Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:6399085-7270601

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282 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi10513 19 6398573 to 6400659 2086 CpG island CpG island 10513
Rasgrp2 19 6399340 to 6415216 15876 + protein coding gene RAS, guanyl releasing protein 2
Tssr154652 19 6399835 to 6399855 20 + TSS region transcription start site region 154652
Tssr154653 19 6399857 to 6399890 33 + TSS region transcription start site region 154653
Tssr154654 19 6400523 to 6400559 36 + TSS region transcription start site region 154654
Tssr154655 19 6400611 to 6400622 11 + TSS region transcription start site region 154655
Cpgi10514 19 6401405 to 6401898 493 CpG island CpG island 10514
Tssr154656 19 6401675 to 6401715 40 + TSS region transcription start site region 154656
Cpgi10515 19 6404675 to 6405112 437 CpG island CpG island 10515
Tssr154657 19 6408399 to 6408410 11 + TSS region transcription start site region 154657
Gm14965 19 6409400 to 6418606 9206 - lncRNA gene predicted gene 14965
Tssr154658 19 6413071 to 6413087 16 + TSS region transcription start site region 154658
Cpgi10516 19 6413076 to 6413318 242 CpG island CpG island 10516
Tssr154659 19 6413105 to 6413130 25 + TSS region transcription start site region 154659
Cpgi10517 19 6418245 to 6419355 1110 CpG island CpG island 10517
Tssr154660 19 6418733 to 6418810 77 + TSS region transcription start site region 154660
Nrxn2 19 6418738 to 6533217 114479 + protein coding gene neurexin II
Cpgi10518 19 6420613 to 6420807 194 CpG island CpG island 10518
Cpgi10519 19 6427613 to 6429221 1608 CpG island CpG island 10519
Cpgi10520 19 6497095 to 6498940 1845 CpG island CpG island 10520
Tssr154661 19 6497412 to 6497449 37 + TSS region transcription start site region 154661
Tssr154662 19 6497452 to 6497487 35 + TSS region transcription start site region 154662
Tssr154663 19 6497587 to 6497666 79 + TSS region transcription start site region 154663
Tssr154664 19 6497674 to 6497687 13 + TSS region transcription start site region 154664
Tssr154665 19 6497724 to 6497744 20 + TSS region transcription start site region 154665
Tssr154666 19 6497758 to 6497764 6 + TSS region transcription start site region 154666
Tssr154667 19 6497772 to 6497845 73 + TSS region transcription start site region 154667
Tssr154668 19 6497877 to 6497921 44 + TSS region transcription start site region 154668
Tssr154669 19 6497932 to 6497943 11 + TSS region transcription start site region 154669
Tssr154670 19 6497949 to 6497979 30 + TSS region transcription start site region 154670
Tssr154671 19 6498024 to 6498037 13 + TSS region transcription start site region 154671
Tssr154672 19 6498081 to 6498089 8 + TSS region transcription start site region 154672
Tssr154673 19 6498166 to 6498173 7 + TSS region transcription start site region 154673
Cpgi10521 19 6502063 to 6502808 745 CpG island CpG island 10521
Gm14964 19 6530711 to 6532011 1300 - antisense lncRNA gene predicted gene 14964
Cpgi10522 19 6531052 to 6532366 1314 CpG island CpG island 10522
Tssr154674 19 6531146 to 6531229 83 + TSS region transcription start site region 154674
Tssr5425 19 6531606 to 6531617 11 + TSS region transcription start site region 5425
Tssr157855 19 6531979 to 6531994 15 - TSS region transcription start site region 157855
Tssr157856 19 6532012 to 6532023 11 - TSS region transcription start site region 157856
Tssr157857 19 6532110 to 6532151 41 - TSS region transcription start site region 157857
Tssr154675 19 6532230 to 6532240 10 + TSS region transcription start site region 154675
Tssr157858 19 6532264 to 6532286 22 - TSS region transcription start site region 157858
Tssr157859 19 6532345 to 6532367 22 - TSS region transcription start site region 157859
Tssr157860 19 6532372 to 6532391 19 - TSS region transcription start site region 157860
Tssr154676 19 6532485 to 6532498 13 + TSS region transcription start site region 154676
Slc22a12 19 6535845 to 6543019 7174 - protein coding gene solute carrier family 22 (organic anion/cation transporter), member 12
Tssr157861 19 6541665 to 6541670 5 - TSS region transcription start site region 157861
Tssr157862 19 6542989 to 6543014 25 - TSS region transcription start site region 157862
Tssr157863 19 6543019 to 6543039 20 - TSS region transcription start site region 157863
Tssr157864 19 6543064 to 6543075 11 - TSS region transcription start site region 157864
Tssr157865 19 6543082 to 6543088 6 - TSS region transcription start site region 157865
Gm14967 19 6543771 to 6544899 1128 - antisense lncRNA gene predicted gene 14967
Cpgi10523 19 6549566 to 6549721 155 CpG island CpG island 10523
D19Mit77 19 6556525 to 6556656 131 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 77
Gm26460 19 6563780 to 6563905 125 + miRNA gene predicted gene, 26460
Gm32245 19 6567126 to 6578552 11426 + lncRNA gene predicted gene, 32245
Tssr157866 19 6571577 to 6571586 9 - TSS region transcription start site region 157866
Hmgb1-ps4 19 6592602 to 6593236 634 - pseudogene high mobility group box 1, pseudogene 4
2410152P15Rik 19 6617671 to 6674548 56877 - unclassified gene RIKEN cDNA 2410152P15 gene
Tssr154677 19 6643711 to 6643713 2 + TSS region transcription start site region 154677
Tssr154678 19 6645146 to 6645151 5 + TSS region transcription start site region 154678
Gm14968 19 6645687 to 6647172 1485 + lincRNA gene predicted gene 14968
Rps6ka4 19 6829085 to 6840601 11516 - protein coding gene ribosomal protein S6 kinase, polypeptide 4
Mir5046 19 6829886 to 6829944 58 - miRNA gene microRNA 5046
Cpgi10524 19 6829919 to 6831670 1751 CpG island CpG island 10524
Cpgi10525 19 6839338 to 6841022 1684 CpG island CpG island 10525
Tssr157867 19 6840567 to 6840582 15 - TSS region transcription start site region 157867
Tssr157868 19 6840590 to 6840644 54 - TSS region transcription start site region 157868
Tssr157869 19 6840861 to 6840878 17 - TSS region transcription start site region 157869
Ccdc88b 19 6844623 to 6858211 13588 - protein coding gene coiled-coil domain containing 88B
Cpgi10526 19 6847936 to 6848644 708 CpG island CpG island 10526
Tssr157870 19 6851101 to 6851108 7 - TSS region transcription start site region 157870
Tssr157871 19 6853639 to 6853665 26 - TSS region transcription start site region 157871
Cpgi10527 19 6855313 to 6855775 462 CpG island CpG island 10527
Tssr157872 19 6857481 to 6857504 23 - TSS region transcription start site region 157872
Tssr157873 19 6857515 to 6857541 26 - TSS region transcription start site region 157873
Tssr154679 19 6857624 to 6857636 12 + TSS region transcription start site region 154679
Tssr157874 19 6858173 to 6858178 5 - TSS region transcription start site region 157874
Tssr157875 19 6858179 to 6858218 39 - TSS region transcription start site region 157875
Tssr154680 19 6863675 to 6863687 12 + TSS region transcription start site region 154680
Tssr157876 19 6870675 to 6870698 23 - TSS region transcription start site region 157876
Tssr157877 19 6870737 to 6870761 24 - TSS region transcription start site region 157877
Tssr154681 19 6871125 to 6871138 13 + TSS region transcription start site region 154681
Tssr154682 19 6871207 to 6871221 14 + TSS region transcription start site region 154682
Tssr154683 19 6877300 to 6877305 5 + TSS region transcription start site region 154683
Tssr154684 19 6877798 to 6877802 4 + TSS region transcription start site region 154684
Tssr154685 19 6894284 to 6894300 16 + TSS region transcription start site region 154685
Tssr154686 19 6906698 to 6906711 13 + TSS region transcription start site region 154686
Prdx5 19 6906819 to 6909645 2826 - protein coding gene peroxiredoxin 5
Tssr157878 19 6906852 to 6906878 26 - TSS region transcription start site region 157878
Tssr157879 19 6906879 to 6906892 13 - TSS region transcription start site region 157879
Tssr154687 19 6906888 to 6906930 42 + TSS region transcription start site region 154687
Tssr157880 19 6906914 to 6906938 24 - TSS region transcription start site region 157880
Tssr157881 19 6907666 to 6907698 32 - TSS region transcription start site region 157881
Tssr157882 19 6907702 to 6907712 10 - TSS region transcription start site region 157882
Tssr157883 19 6907764 to 6907778 14 - TSS region transcription start site region 157883
Tssr154688 19 6907979 to 6907990 11 + TSS region transcription start site region 154688
Tssr157884 19 6908008 to 6908036 28 - TSS region transcription start site region 157884
Tssr157885 19 6908104 to 6908117 13 - TSS region transcription start site region 157885
Tssr157886 19 6908289 to 6908310 21 - TSS region transcription start site region 157886
Tssr157887 19 6908855 to 6908868 13 - TSS region transcription start site region 157887
Cpgi10528 19 6909275 to 6910720 1445 CpG island CpG island 10528
Tssr157888 19 6909564 to 6909596 32 - TSS region transcription start site region 157888
Tssr157889 19 6909599 to 6909626 27 - TSS region transcription start site region 157889
Tssr157890 19 6909633 to 6909691 58 - TSS region transcription start site region 157890
Tssr154689 19 6909692 to 6909721 29 + TSS region transcription start site region 154689
Trmt112 19 6909698 to 6911028 1330 + protein coding gene tRNA methyltransferase 11-2
Tssr154690 19 6909722 to 6909760 38 + TSS region transcription start site region 154690
Tssr154691 19 6909768 to 6909804 36 + TSS region transcription start site region 154691
Tssr154692 19 6909811 to 6909822 11 + TSS region transcription start site region 154692
Tssr157891 19 6909934 to 6910015 81 - TSS region transcription start site region 157891
Tssr157892 19 6910067 to 6910082 15 - TSS region transcription start site region 157892
Tssr157893 19 6910088 to 6910125 37 - TSS region transcription start site region 157893
Tssr154693 19 6910119 to 6910146 27 + TSS region transcription start site region 154693
Tssr157894 19 6910134 to 6910142 8 - TSS region transcription start site region 157894
Tssr154694 19 6910501 to 6910529 28 + TSS region transcription start site region 154694
Tssr154695 19 6910535 to 6910560 25 + TSS region transcription start site region 154695
Esrra 19 6910977 to 6921813 10836 - protein coding gene estrogen related receptor, alpha
Mir6990 19 6914196 to 6914286 90 - miRNA gene microRNA 6990
Cpgi10529 19 6920964 to 6922647 1683 CpG island CpG island 10529
Tssr157895 19 6921753 to 6921803 50 - TSS region transcription start site region 157895
Tssr157896 19 6921804 to 6921834 30 - TSS region transcription start site region 157896
Catsperz 19 6922426 to 6925380 2954 - protein coding gene cation channel sperm associated auxiliary subunit zeta
Cpgi10530 19 6924593 to 6925309 716 CpG island CpG island 10530
Tssr157897 19 6925311 to 6925321 10 - TSS region transcription start site region 157897
Tssr157898 19 6925330 to 6925366 36 - TSS region transcription start site region 157898
Tssr157899 19 6925367 to 6925381 14 - TSS region transcription start site region 157899
Kcnk4 19 6925710 to 6934515 8805 - protein coding gene potassium channel, subfamily K, member 4
Cpgi10531 19 6925832 to 6926412 580 CpG island CpG island 10531
Cpgi10532 19 6926891 to 6927235 344 CpG island CpG island 10532
Tssr154696 19 6927106 to 6927119 13 + TSS region transcription start site region 154696
Gm46646 19 6927166 to 6929518 2352 + lncRNA gene predicted gene, 46646
Tssr157900 19 6933270 to 6933281 11 - TSS region transcription start site region 157900
Cpgi10533 19 6933353 to 6934752 1399 CpG island CpG island 10533
Tssr157901 19 6934191 to 6934218 27 - TSS region transcription start site region 157901
Gpr137 19 6938069 to 6942450 4381 - protein coding gene G protein-coupled receptor 137
Cpgi10534 19 6940740 to 6942652 1912 CpG island CpG island 10534
Tssr157902 19 6941428 to 6941518 90 - TSS region transcription start site region 157902
Tssr157903 19 6941821 to 6941830 9 - TSS region transcription start site region 157903
Bad 19 6941861 to 6951898 10037 + protein coding gene BCL2-associated agonist of cell death
Tssr154697 19 6941875 to 6941890 15 + TSS region transcription start site region 154697
Tssr154698 19 6941901 to 6941932 31 + TSS region transcription start site region 154698
Tssr157904 19 6942406 to 6942443 37 - TSS region transcription start site region 157904
Tssr154699 19 6942543 to 6942584 41 + TSS region transcription start site region 154699
Tssr154700 19 6942593 to 6942607 14 + TSS region transcription start site region 154700
Tssr154701 19 6942623 to 6942638 15 + TSS region transcription start site region 154701
Gm19053 19 6945071 to 6945620 549 - pseudogene predicted gene, 19053
Cpgi10535 19 6950565 to 6952500 1935 CpG island CpG island 10535
Tssr154702 19 6950721 to 6950736 15 + TSS region transcription start site region 154702
Tssr154703 19 6950746 to 6950765 19 + TSS region transcription start site region 154703
Tssr157905 19 6951473 to 6951514 41 - TSS region transcription start site region 157905
Plcb3 19 6953714 to 6969759 16045 - protein coding gene phospholipase C, beta 3
Cpgi10536 19 6969048 to 6970529 1481 CpG island CpG island 10536
Tssr157906 19 6969732 to 6969743 11 - TSS region transcription start site region 157906
Tssr157907 19 6969746 to 6969808 62 - TSS region transcription start site region 157907
Cpgi10537 19 6974222 to 6975749 1527 CpG island CpG island 10537
Tssr154704 19 6974613 to 6974682 69 + TSS region transcription start site region 154704
Tssr154705 19 6974951 to 6975003 52 + TSS region transcription start site region 154705
Ppp1r14b 19 6975048 to 6977324 2276 + protein coding gene protein phosphatase 1, regulatory inhibitor subunit 14B
Tssr154706 19 6975048 to 6975071 23 + TSS region transcription start site region 154706
Tssr154707 19 6975076 to 6975104 28 + TSS region transcription start site region 154707
Tssr154708 19 6975111 to 6975118 7 + TSS region transcription start site region 154708
Tssr154709 19 6975122 to 6975125 3 + TSS region transcription start site region 154709
Tssr154710 19 6975138 to 6975158 20 + TSS region transcription start site region 154710
Tssr154711 19 6975212 to 6975231 19 + TSS region transcription start site region 154711
Tssr154712 19 6976373 to 6976384 11 + TSS region transcription start site region 154712
Tssr154713 19 6976415 to 6976453 38 + TSS region transcription start site region 154713
Tssr154714 19 6976456 to 6976466 10 + TSS region transcription start site region 154714
Tssr154715 19 6976474 to 6976497 23 + TSS region transcription start site region 154715
Tssr154716 19 6976500 to 6976524 24 + TSS region transcription start site region 154716
Fkbp2 19 6977741 to 6980461 2720 - protein coding gene FK506 binding protein 2
Tssr157908 19 6979135 to 6979159 24 - TSS region transcription start site region 157908
Cpgi10538 19 6979393 to 6980878 1485 CpG island CpG island 10538
Tssr157909 19 6979874 to 6979896 22 - TSS region transcription start site region 157909
Tssr157910 19 6980420 to 6980481 61 - TSS region transcription start site region 157910
Gm41803 19 6980528 to 6984168 3640 + lncRNA gene predicted gene, 41803
Tssr5426 19 6980582 to 6980614 32 + TSS region transcription start site region 5426
Tssr154717 19 6980621 to 6980638 17 + TSS region transcription start site region 154717
Vegfb 19 6982473 to 6987651 5178 - protein coding gene vascular endothelial growth factor B
Tssr157911 19 6985439 to 6985466 27 - TSS region transcription start site region 157911
Tssr154718 19 6986018 to 6986067 49 + TSS region transcription start site region 154718
Cpgi10539 19 6987030 to 6988290 1260 CpG island CpG island 10539
Tssr157912 19 6987413 to 6987446 33 - TSS region transcription start site region 157912
Tssr157913 19 6987460 to 6987517 57 - TSS region transcription start site region 157913
Tssr157914 19 6987521 to 6987534 13 - TSS region transcription start site region 157914
Tssr157915 19 6987591 to 6987618 27 - TSS region transcription start site region 157915
Tssr157916 19 6987621 to 6987764 143 - TSS region transcription start site region 157916
Dnajc4 19 6987911 to 6992503 4592 - protein coding gene DnaJ heat shock protein family (Hsp40) member C4
Cpgi10540 19 6992139 to 6992888 749 CpG island CpG island 10540
Tssr157917 19 6992478 to 6992524 46 - TSS region transcription start site region 157917
Tssr157918 19 6992570 to 6992594 24 - TSS region transcription start site region 157918
Gm35838 19 6992674 to 6993046 372 + lncRNA gene predicted gene, 35838
Nudt22 19 6993019 to 6996115 3096 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 22
Cpgi10541 19 6996015 to 6996366 351 CpG island CpG island 10541
Tssr157919 19 6996025 to 6996096 71 - TSS region transcription start site region 157919
Tssr154719 19 6996114 to 6996136 22 + TSS region transcription start site region 154719
Trpt1 19 6996131 to 6999044 2913 + protein coding gene tRNA phosphotransferase 1
Tssr154720 19 6996143 to 6996207 64 + TSS region transcription start site region 154720
Tssr154721 19 6996212 to 6996232 20 + TSS region transcription start site region 154721