Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:6380146-6910151

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr154642 19 6384395 to 6384422 27 + TSS region transcription start site region 154642
Pygm 19 6384408 to 6398464 14056 + protein coding gene muscle glycogen phosphorylase
Tssr154643 19 6384453 to 6384456 3 + TSS region transcription start site region 154643
Tssr154644 19 6386034 to 6386056 22 + TSS region transcription start site region 154644
Tssr154645 19 6386411 to 6386427 16 + TSS region transcription start site region 154645
Cpgi10511 19 6388113 to 6388343 230 CpG island CpG island 10511
Tssr154646 19 6389540 to 6389555 15 + TSS region transcription start site region 154646
Cpgi10512 19 6389591 to 6390135 544 CpG island CpG island 10512
Tssr154647 19 6389793 to 6389804 11 + TSS region transcription start site region 154647
Tssr154648 19 6393709 to 6393729 20 + TSS region transcription start site region 154648
Tssr5423 19 6393860 to 6393900 40 + TSS region transcription start site region 5423
Tssr154649 19 6396554 to 6396556 2 + TSS region transcription start site region 154649
Tssr154650 19 6397640 to 6397659 19 + TSS region transcription start site region 154650
Tssr154651 19 6398140 to 6398155 15 + TSS region transcription start site region 154651
Cpgi10513 19 6398573 to 6400659 2086 CpG island CpG island 10513
Tssr5424 19 6398737 to 6398764 27 + TSS region transcription start site region 5424
Rasgrp2 19 6399340 to 6415216 15876 + protein coding gene RAS, guanyl releasing protein 2
Tssr154652 19 6399835 to 6399855 20 + TSS region transcription start site region 154652
Tssr154653 19 6399857 to 6399890 33 + TSS region transcription start site region 154653
Tssr154654 19 6400523 to 6400559 36 + TSS region transcription start site region 154654
Tssr154655 19 6400611 to 6400622 11 + TSS region transcription start site region 154655
Cpgi10514 19 6401405 to 6401898 493 CpG island CpG island 10514
Tssr154656 19 6401675 to 6401715 40 + TSS region transcription start site region 154656
Cpgi10515 19 6404675 to 6405112 437 CpG island CpG island 10515
Tssr154657 19 6408399 to 6408410 11 + TSS region transcription start site region 154657
Gm14965 19 6409400 to 6418606 9206 - lncRNA gene predicted gene 14965
Tssr154658 19 6413071 to 6413087 16 + TSS region transcription start site region 154658
Cpgi10516 19 6413076 to 6413318 242 CpG island CpG island 10516
Tssr154659 19 6413105 to 6413130 25 + TSS region transcription start site region 154659
Cpgi10517 19 6418245 to 6419355 1110 CpG island CpG island 10517
Tssr154660 19 6418733 to 6418810 77 + TSS region transcription start site region 154660
Nrxn2 19 6418738 to 6533217 114479 + protein coding gene neurexin II
Cpgi10518 19 6420613 to 6420807 194 CpG island CpG island 10518
Cpgi10519 19 6427613 to 6429221 1608 CpG island CpG island 10519
Cpgi10520 19 6497095 to 6498940 1845 CpG island CpG island 10520
Tssr154661 19 6497412 to 6497449 37 + TSS region transcription start site region 154661
Tssr154662 19 6497452 to 6497487 35 + TSS region transcription start site region 154662
Tssr154663 19 6497587 to 6497666 79 + TSS region transcription start site region 154663
Tssr154664 19 6497674 to 6497687 13 + TSS region transcription start site region 154664
Tssr154665 19 6497724 to 6497744 20 + TSS region transcription start site region 154665
Tssr154666 19 6497758 to 6497764 6 + TSS region transcription start site region 154666
Tssr154667 19 6497772 to 6497845 73 + TSS region transcription start site region 154667
Tssr154668 19 6497877 to 6497921 44 + TSS region transcription start site region 154668
Tssr154669 19 6497932 to 6497943 11 + TSS region transcription start site region 154669
Tssr154670 19 6497949 to 6497979 30 + TSS region transcription start site region 154670
Tssr154671 19 6498024 to 6498037 13 + TSS region transcription start site region 154671
Tssr154672 19 6498081 to 6498089 8 + TSS region transcription start site region 154672
Tssr154673 19 6498166 to 6498173 7 + TSS region transcription start site region 154673
Cpgi10521 19 6502063 to 6502808 745 CpG island CpG island 10521
Gm14964 19 6530711 to 6532011 1300 - antisense lncRNA gene predicted gene 14964
Cpgi10522 19 6531052 to 6532366 1314 CpG island CpG island 10522
Tssr154674 19 6531146 to 6531229 83 + TSS region transcription start site region 154674
Tssr5425 19 6531606 to 6531617 11 + TSS region transcription start site region 5425
Tssr157855 19 6531979 to 6531994 15 - TSS region transcription start site region 157855
Tssr157856 19 6532012 to 6532023 11 - TSS region transcription start site region 157856
Tssr157857 19 6532110 to 6532151 41 - TSS region transcription start site region 157857
Tssr154675 19 6532230 to 6532240 10 + TSS region transcription start site region 154675
Tssr157858 19 6532264 to 6532286 22 - TSS region transcription start site region 157858
Tssr157859 19 6532345 to 6532367 22 - TSS region transcription start site region 157859
Tssr157860 19 6532372 to 6532391 19 - TSS region transcription start site region 157860
Tssr154676 19 6532485 to 6532498 13 + TSS region transcription start site region 154676
Slc22a12 19 6535845 to 6543019 7174 - protein coding gene solute carrier family 22 (organic anion/cation transporter), member 12
Tssr157861 19 6541665 to 6541670 5 - TSS region transcription start site region 157861
Tssr157862 19 6542989 to 6543014 25 - TSS region transcription start site region 157862
Tssr157863 19 6543019 to 6543039 20 - TSS region transcription start site region 157863
Tssr157864 19 6543064 to 6543075 11 - TSS region transcription start site region 157864
Tssr157865 19 6543082 to 6543088 6 - TSS region transcription start site region 157865
Gm14967 19 6543771 to 6544899 1128 - antisense lncRNA gene predicted gene 14967
Cpgi10523 19 6549566 to 6549721 155 CpG island CpG island 10523
D19Mit77 19 6556525 to 6556656 131 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 77
Gm26460 19 6563780 to 6563905 125 + miRNA gene predicted gene, 26460
Gm32245 19 6567126 to 6578552 11426 + lncRNA gene predicted gene, 32245
Tssr157866 19 6571577 to 6571586 9 - TSS region transcription start site region 157866
Hmgb1-ps4 19 6592602 to 6593236 634 - pseudogene high mobility group box 1, pseudogene 4
2410152P15Rik 19 6617671 to 6674548 56877 - unclassified gene RIKEN cDNA 2410152P15 gene
Tssr154677 19 6643711 to 6643713 2 + TSS region transcription start site region 154677
Tssr154678 19 6645146 to 6645151 5 + TSS region transcription start site region 154678
Gm14968 19 6645687 to 6647172 1485 + lincRNA gene predicted gene 14968
Rps6ka4 19 6829085 to 6840601 11516 - protein coding gene ribosomal protein S6 kinase, polypeptide 4
Mir5046 19 6829886 to 6829944 58 - miRNA gene microRNA 5046
Cpgi10524 19 6829919 to 6831670 1751 CpG island CpG island 10524
Cpgi10525 19 6839338 to 6841022 1684 CpG island CpG island 10525
Tssr157867 19 6840567 to 6840582 15 - TSS region transcription start site region 157867
Tssr157868 19 6840590 to 6840644 54 - TSS region transcription start site region 157868
Tssr157869 19 6840861 to 6840878 17 - TSS region transcription start site region 157869
Ccdc88b 19 6844623 to 6858211 13588 - protein coding gene coiled-coil domain containing 88B
Cpgi10526 19 6847936 to 6848644 708 CpG island CpG island 10526
Tssr157870 19 6851101 to 6851108 7 - TSS region transcription start site region 157870
Tssr157871 19 6853639 to 6853665 26 - TSS region transcription start site region 157871
Cpgi10527 19 6855313 to 6855775 462 CpG island CpG island 10527
Tssr157872 19 6857481 to 6857504 23 - TSS region transcription start site region 157872
Tssr157873 19 6857515 to 6857541 26 - TSS region transcription start site region 157873
Tssr154679 19 6857624 to 6857636 12 + TSS region transcription start site region 154679
Tssr157874 19 6858173 to 6858178 5 - TSS region transcription start site region 157874
Tssr157875 19 6858179 to 6858218 39 - TSS region transcription start site region 157875
Tssr154680 19 6863675 to 6863687 12 + TSS region transcription start site region 154680
Tssr157876 19 6870675 to 6870698 23 - TSS region transcription start site region 157876
Tssr157877 19 6870737 to 6870761 24 - TSS region transcription start site region 157877
Tssr154681 19 6871125 to 6871138 13 + TSS region transcription start site region 154681
Tssr154682 19 6871207 to 6871221 14 + TSS region transcription start site region 154682
Tssr154683 19 6877300 to 6877305 5 + TSS region transcription start site region 154683
Tssr154684 19 6877798 to 6877802 4 + TSS region transcription start site region 154684
Tssr154685 19 6894284 to 6894300 16 + TSS region transcription start site region 154685
Tssr154686 19 6906698 to 6906711 13 + TSS region transcription start site region 154686
Prdx5 19 6906819 to 6909645 2826 - protein coding gene peroxiredoxin 5
Tssr157878 19 6906852 to 6906878 26 - TSS region transcription start site region 157878
Tssr157879 19 6906879 to 6906892 13 - TSS region transcription start site region 157879
Tssr154687 19 6906888 to 6906930 42 + TSS region transcription start site region 154687
Tssr157880 19 6906914 to 6906938 24 - TSS region transcription start site region 157880
Tssr157881 19 6907666 to 6907698 32 - TSS region transcription start site region 157881
Tssr157882 19 6907702 to 6907712 10 - TSS region transcription start site region 157882
Tssr157883 19 6907764 to 6907778 14 - TSS region transcription start site region 157883
Tssr154688 19 6907979 to 6907990 11 + TSS region transcription start site region 154688
Tssr157884 19 6908008 to 6908036 28 - TSS region transcription start site region 157884
Tssr157885 19 6908104 to 6908117 13 - TSS region transcription start site region 157885
Tssr157886 19 6908289 to 6908310 21 - TSS region transcription start site region 157886
Tssr157887 19 6908855 to 6908868 13 - TSS region transcription start site region 157887
Cpgi10528 19 6909275 to 6910720 1445 CpG island CpG island 10528
Tssr157888 19 6909564 to 6909596 32 - TSS region transcription start site region 157888
Tssr157889 19 6909599 to 6909626 27 - TSS region transcription start site region 157889
Tssr157890 19 6909633 to 6909691 58 - TSS region transcription start site region 157890
Tssr154689 19 6909692 to 6909721 29 + TSS region transcription start site region 154689
Trmt112 19 6909698 to 6911028 1330 + protein coding gene tRNA methyltransferase 11-2
Tssr154690 19 6909722 to 6909760 38 + TSS region transcription start site region 154690
Tssr154691 19 6909768 to 6909804 36 + TSS region transcription start site region 154691
Tssr154692 19 6909811 to 6909822 11 + TSS region transcription start site region 154692
Tssr157891 19 6909934 to 6910015 81 - TSS region transcription start site region 157891
Tssr157892 19 6910067 to 6910082 15 - TSS region transcription start site region 157892
Tssr157893 19 6910088 to 6910125 37 - TSS region transcription start site region 157893
Tssr154693 19 6910119 to 6910146 27 + TSS region transcription start site region 154693
Tssr157894 19 6910134 to 6910142 8 - TSS region transcription start site region 157894