Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:6849934-6970015

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc88b 19 6844623 to 6858211 13588 - protein coding gene coiled-coil domain containing 88B
Tssr157870 19 6851101 to 6851108 7 - TSS region transcription start site region 157870
Tssr157871 19 6853639 to 6853665 26 - TSS region transcription start site region 157871
Cpgi10527 19 6855313 to 6855775 462 CpG island CpG island 10527
Tssr157872 19 6857481 to 6857504 23 - TSS region transcription start site region 157872
Tssr157873 19 6857515 to 6857541 26 - TSS region transcription start site region 157873
Tssr154679 19 6857624 to 6857636 12 + TSS region transcription start site region 154679
Tssr157874 19 6858173 to 6858178 5 - TSS region transcription start site region 157874
Tssr157875 19 6858179 to 6858218 39 - TSS region transcription start site region 157875
Tssr154680 19 6863675 to 6863687 12 + TSS region transcription start site region 154680
Tssr157876 19 6870675 to 6870698 23 - TSS region transcription start site region 157876
Tssr157877 19 6870737 to 6870761 24 - TSS region transcription start site region 157877
Tssr154681 19 6871125 to 6871138 13 + TSS region transcription start site region 154681
Tssr154682 19 6871207 to 6871221 14 + TSS region transcription start site region 154682
Tssr154683 19 6877300 to 6877305 5 + TSS region transcription start site region 154683
Tssr154684 19 6877798 to 6877802 4 + TSS region transcription start site region 154684
Tssr154685 19 6894284 to 6894300 16 + TSS region transcription start site region 154685
Tssr154686 19 6906698 to 6906711 13 + TSS region transcription start site region 154686
Prdx5 19 6906819 to 6909645 2826 - protein coding gene peroxiredoxin 5
Tssr157878 19 6906852 to 6906878 26 - TSS region transcription start site region 157878
Tssr157879 19 6906879 to 6906892 13 - TSS region transcription start site region 157879
Tssr154687 19 6906888 to 6906930 42 + TSS region transcription start site region 154687
Tssr157880 19 6906914 to 6906938 24 - TSS region transcription start site region 157880
Tssr157881 19 6907666 to 6907698 32 - TSS region transcription start site region 157881
Tssr157882 19 6907702 to 6907712 10 - TSS region transcription start site region 157882
Tssr157883 19 6907764 to 6907778 14 - TSS region transcription start site region 157883
Tssr154688 19 6907979 to 6907990 11 + TSS region transcription start site region 154688
Tssr157884 19 6908008 to 6908036 28 - TSS region transcription start site region 157884
Tssr157885 19 6908104 to 6908117 13 - TSS region transcription start site region 157885
Tssr157886 19 6908289 to 6908310 21 - TSS region transcription start site region 157886
Tssr157887 19 6908855 to 6908868 13 - TSS region transcription start site region 157887
Cpgi10528 19 6909275 to 6910720 1445 CpG island CpG island 10528
Tssr157888 19 6909564 to 6909596 32 - TSS region transcription start site region 157888
Tssr157889 19 6909599 to 6909626 27 - TSS region transcription start site region 157889
Tssr157890 19 6909633 to 6909691 58 - TSS region transcription start site region 157890
Tssr154689 19 6909692 to 6909721 29 + TSS region transcription start site region 154689
Trmt112 19 6909698 to 6911028 1330 + protein coding gene tRNA methyltransferase 11-2
Tssr154690 19 6909722 to 6909760 38 + TSS region transcription start site region 154690
Tssr154691 19 6909768 to 6909804 36 + TSS region transcription start site region 154691
Tssr154692 19 6909811 to 6909822 11 + TSS region transcription start site region 154692
Tssr157891 19 6909934 to 6910015 81 - TSS region transcription start site region 157891
Tssr157892 19 6910067 to 6910082 15 - TSS region transcription start site region 157892
Tssr157893 19 6910088 to 6910125 37 - TSS region transcription start site region 157893
Tssr154693 19 6910119 to 6910146 27 + TSS region transcription start site region 154693
Tssr157894 19 6910134 to 6910142 8 - TSS region transcription start site region 157894
Tssr154694 19 6910501 to 6910529 28 + TSS region transcription start site region 154694
Tssr154695 19 6910535 to 6910560 25 + TSS region transcription start site region 154695
Esrra 19 6910977 to 6921813 10836 - protein coding gene estrogen related receptor, alpha
Mir6990 19 6914196 to 6914286 90 - miRNA gene microRNA 6990
Cpgi10529 19 6920964 to 6922647 1683 CpG island CpG island 10529
Tssr157895 19 6921753 to 6921803 50 - TSS region transcription start site region 157895
Tssr157896 19 6921804 to 6921834 30 - TSS region transcription start site region 157896
Catsperz 19 6922426 to 6925380 2954 - protein coding gene cation channel sperm associated auxiliary subunit zeta
Cpgi10530 19 6924593 to 6925309 716 CpG island CpG island 10530
Tssr157897 19 6925311 to 6925321 10 - TSS region transcription start site region 157897
Tssr157898 19 6925330 to 6925366 36 - TSS region transcription start site region 157898
Tssr157899 19 6925367 to 6925381 14 - TSS region transcription start site region 157899
Kcnk4 19 6925710 to 6934515 8805 - protein coding gene potassium channel, subfamily K, member 4
Cpgi10531 19 6925832 to 6926412 580 CpG island CpG island 10531
Cpgi10532 19 6926891 to 6927235 344 CpG island CpG island 10532
Tssr154696 19 6927106 to 6927119 13 + TSS region transcription start site region 154696
Gm46646 19 6927166 to 6929518 2352 + lncRNA gene predicted gene, 46646
Tssr157900 19 6933270 to 6933281 11 - TSS region transcription start site region 157900
Cpgi10533 19 6933353 to 6934752 1399 CpG island CpG island 10533
Tssr157901 19 6934191 to 6934218 27 - TSS region transcription start site region 157901
Gpr137 19 6938069 to 6942450 4381 - protein coding gene G protein-coupled receptor 137
Cpgi10534 19 6940740 to 6942652 1912 CpG island CpG island 10534
Tssr157902 19 6941428 to 6941518 90 - TSS region transcription start site region 157902
Tssr157903 19 6941821 to 6941830 9 - TSS region transcription start site region 157903
Bad 19 6941861 to 6951898 10037 + protein coding gene BCL2-associated agonist of cell death
Tssr154697 19 6941875 to 6941890 15 + TSS region transcription start site region 154697
Tssr154698 19 6941901 to 6941932 31 + TSS region transcription start site region 154698
Tssr157904 19 6942406 to 6942443 37 - TSS region transcription start site region 157904
Tssr154699 19 6942543 to 6942584 41 + TSS region transcription start site region 154699
Tssr154700 19 6942593 to 6942607 14 + TSS region transcription start site region 154700
Tssr154701 19 6942623 to 6942638 15 + TSS region transcription start site region 154701
Gm19053 19 6945071 to 6945620 549 - pseudogene predicted gene, 19053
Cpgi10535 19 6950565 to 6952500 1935 CpG island CpG island 10535
Tssr154702 19 6950721 to 6950736 15 + TSS region transcription start site region 154702
Tssr154703 19 6950746 to 6950765 19 + TSS region transcription start site region 154703
Tssr157905 19 6951473 to 6951514 41 - TSS region transcription start site region 157905
Plcb3 19 6953714 to 6969759 16045 - protein coding gene phospholipase C, beta 3
Cpgi10536 19 6969048 to 6970529 1481 CpG island CpG island 10536
Tssr157906 19 6969732 to 6969743 11 - TSS region transcription start site region 157906
Tssr157907 19 6969746 to 6969808 62 - TSS region transcription start site region 157907