Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:7030607-7381794

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stip1 19 7020696 to 7040026 19330 - protein coding gene stress-induced phosphoprotein 1
Tssr157929 19 7032548 to 7032577 29 - TSS region transcription start site region 157929
Cpgi10542 19 7039190 to 7040796 1606 CpG island CpG island 10542
Tssr154731 19 7039526 to 7039538 12 + TSS region transcription start site region 154731
Tssr154732 19 7039592 to 7039608 16 + TSS region transcription start site region 154732
Tssr157930 19 7039902 to 7039925 23 - TSS region transcription start site region 157930
Tssr157931 19 7039931 to 7039980 49 - TSS region transcription start site region 157931
Tssr157932 19 7039987 to 7039994 7 - TSS region transcription start site region 157932
Cpgi10543 19 7056360 to 7057572 1212 CpG island CpG island 10543
Tssr154733 19 7056731 to 7056773 42 + TSS region transcription start site region 154733
Macrod1 19 7056768 to 7198061 141293 + protein coding gene MACRO domain containing 1
Tssr154734 19 7056781 to 7056809 28 + TSS region transcription start site region 154734
Tssr154735 19 7056867 to 7056933 66 + TSS region transcription start site region 154735
Tssr154736 19 7056949 to 7056950 1 + TSS region transcription start site region 154736
Cpgi10544 19 7057633 to 7057934 301 CpG island CpG island 10544
5730409K12Rik 19 7084710 to 7090741 6031 + unclassified gene RIKEN cDNA 5730409K12 gene
Tssr157933 19 7089603 to 7089606 3 - TSS region transcription start site region 157933
Tssr157934 19 7090749 to 7090752 3 - TSS region transcription start site region 157934
Flrt1 19 7092014 to 7105729 13715 - protein coding gene fibronectin leucine rich transmembrane protein 1
Tssr157935 19 7094861 to 7094866 5 - TSS region transcription start site region 157935
D19Mit94 19 7120593 to 7120693 100 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 94
Gm38621 19 7131506 to 7136039 4533 + lncRNA gene predicted gene, 38621
Cpgi10545 19 7143731 to 7144383 652 CpG island CpG island 10545
Cpgi10546 19 7164791 to 7166645 1854 CpG island CpG island 10546
Tssr157936 19 7165991 to 7166099 108 - TSS region transcription start site region 157936
Cpgi10547 19 7182527 to 7182806 279 CpG island CpG island 10547
Cpgi10548 19 7196105 to 7196946 841 CpG island CpG island 10548
Otub1 19 7198206 to 7206284 8078 - protein coding gene OTU domain, ubiquitin aldehyde binding 1
Tssr157937 19 7198928 to 7198935 7 - TSS region transcription start site region 157937
Tssr157938 19 7199985 to 7200002 17 - TSS region transcription start site region 157938
Tssr157939 19 7202338 to 7202356 18 - TSS region transcription start site region 157939
Cpgi10549 19 7205607 to 7206794 1187 CpG island CpG island 10549
Tssr157940 19 7206232 to 7206242 10 - TSS region transcription start site region 157940
Tssr157941 19 7206261 to 7206301 40 - TSS region transcription start site region 157941
Tssr154737 19 7206683 to 7206713 30 + TSS region transcription start site region 154737
Cox8a 19 7215158 to 7217616 2458 - protein coding gene cytochrome c oxidase subunit 8A
Tssr157942 19 7215367 to 7215393 26 - TSS region transcription start site region 157942
Cpgi10550 19 7217131 to 7217903 772 CpG island CpG island 10550
Tssr157943 19 7217523 to 7217528 5 - TSS region transcription start site region 157943
Tssr157944 19 7217529 to 7217543 14 - TSS region transcription start site region 157944
Tssr157945 19 7217549 to 7217580 31 - TSS region transcription start site region 157945
Tssr154738 19 7217861 to 7217868 7 + TSS region transcription start site region 154738
Tssr154739 19 7221869 to 7221877 8 + TSS region transcription start site region 154739
Naa40 19 7225668 to 7241222 15554 - protein coding gene N(alpha)-acetyltransferase 40, NatD catalytic subunit
Tssr157946 19 7232991 to 7232994 3 - TSS region transcription start site region 157946
Cpgi10551 19 7240437 to 7241599 1162 CpG island CpG island 10551
Tssr157947 19 7240998 to 7241076 78 - TSS region transcription start site region 157947
Tssr157948 19 7241147 to 7241160 13 - TSS region transcription start site region 157948
Tssr157949 19 7241162 to 7241199 37 - TSS region transcription start site region 157949
Tssr157950 19 7241216 to 7241226 10 - TSS region transcription start site region 157950
Gm22113 19 7246709 to 7246812 103 + snRNA gene predicted gene, 22113
Gm23997 19 7259941 to 7260061 120 + rRNA gene predicted gene, 23997
Tssr157951 19 7261418 to 7261450 32 - TSS region transcription start site region 157951
Tssr154740 19 7265171 to 7265182 11 + TSS region transcription start site region 154740
Tssr157952 19 7265910 to 7265921 11 - TSS region transcription start site region 157952
Cpgi10552 19 7267061 to 7269385 2324 CpG island CpG island 10552
Rcor2 19 7267394 to 7275225 7831 + protein coding gene REST corepressor 2
Tssr157953 19 7267431 to 7267449 18 - TSS region transcription start site region 157953
Tssr154741 19 7268194 to 7268212 18 + TSS region transcription start site region 154741
Tssr154742 19 7268235 to 7268294 59 + TSS region transcription start site region 154742
Tssr154743 19 7268296 to 7268313 17 + TSS region transcription start site region 154743
Tssr154744 19 7268713 to 7268732 19 + TSS region transcription start site region 154744
Tssr154745 19 7270135 to 7270155 20 + TSS region transcription start site region 154745
Tssr154746 19 7274442 to 7274453 11 + TSS region transcription start site region 154746
Mark2 19 7275396 to 7341860 66464 - protein coding gene MAP/microtubule affinity regulating kinase 2
Tssr157954 19 7275845 to 7275858 13 - TSS region transcription start site region 157954
Tssr157955 19 7275859 to 7275889 30 - TSS region transcription start site region 157955
Tssr157956 19 7275936 to 7275964 28 - TSS region transcription start site region 157956
Tssr157957 19 7288512 to 7288516 4 - TSS region transcription start site region 157957
Tssr157958 19 7295077 to 7295110 33 - TSS region transcription start site region 157958
Tssr157959 19 7295394 to 7295468 74 - TSS region transcription start site region 157959
Tssr5427 19 7297584 to 7297591 7 - TSS region transcription start site region 5427
Tssr157960 19 7297596 to 7297603 7 - TSS region transcription start site region 157960
Tssr157961 19 7297608 to 7297636 28 - TSS region transcription start site region 157961
Tssr157962 19 7297639 to 7297648 9 - TSS region transcription start site region 157962
Gm17227 19 7297654 to 7304361 6707 + antisense lncRNA gene predicted gene 17227
Tssr154747 19 7297674 to 7297693 19 + TSS region transcription start site region 154747
Tssr154748 19 7297710 to 7297722 12 + TSS region transcription start site region 154748
Tssr154749 19 7297724 to 7297733 9 + TSS region transcription start site region 154749
Tssr157963 19 7323084 to 7323087 3 - TSS region transcription start site region 157963
D830016O14Rik 19 7324970 to 7327375 2405 unclassified gene RIKEN cDNA D830016O14 gene
Tssr157964 19 7333140 to 7333143 3 - TSS region transcription start site region 157964
Tssr157965 19 7334206 to 7334229 23 - TSS region transcription start site region 157965
Cpgi10553 19 7340485 to 7342296 1811 CpG island CpG island 10553
Tssr157966 19 7341571 to 7341647 76 - TSS region transcription start site region 157966
Tssr157967 19 7341792 to 7341829 37 - TSS region transcription start site region 157967
Tssr157968 19 7341848 to 7341863 15 - TSS region transcription start site region 157968
Spindoc 19 7356464 to 7383026 26562 - protein coding gene spindlin interactor and repressor of chromatin binding
Gm46647 19 7370339 to 7372580 2241 - lncRNA gene predicted gene, 46647