transcription start site region 154766
Plaat3 19 7557459 to 7588545 31086 + protein coding gene phospholipase A and acyltransferase 3
Tssr154767 19 7557473 to 7557497 24 + TSS region transcription start site region 154767
Tssr154768 19 7557500 to 7557513 13 + TSS region transcription start site region 154768
Cpgi10561 19 7557555 to 7557788 233 CpG island CpG island 10561
Tssr154769 19 7557642 to 7557689 47 + TSS region transcription start site region 154769
Tssr154770 19 7559642 to 7559665 23 + TSS region transcription start site region 154770
Tssr154771 19 7561728 to 7561746 18 + TSS region transcription start site region 154771
Tssr154772 19 7579132 to 7579146 14 + TSS region transcription start site region 154772
Tssr154773 19 7581335 to 7581347 12 + TSS region transcription start site region 154773
Tssr157992 19 7583230 to 7583251 21 - TSS region transcription start site region 157992
Tssr157993 19 7583265 to 7583273 8 - TSS region transcription start site region 157993
Tssr157994 19 7583332 to 7583336 4 - TSS region transcription start site region 157994
D19Mit78 19 7591408 to 7591541 133 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 78
Tssr154774 19 7591806 to 7591810 4 + TSS region transcription start site region 154774
Lgals12 19 7596660 to 7607193 10533 - protein coding gene lectin, galactose binding, soluble 12
Tssr157995 19 7597969 to 7597987 18 - TSS region transcription start site region 157995
Tssr157996 19 7606954 to 7606965 11 - TSS region transcription start site region 157996
Tssr157997 19 7607140 to 7607203 63 - TSS region transcription start site region 157997
Tssr157998 19 7610465 to 7610483 18 - TSS region transcription start site region 157998
Cpgi10562 19 7612125 to 7612837 712 CpG island CpG island 10562
Tssr154775 19 7612496 to 7612507 11 + TSS region transcription start site region 154775
Tssr154776 19 7612519 to 7612618 99 + TSS region transcription start site region 154776
Plaat5 19 7612569 to 7639238 26669 + protein coding gene phospholipase A and acyltransferase 5
D19Mit44 19 7641313 to 7641425 112 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 44
Gm16437 19 7668287 to 7668793 506 + pseudogene predicted pseudogene 16437
Slc22a19 19 7673075 to 7711310 38235 - protein coding gene solute carrier family 22 (organic anion transporter), member 19
Gm15967 19 7695902 to 7697016 1114 - pseudogene predicted gene 15967
Gm15968 19 7703946 to 7705113 1167 - pseudogene predicted gene 15968
Tssr157999 19 7711086 to 7711106 20 - TSS region transcription start site region 157999
Tssr158000 19 7711235 to 7711246 11 - TSS region transcription start site region 158000
Tssr158001 19 7711263 to 7711313 50 - TSS region transcription start site region 158001
Gm8157 19 7727182 to 7727673 491 - pseudogene predicted gene 8157
Gm18544 19 7729370 to 7729953 583 + pseudogene predicted gene, 18544
Slc22a26 19 7781041 to 7802667 21626 - protein coding gene solute carrier family 22 (organic cation transporter), member 26
Tssr158002 19 7802185 to 7802200 15 - TSS region transcription start site region 158002
Tssr158003 19 7802646 to 7802666 20 - TSS region transcription start site region 158003
Tssr158004 19 7802669 to 7802680 11 - TSS region transcription start site region 158004
Tssr158005 19 7802684 to 7802690 6 - TSS region transcription start site region 158005
Gm7096 19 7806297 to 7848669 42372 - pseudogene predicted gene 7096
Slc22a27 19 7864388 to 7966027 101639 - protein coding gene solute carrier family 22, member 27
Gm24951 19 7959530 to 7959638 108 - miRNA gene predicted gene, 24951
Gm6192 19 7959743 to 7961107 1364 - pseudogene predicted gene 6192
Tssr158006 19 7961168 to 7961170 2 - TSS region transcription start site region 158006
Tssr158007 19 7966009 to 7966037 28 - TSS region transcription start site region 158007
Tssr158008 19 7966598 to 7966601 3 - TSS region transcription start site region 158008
Gm6386 19 7975735 to 7978339 2604 + pseudogene predicted gene 6386
9530053H05Rik 19 8019554 to 8034087 14533 unclassified non-coding RNA gene RIKEN cDNA 9530053H05 gene
Slc22a28 19 8062209 to 8131982 69773 - protein coding gene solute carrier family 22, member 28
Slc22a29 19 8160165 to 8218900 58735 - protein coding gene solute carrier family 22. member 29
Tssr158009 19 8218832 to 8218849 17 - TSS region transcription start site region 158009
Gm41804 19 8251312 to 8289649 38337 + lncRNA gene predicted gene, 41804
Cpgi10563 19 8251997 to 8252704 707 CpG island CpG island 10563
Tssr158010 19 8252273 to 8252290 17 - TSS region transcription start site region 158010
Gm7105 19 8255938 to 8257662 1724 - pseudogene predicted gene 7105
Tssr158011 19 8257646 to 8257649 3 - TSS region transcription start site region 158011
Tssr158012 19 8262602 to 8262649 47 - TSS region transcription start site region 158012
Tssr158013 19 8263190 to 8263199 9 - TSS region transcription start site region 158013
Gm8184 19 8272397 to 8275004 2607 + pseudogene predicted gene 8184
Slc22a30 19 8335371 to 8405111 69740 - protein coding gene solute carrier family 22, member 30
Tssr158014 19 8344578 to 8344582 4 - TSS region transcription start site region 158014
Gm8189 19 8477273 to 8541800 64527 - pseudogene predicted gene 8189
Tssr158015 19 8479030 to 8479034 4 - TSS region transcription start site region 158015