Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:6400687-6892172

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rasgrp2 19 6399340 to 6415216 15876 + protein coding gene RAS, guanyl releasing protein 2
Cpgi10514 19 6401405 to 6401898 493 CpG island CpG island 10514
Tssr154656 19 6401675 to 6401715 40 + TSS region transcription start site region 154656
Cpgi10515 19 6404675 to 6405112 437 CpG island CpG island 10515
Tssr154657 19 6408399 to 6408410 11 + TSS region transcription start site region 154657
Gm14965 19 6409400 to 6418606 9206 - lncRNA gene predicted gene 14965
Tssr154658 19 6413071 to 6413087 16 + TSS region transcription start site region 154658
Cpgi10516 19 6413076 to 6413318 242 CpG island CpG island 10516
Tssr154659 19 6413105 to 6413130 25 + TSS region transcription start site region 154659
Cpgi10517 19 6418245 to 6419355 1110 CpG island CpG island 10517
Tssr154660 19 6418733 to 6418810 77 + TSS region transcription start site region 154660
Nrxn2 19 6418738 to 6533217 114479 + protein coding gene neurexin II
Cpgi10518 19 6420613 to 6420807 194 CpG island CpG island 10518
Cpgi10519 19 6427613 to 6429221 1608 CpG island CpG island 10519
Cpgi10520 19 6497095 to 6498940 1845 CpG island CpG island 10520
Tssr154661 19 6497412 to 6497449 37 + TSS region transcription start site region 154661
Tssr154662 19 6497452 to 6497487 35 + TSS region transcription start site region 154662
Tssr154663 19 6497587 to 6497666 79 + TSS region transcription start site region 154663
Tssr154664 19 6497674 to 6497687 13 + TSS region transcription start site region 154664
Tssr154665 19 6497724 to 6497744 20 + TSS region transcription start site region 154665
Tssr154666 19 6497758 to 6497764 6 + TSS region transcription start site region 154666
Tssr154667 19 6497772 to 6497845 73 + TSS region transcription start site region 154667
Tssr154668 19 6497877 to 6497921 44 + TSS region transcription start site region 154668
Tssr154669 19 6497932 to 6497943 11 + TSS region transcription start site region 154669
Tssr154670 19 6497949 to 6497979 30 + TSS region transcription start site region 154670
Tssr154671 19 6498024 to 6498037 13 + TSS region transcription start site region 154671
Tssr154672 19 6498081 to 6498089 8 + TSS region transcription start site region 154672
Tssr154673 19 6498166 to 6498173 7 + TSS region transcription start site region 154673
Cpgi10521 19 6502063 to 6502808 745 CpG island CpG island 10521
Gm14964 19 6530711 to 6532011 1300 - antisense lncRNA gene predicted gene 14964
Cpgi10522 19 6531052 to 6532366 1314 CpG island CpG island 10522
Tssr154674 19 6531146 to 6531229 83 + TSS region transcription start site region 154674
Tssr5425 19 6531606 to 6531617 11 + TSS region transcription start site region 5425
Tssr157855 19 6531979 to 6531994 15 - TSS region transcription start site region 157855
Tssr157856 19 6532012 to 6532023 11 - TSS region transcription start site region 157856
Tssr157857 19 6532110 to 6532151 41 - TSS region transcription start site region 157857
Tssr154675 19 6532230 to 6532240 10 + TSS region transcription start site region 154675
Tssr157858 19 6532264 to 6532286 22 - TSS region transcription start site region 157858
Tssr157859 19 6532345 to 6532367 22 - TSS region transcription start site region 157859
Tssr157860 19 6532372 to 6532391 19 - TSS region transcription start site region 157860
Tssr154676 19 6532485 to 6532498 13 + TSS region transcription start site region 154676
Slc22a12 19 6535845 to 6543019 7174 - protein coding gene solute carrier family 22 (organic anion/cation transporter), member 12
Tssr157861 19 6541665 to 6541670 5 - TSS region transcription start site region 157861
Tssr157862 19 6542989 to 6543014 25 - TSS region transcription start site region 157862
Tssr157863 19 6543019 to 6543039 20 - TSS region transcription start site region 157863
Tssr157864 19 6543064 to 6543075 11 - TSS region transcription start site region 157864
Tssr157865 19 6543082 to 6543088 6 - TSS region transcription start site region 157865
Gm14967 19 6543771 to 6544899 1128 - antisense lncRNA gene predicted gene 14967
Cpgi10523 19 6549566 to 6549721 155 CpG island CpG island 10523
D19Mit77 19 6556525 to 6556656 131 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 77
Gm26460 19 6563780 to 6563905 125 + miRNA gene predicted gene, 26460
Gm32245 19 6567126 to 6578552 11426 + lncRNA gene predicted gene, 32245
Tssr157866 19 6571577 to 6571586 9 - TSS region transcription start site region 157866
Hmgb1-ps4 19 6592602 to 6593236 634 - pseudogene high mobility group box 1, pseudogene 4
2410152P15Rik 19 6617671 to 6674548 56877 - unclassified gene RIKEN cDNA 2410152P15 gene
Tssr154677 19 6643711 to 6643713 2 + TSS region transcription start site region 154677
Tssr154678 19 6645146 to 6645151 5 + TSS region transcription start site region 154678
Gm14968 19 6645687 to 6647172 1485 + lincRNA gene predicted gene 14968
Rps6ka4 19 6829085 to 6840601 11516 - protein coding gene ribosomal protein S6 kinase, polypeptide 4
Mir5046 19 6829886 to 6829944 58 - miRNA gene microRNA 5046
Cpgi10524 19 6829919 to 6831670 1751 CpG island CpG island 10524
Cpgi10525 19 6839338 to 6841022 1684 CpG island CpG island 10525
Tssr157867 19 6840567 to 6840582 15 - TSS region transcription start site region 157867
Tssr157868 19 6840590 to 6840644 54 - TSS region transcription start site region 157868
Tssr157869 19 6840861 to 6840878 17 - TSS region transcription start site region 157869
Ccdc88b 19 6844623 to 6858211 13588 - protein coding gene coiled-coil domain containing 88B
Cpgi10526 19 6847936 to 6848644 708 CpG island CpG island 10526
Tssr157870 19 6851101 to 6851108 7 - TSS region transcription start site region 157870
Tssr157871 19 6853639 to 6853665 26 - TSS region transcription start site region 157871
Cpgi10527 19 6855313 to 6855775 462 CpG island CpG island 10527
Tssr157872 19 6857481 to 6857504 23 - TSS region transcription start site region 157872
Tssr157873 19 6857515 to 6857541 26 - TSS region transcription start site region 157873
Tssr154679 19 6857624 to 6857636 12 + TSS region transcription start site region 154679
Tssr157874 19 6858173 to 6858178 5 - TSS region transcription start site region 157874
Tssr157875 19 6858179 to 6858218 39 - TSS region transcription start site region 157875
Tssr154680 19 6863675 to 6863687 12 + TSS region transcription start site region 154680
Tssr157876 19 6870675 to 6870698 23 - TSS region transcription start site region 157876
Tssr157877 19 6870737 to 6870761 24 - TSS region transcription start site region 157877
Tssr154681 19 6871125 to 6871138 13 + TSS region transcription start site region 154681
Tssr154682 19 6871207 to 6871221 14 + TSS region transcription start site region 154682
Tssr154683 19 6877300 to 6877305 5 + TSS region transcription start site region 154683
Tssr154684 19 6877798 to 6877802 4 + TSS region transcription start site region 154684