Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:6778639-6928665

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rps6ka4 19 6829085 to 6840601 11516 - protein coding gene ribosomal protein S6 kinase, polypeptide 4
Mir5046 19 6829886 to 6829944 58 - miRNA gene microRNA 5046
Cpgi10524 19 6829919 to 6831670 1751 CpG island CpG island 10524
Cpgi10525 19 6839338 to 6841022 1684 CpG island CpG island 10525
Tssr157867 19 6840567 to 6840582 15 - TSS region transcription start site region 157867
Tssr157868 19 6840590 to 6840644 54 - TSS region transcription start site region 157868
Tssr157869 19 6840861 to 6840878 17 - TSS region transcription start site region 157869
Ccdc88b 19 6844623 to 6858211 13588 - protein coding gene coiled-coil domain containing 88B
Cpgi10526 19 6847936 to 6848644 708 CpG island CpG island 10526
Tssr157870 19 6851101 to 6851108 7 - TSS region transcription start site region 157870
Tssr157871 19 6853639 to 6853665 26 - TSS region transcription start site region 157871
Cpgi10527 19 6855313 to 6855775 462 CpG island CpG island 10527
Tssr157872 19 6857481 to 6857504 23 - TSS region transcription start site region 157872
Tssr157873 19 6857515 to 6857541 26 - TSS region transcription start site region 157873
Tssr154679 19 6857624 to 6857636 12 + TSS region transcription start site region 154679
Tssr157874 19 6858173 to 6858178 5 - TSS region transcription start site region 157874
Tssr157875 19 6858179 to 6858218 39 - TSS region transcription start site region 157875
Tssr154680 19 6863675 to 6863687 12 + TSS region transcription start site region 154680
Tssr157876 19 6870675 to 6870698 23 - TSS region transcription start site region 157876
Tssr157877 19 6870737 to 6870761 24 - TSS region transcription start site region 157877
Tssr154681 19 6871125 to 6871138 13 + TSS region transcription start site region 154681
Tssr154682 19 6871207 to 6871221 14 + TSS region transcription start site region 154682
Tssr154683 19 6877300 to 6877305 5 + TSS region transcription start site region 154683
Tssr154684 19 6877798 to 6877802 4 + TSS region transcription start site region 154684
Tssr154685 19 6894284 to 6894300 16 + TSS region transcription start site region 154685
Tssr154686 19 6906698 to 6906711 13 + TSS region transcription start site region 154686
Prdx5 19 6906819 to 6909645 2826 - protein coding gene peroxiredoxin 5
Tssr157878 19 6906852 to 6906878 26 - TSS region transcription start site region 157878
Tssr157879 19 6906879 to 6906892 13 - TSS region transcription start site region 157879
Tssr154687 19 6906888 to 6906930 42 + TSS region transcription start site region 154687
Tssr157880 19 6906914 to 6906938 24 - TSS region transcription start site region 157880
Tssr157881 19 6907666 to 6907698 32 - TSS region transcription start site region 157881
Tssr157882 19 6907702 to 6907712 10 - TSS region transcription start site region 157882
Tssr157883 19 6907764 to 6907778 14 - TSS region transcription start site region 157883
Tssr154688 19 6907979 to 6907990 11 + TSS region transcription start site region 154688
Tssr157884 19 6908008 to 6908036 28 - TSS region transcription start site region 157884
Tssr157885 19 6908104 to 6908117 13 - TSS region transcription start site region 157885
Tssr157886 19 6908289 to 6908310 21 - TSS region transcription start site region 157886
Tssr157887 19 6908855 to 6908868 13 - TSS region transcription start site region 157887
Cpgi10528 19 6909275 to 6910720 1445 CpG island CpG island 10528
Tssr157888 19 6909564 to 6909596 32 - TSS region transcription start site region 157888
Tssr157889 19 6909599 to 6909626 27 - TSS region transcription start site region 157889
Tssr157890 19 6909633 to 6909691 58 - TSS region transcription start site region 157890
Tssr154689 19 6909692 to 6909721 29 + TSS region transcription start site region 154689
Trmt112 19 6909698 to 6911028 1330 + protein coding gene tRNA methyltransferase 11-2
Tssr154690 19 6909722 to 6909760 38 + TSS region transcription start site region 154690
Tssr154691 19 6909768 to 6909804 36 + TSS region transcription start site region 154691
Tssr154692 19 6909811 to 6909822 11 + TSS region transcription start site region 154692
Tssr157891 19 6909934 to 6910015 81 - TSS region transcription start site region 157891
Tssr157892 19 6910067 to 6910082 15 - TSS region transcription start site region 157892
Tssr157893 19 6910088 to 6910125 37 - TSS region transcription start site region 157893
Tssr154693 19 6910119 to 6910146 27 + TSS region transcription start site region 154693
Tssr157894 19 6910134 to 6910142 8 - TSS region transcription start site region 157894
Tssr154694 19 6910501 to 6910529 28 + TSS region transcription start site region 154694
Tssr154695 19 6910535 to 6910560 25 + TSS region transcription start site region 154695
Esrra 19 6910977 to 6921813 10836 - protein coding gene estrogen related receptor, alpha
Mir6990 19 6914196 to 6914286 90 - miRNA gene microRNA 6990
Cpgi10529 19 6920964 to 6922647 1683 CpG island CpG island 10529
Tssr157895 19 6921753 to 6921803 50 - TSS region transcription start site region 157895
Tssr157896 19 6921804 to 6921834 30 - TSS region transcription start site region 157896
Catsperz 19 6922426 to 6925380 2954 - protein coding gene cation channel sperm associated auxiliary subunit zeta
Cpgi10530 19 6924593 to 6925309 716 CpG island CpG island 10530
Tssr157897 19 6925311 to 6925321 10 - TSS region transcription start site region 157897
Tssr157898 19 6925330 to 6925366 36 - TSS region transcription start site region 157898
Tssr157899 19 6925367 to 6925381 14 - TSS region transcription start site region 157899
Kcnk4 19 6925710 to 6934515 8805 - protein coding gene potassium channel, subfamily K, member 4
Cpgi10531 19 6925832 to 6926412 580 CpG island CpG island 10531
Cpgi10532 19 6926891 to 6927235 344 CpG island CpG island 10532
Tssr154696 19 6927106 to 6927119 13 + TSS region transcription start site region 154696
Gm46646 19 6927166 to 6929518 2352 + lncRNA gene predicted gene, 46646