Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:6979861-7209866

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fkbp2 19 6977741 to 6980461 2720 - protein coding gene FK506 binding protein 2
Cpgi10538 19 6979393 to 6980878 1485 CpG island CpG island 10538
Tssr157909 19 6979874 to 6979896 22 - TSS region transcription start site region 157909
Tssr157910 19 6980420 to 6980481 61 - TSS region transcription start site region 157910
Gm41803 19 6980528 to 6984168 3640 + lncRNA gene predicted gene, 41803
Tssr5426 19 6980582 to 6980614 32 + TSS region transcription start site region 5426
Tssr154717 19 6980621 to 6980638 17 + TSS region transcription start site region 154717
Vegfb 19 6982473 to 6987651 5178 - protein coding gene vascular endothelial growth factor B
Tssr157911 19 6985439 to 6985466 27 - TSS region transcription start site region 157911
Tssr154718 19 6986018 to 6986067 49 + TSS region transcription start site region 154718
Cpgi10539 19 6987030 to 6988290 1260 CpG island CpG island 10539
Tssr157912 19 6987413 to 6987446 33 - TSS region transcription start site region 157912
Tssr157913 19 6987460 to 6987517 57 - TSS region transcription start site region 157913
Tssr157914 19 6987521 to 6987534 13 - TSS region transcription start site region 157914
Tssr157915 19 6987591 to 6987618 27 - TSS region transcription start site region 157915
Tssr157916 19 6987621 to 6987764 143 - TSS region transcription start site region 157916
Dnajc4 19 6987911 to 6992503 4592 - protein coding gene DnaJ heat shock protein family (Hsp40) member C4
Cpgi10540 19 6992139 to 6992888 749 CpG island CpG island 10540
Tssr157917 19 6992478 to 6992524 46 - TSS region transcription start site region 157917
Tssr157918 19 6992570 to 6992594 24 - TSS region transcription start site region 157918
Gm35838 19 6992674 to 6993046 372 + lncRNA gene predicted gene, 35838
Nudt22 19 6993019 to 6996115 3096 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 22
Cpgi10541 19 6996015 to 6996366 351 CpG island CpG island 10541
Tssr157919 19 6996025 to 6996096 71 - TSS region transcription start site region 157919
Tssr154719 19 6996114 to 6996136 22 + TSS region transcription start site region 154719
Trpt1 19 6996131 to 6999044 2913 + protein coding gene tRNA phosphotransferase 1
Tssr154720 19 6996143 to 6996207 64 + TSS region transcription start site region 154720
Tssr154721 19 6996212 to 6996232 20 + TSS region transcription start site region 154721
Fermt3 19 6998958 to 7019469 20511 - protein coding gene fermitin family member 3
Tssr157920 19 6999430 to 6999441 11 - TSS region transcription start site region 157920
Tssr157921 19 7002268 to 7002270 2 - TSS region transcription start site region 157921
Tssr157922 19 7014150 to 7014213 63 - TSS region transcription start site region 157922
Tssr154722 19 7014351 to 7014399 48 + TSS region transcription start site region 154722
Tssr154723 19 7017910 to 7017930 20 + TSS region transcription start site region 154723
Tssr154724 19 7017961 to 7017972 11 + TSS region transcription start site region 154724
Tssr154725 19 7018309 to 7018333 24 + TSS region transcription start site region 154725
Tssr154726 19 7018692 to 7018731 39 + TSS region transcription start site region 154726
Tssr154727 19 7018752 to 7018769 17 + TSS region transcription start site region 154727
Tssr154728 19 7018784 to 7018797 13 + TSS region transcription start site region 154728
Tssr154729 19 7018815 to 7018827 12 + TSS region transcription start site region 154729
Tssr157923 19 7019328 to 7019339 11 - TSS region transcription start site region 157923
Tssr157924 19 7019340 to 7019415 75 - TSS region transcription start site region 157924
Tssr157925 19 7019423 to 7019463 40 - TSS region transcription start site region 157925
Stip1 19 7020696 to 7040026 19330 - protein coding gene stress-induced phosphoprotein 1
Tssr157926 19 7020938 to 7020961 23 - TSS region transcription start site region 157926
Tssr157927 19 7021093 to 7021104 11 - TSS region transcription start site region 157927
Tssr154730 19 7025638 to 7025652 14 + TSS region transcription start site region 154730
Tssr157928 19 7028979 to 7028991 12 - TSS region transcription start site region 157928
Tssr157929 19 7032548 to 7032577 29 - TSS region transcription start site region 157929
Cpgi10542 19 7039190 to 7040796 1606 CpG island CpG island 10542
Tssr154731 19 7039526 to 7039538 12 + TSS region transcription start site region 154731
Tssr154732 19 7039592 to 7039608 16 + TSS region transcription start site region 154732
Tssr157930 19 7039902 to 7039925 23 - TSS region transcription start site region 157930
Tssr157931 19 7039931 to 7039980 49 - TSS region transcription start site region 157931
Tssr157932 19 7039987 to 7039994 7 - TSS region transcription start site region 157932
Cpgi10543 19 7056360 to 7057572 1212 CpG island CpG island 10543
Tssr154733 19 7056731 to 7056773 42 + TSS region transcription start site region 154733
Macrod1 19 7056768 to 7198061 141293 + protein coding gene MACRO domain containing 1
Tssr154734 19 7056781 to 7056809 28 + TSS region transcription start site region 154734
Tssr154735 19 7056867 to 7056933 66 + TSS region transcription start site region 154735
Tssr154736 19 7056949 to 7056950 1 + TSS region transcription start site region 154736
Cpgi10544 19 7057633 to 7057934 301 CpG island CpG island 10544
5730409K12Rik 19 7084710 to 7090741 6031 + unclassified gene RIKEN cDNA 5730409K12 gene
Tssr157933 19 7089603 to 7089606 3 - TSS region transcription start site region 157933
Tssr157934 19 7090749 to 7090752 3 - TSS region transcription start site region 157934
Flrt1 19 7092014 to 7105729 13715 - protein coding gene fibronectin leucine rich transmembrane protein 1
Tssr157935 19 7094861 to 7094866 5 - TSS region transcription start site region 157935
D19Mit94 19 7120593 to 7120693 100 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 94
Gm38621 19 7131506 to 7136039 4533 + lncRNA gene predicted gene, 38621
Cpgi10545 19 7143731 to 7144383 652 CpG island CpG island 10545
Cpgi10546 19 7164791 to 7166645 1854 CpG island CpG island 10546
Tssr157936 19 7165991 to 7166099 108 - TSS region transcription start site region 157936
Cpgi10547 19 7182527 to 7182806 279 CpG island CpG island 10547
Cpgi10548 19 7196105 to 7196946 841 CpG island CpG island 10548
Otub1 19 7198206 to 7206284 8078 - protein coding gene OTU domain, ubiquitin aldehyde binding 1
Tssr157937 19 7198928 to 7198935 7 - TSS region transcription start site region 157937
Tssr157938 19 7199985 to 7200002 17 - TSS region transcription start site region 157938
Tssr157939 19 7202338 to 7202356 18 - TSS region transcription start site region 157939
Cpgi10549 19 7205607 to 7206794 1187 CpG island CpG island 10549
Tssr157940 19 7206232 to 7206242 10 - TSS region transcription start site region 157940
Tssr157941 19 7206261 to 7206301 40 - TSS region transcription start site region 157941
Tssr154737 19 7206683 to 7206713 30 + TSS region transcription start site region 154737