Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:6853353-7014752

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc88b 19 6844623 to 6858211 13588 - protein coding gene coiled-coil domain containing 88B
Tssr157871 19 6853639 to 6853665 26 - TSS region transcription start site region 157871
Cpgi10527 19 6855313 to 6855775 462 CpG island CpG island 10527
Tssr157872 19 6857481 to 6857504 23 - TSS region transcription start site region 157872
Tssr157873 19 6857515 to 6857541 26 - TSS region transcription start site region 157873
Tssr154679 19 6857624 to 6857636 12 + TSS region transcription start site region 154679
Tssr157874 19 6858173 to 6858178 5 - TSS region transcription start site region 157874
Tssr157875 19 6858179 to 6858218 39 - TSS region transcription start site region 157875
Tssr154680 19 6863675 to 6863687 12 + TSS region transcription start site region 154680
Tssr157876 19 6870675 to 6870698 23 - TSS region transcription start site region 157876
Tssr157877 19 6870737 to 6870761 24 - TSS region transcription start site region 157877
Tssr154681 19 6871125 to 6871138 13 + TSS region transcription start site region 154681
Tssr154682 19 6871207 to 6871221 14 + TSS region transcription start site region 154682
Tssr154683 19 6877300 to 6877305 5 + TSS region transcription start site region 154683
Tssr154684 19 6877798 to 6877802 4 + TSS region transcription start site region 154684
Tssr154685 19 6894284 to 6894300 16 + TSS region transcription start site region 154685
Tssr154686 19 6906698 to 6906711 13 + TSS region transcription start site region 154686
Prdx5 19 6906819 to 6909645 2826 - protein coding gene peroxiredoxin 5
Tssr157878 19 6906852 to 6906878 26 - TSS region transcription start site region 157878
Tssr157879 19 6906879 to 6906892 13 - TSS region transcription start site region 157879
Tssr154687 19 6906888 to 6906930 42 + TSS region transcription start site region 154687
Tssr157880 19 6906914 to 6906938 24 - TSS region transcription start site region 157880
Tssr157881 19 6907666 to 6907698 32 - TSS region transcription start site region 157881
Tssr157882 19 6907702 to 6907712 10 - TSS region transcription start site region 157882
Tssr157883 19 6907764 to 6907778 14 - TSS region transcription start site region 157883
Tssr154688 19 6907979 to 6907990 11 + TSS region transcription start site region 154688
Tssr157884 19 6908008 to 6908036 28 - TSS region transcription start site region 157884
Tssr157885 19 6908104 to 6908117 13 - TSS region transcription start site region 157885
Tssr157886 19 6908289 to 6908310 21 - TSS region transcription start site region 157886
Tssr157887 19 6908855 to 6908868 13 - TSS region transcription start site region 157887
Cpgi10528 19 6909275 to 6910720 1445 CpG island CpG island 10528
Tssr157888 19 6909564 to 6909596 32 - TSS region transcription start site region 157888
Tssr157889 19 6909599 to 6909626 27 - TSS region transcription start site region 157889
Tssr157890 19 6909633 to 6909691 58 - TSS region transcription start site region 157890
Tssr154689 19 6909692 to 6909721 29 + TSS region transcription start site region 154689
Trmt112 19 6909698 to 6911028 1330 + protein coding gene tRNA methyltransferase 11-2
Tssr154690 19 6909722 to 6909760 38 + TSS region transcription start site region 154690
Tssr154691 19 6909768 to 6909804 36 + TSS region transcription start site region 154691
Tssr154692 19 6909811 to 6909822 11 + TSS region transcription start site region 154692
Tssr157891 19 6909934 to 6910015 81 - TSS region transcription start site region 157891
Tssr157892 19 6910067 to 6910082 15 - TSS region transcription start site region 157892
Tssr157893 19 6910088 to 6910125 37 - TSS region transcription start site region 157893
Tssr154693 19 6910119 to 6910146 27 + TSS region transcription start site region 154693
Tssr157894 19 6910134 to 6910142 8 - TSS region transcription start site region 157894
Tssr154694 19 6910501 to 6910529 28 + TSS region transcription start site region 154694
Tssr154695 19 6910535 to 6910560 25 + TSS region transcription start site region 154695
Esrra 19 6910977 to 6921813 10836 - protein coding gene estrogen related receptor, alpha
Mir6990 19 6914196 to 6914286 90 - miRNA gene microRNA 6990
Cpgi10529 19 6920964 to 6922647 1683 CpG island CpG island 10529
Tssr157895 19 6921753 to 6921803 50 - TSS region transcription start site region 157895
Tssr157896 19 6921804 to 6921834 30 - TSS region transcription start site region 157896
Catsperz 19 6922426 to 6925380 2954 - protein coding gene cation channel sperm associated auxiliary subunit zeta
Cpgi10530 19 6924593 to 6925309 716 CpG island CpG island 10530
Tssr157897 19 6925311 to 6925321 10 - TSS region transcription start site region 157897
Tssr157898 19 6925330 to 6925366 36 - TSS region transcription start site region 157898
Tssr157899 19 6925367 to 6925381 14 - TSS region transcription start site region 157899
Kcnk4 19 6925710 to 6934515 8805 - protein coding gene potassium channel, subfamily K, member 4
Cpgi10531 19 6925832 to 6926412 580 CpG island CpG island 10531
Cpgi10532 19 6926891 to 6927235 344 CpG island CpG island 10532
Tssr154696 19 6927106 to 6927119 13 + TSS region transcription start site region 154696
Gm46646 19 6927166 to 6929518 2352 + lncRNA gene predicted gene, 46646
Tssr157900 19 6933270 to 6933281 11 - TSS region transcription start site region 157900
Cpgi10533 19 6933353 to 6934752 1399 CpG island CpG island 10533
Tssr157901 19 6934191 to 6934218 27 - TSS region transcription start site region 157901
Gpr137 19 6938069 to 6942450 4381 - protein coding gene G protein-coupled receptor 137
Cpgi10534 19 6940740 to 6942652 1912 CpG island CpG island 10534
Tssr157902 19 6941428 to 6941518 90 - TSS region transcription start site region 157902
Tssr157903 19 6941821 to 6941830 9 - TSS region transcription start site region 157903
Bad 19 6941861 to 6951898 10037 + protein coding gene BCL2-associated agonist of cell death
Tssr154697 19 6941875 to 6941890 15 + TSS region transcription start site region 154697
Tssr154698 19 6941901 to 6941932 31 + TSS region transcription start site region 154698
Tssr157904 19 6942406 to 6942443 37 - TSS region transcription start site region 157904
Tssr154699 19 6942543 to 6942584 41 + TSS region transcription start site region 154699
Tssr154700 19 6942593 to 6942607 14 + TSS region transcription start site region 154700
Tssr154701 19 6942623 to 6942638 15 + TSS region transcription start site region 154701
Gm19053 19 6945071 to 6945620 549 - pseudogene predicted gene, 19053
Cpgi10535 19 6950565 to 6952500 1935 CpG island CpG island 10535
Tssr154702 19 6950721 to 6950736 15 + TSS region transcription start site region 154702
Tssr154703 19 6950746 to 6950765 19 + TSS region transcription start site region 154703
Tssr157905 19 6951473 to 6951514 41 - TSS region transcription start site region 157905
Plcb3 19 6953714 to 6969759 16045 - protein coding gene phospholipase C, beta 3
Cpgi10536 19 6969048 to 6970529 1481 CpG island CpG island 10536
Tssr157906 19 6969732 to 6969743 11 - TSS region transcription start site region 157906
Tssr157907 19 6969746 to 6969808 62 - TSS region transcription start site region 157907
Cpgi10537 19 6974222 to 6975749 1527 CpG island CpG island 10537
Tssr154704 19 6974613 to 6974682 69 + TSS region transcription start site region 154704
Tssr154705 19 6974951 to 6975003 52 + TSS region transcription start site region 154705
Tssr154706 19 6975048 to 6975071 23 + TSS region transcription start site region 154706
Ppp1r14b 19 6975048 to 6977324 2276 + protein coding gene protein phosphatase 1, regulatory inhibitor subunit 14B
Tssr154707 19 6975076 to 6975104 28 + TSS region transcription start site region 154707
Tssr154708 19 6975111 to 6975118 7 + TSS region transcription start site region 154708
Tssr154709 19 6975122 to 6975125 3 + TSS region transcription start site region 154709
Tssr154710 19 6975138 to 6975158 20 + TSS region transcription start site region 154710
Tssr154711 19 6975212 to 6975231 19 + TSS region transcription start site region 154711
Tssr154712 19 6976373 to 6976384 11 + TSS region transcription start site region 154712
Tssr154713 19 6976415 to 6976453 38 + TSS region transcription start site region 154713
Tssr154714 19 6976456 to 6976466 10 + TSS region transcription start site region 154714
Tssr154715 19 6976474 to 6976497 23 + TSS region transcription start site region 154715
Tssr154716 19 6976500 to 6976524 24 + TSS region transcription start site region 154716
Fkbp2 19 6977741 to 6980461 2720 - protein coding gene FK506 binding protein 2
Tssr157908 19 6979135 to 6979159 24 - TSS region transcription start site region 157908
Cpgi10538 19 6979393 to 6980878 1485 CpG island CpG island 10538
Tssr157909 19 6979874 to 6979896 22 - TSS region transcription start site region 157909
Tssr157910 19 6980420 to 6980481 61 - TSS region transcription start site region 157910
Gm41803 19 6980528 to 6984168 3640 + lncRNA gene predicted gene, 41803
Tssr5426 19 6980582 to 6980614 32 + TSS region transcription start site region 5426
Tssr154717 19 6980621 to 6980638 17 + TSS region transcription start site region 154717
Vegfb 19 6982473 to 6987651 5178 - protein coding gene vascular endothelial growth factor B
Tssr157911 19 6985439 to 6985466 27 - TSS region transcription start site region 157911
Tssr154718 19 6986018 to 6986067 49 + TSS region transcription start site region 154718
Cpgi10539 19 6987030 to 6988290 1260 CpG island CpG island 10539
Tssr157912 19 6987413 to 6987446 33 - TSS region transcription start site region 157912
Tssr157913 19 6987460 to 6987517 57 - TSS region transcription start site region 157913
Tssr157914 19 6987521 to 6987534 13 - TSS region transcription start site region 157914
Tssr157915 19 6987591 to 6987618 27 - TSS region transcription start site region 157915
Tssr157916 19 6987621 to 6987764 143 - TSS region transcription start site region 157916
Dnajc4 19 6987911 to 6992503 4592 - protein coding gene DnaJ heat shock protein family (Hsp40) member C4
Cpgi10540 19 6992139 to 6992888 749 CpG island CpG island 10540
Tssr157917 19 6992478 to 6992524 46 - TSS region transcription start site region 157917
Tssr157918 19 6992570 to 6992594 24 - TSS region transcription start site region 157918
Gm35838 19 6992674 to 6993046 372 + lncRNA gene predicted gene, 35838
Nudt22 19 6993019 to 6996115 3096 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 22
Cpgi10541 19 6996015 to 6996366 351 CpG island CpG island 10541
Tssr157919 19 6996025 to 6996096 71 - TSS region transcription start site region 157919
Tssr154719 19 6996114 to 6996136 22 + TSS region transcription start site region 154719
Trpt1 19 6996131 to 6999044 2913 + protein coding gene tRNA phosphotransferase 1
Tssr154720 19 6996143 to 6996207 64 + TSS region transcription start site region 154720
Tssr154721 19 6996212 to 6996232 20 + TSS region transcription start site region 154721
Fermt3 19 6998958 to 7019469 20511 - protein coding gene fermitin family member 3
Tssr157920 19 6999430 to 6999441 11 - TSS region transcription start site region 157920
Tssr157921 19 7002268 to 7002270 2 - TSS region transcription start site region 157921
Tssr157922 19 7014150 to 7014213 63 - TSS region transcription start site region 157922
Tssr154722 19 7014351 to 7014399 48 + TSS region transcription start site region 154722