Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:6348738-6603217

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Map4k2 19 6341135 to 6355615 14480 + protein coding gene mitogen-activated protein kinase kinase kinase kinase 2
Gm14966 19 6355522 to 6363759 8237 - antisense lncRNA gene predicted gene 14966
Tssr157853 19 6363213 to 6363230 17 - TSS region transcription start site region 157853
Cpgi10510 19 6363256 to 6364823 1567 CpG island CpG island 10510
Tssr157854 19 6363340 to 6363429 89 - TSS region transcription start site region 157854
Tssr154630 19 6363671 to 6363704 33 + TSS region transcription start site region 154630
Sf1 19 6363690 to 6378030 14340 + protein coding gene splicing factor 1
Tssr154631 19 6363726 to 6363737 11 + TSS region transcription start site region 154631
Tssr154632 19 6363896 to 6363941 45 + TSS region transcription start site region 154632
Tssr154633 19 6363946 to 6363960 14 + TSS region transcription start site region 154633
Tssr154634 19 6363989 to 6364042 53 + TSS region transcription start site region 154634
Tssr154635 19 6364578 to 6364668 90 + TSS region transcription start site region 154635
Tssr154636 19 6372582 to 6372598 16 + TSS region transcription start site region 154636
Tssr154637 19 6373641 to 6373660 19 + TSS region transcription start site region 154637
Tssr154638 19 6373670 to 6373718 48 + TSS region transcription start site region 154638
Tssr154639 19 6374771 to 6374791 20 + TSS region transcription start site region 154639
Tssr154640 19 6376012 to 6376017 5 + TSS region transcription start site region 154640
Tssr154641 19 6376538 to 6376558 20 + TSS region transcription start site region 154641
Tssr154642 19 6384395 to 6384422 27 + TSS region transcription start site region 154642
Pygm 19 6384408 to 6398464 14056 + protein coding gene muscle glycogen phosphorylase
Tssr154643 19 6384453 to 6384456 3 + TSS region transcription start site region 154643
Tssr154644 19 6386034 to 6386056 22 + TSS region transcription start site region 154644
Tssr154645 19 6386411 to 6386427 16 + TSS region transcription start site region 154645
Cpgi10511 19 6388113 to 6388343 230 CpG island CpG island 10511
Tssr154646 19 6389540 to 6389555 15 + TSS region transcription start site region 154646
Cpgi10512 19 6389591 to 6390135 544 CpG island CpG island 10512
Tssr154647 19 6389793 to 6389804 11 + TSS region transcription start site region 154647
Tssr154648 19 6393709 to 6393729 20 + TSS region transcription start site region 154648
Tssr5423 19 6393860 to 6393900 40 + TSS region transcription start site region 5423
Tssr154649 19 6396554 to 6396556 2 + TSS region transcription start site region 154649
Tssr154650 19 6397640 to 6397659 19 + TSS region transcription start site region 154650
Tssr154651 19 6398140 to 6398155 15 + TSS region transcription start site region 154651
Cpgi10513 19 6398573 to 6400659 2086 CpG island CpG island 10513
Tssr5424 19 6398737 to 6398764 27 + TSS region transcription start site region 5424
Rasgrp2 19 6399340 to 6415216 15876 + protein coding gene RAS, guanyl releasing protein 2
Tssr154652 19 6399835 to 6399855 20 + TSS region transcription start site region 154652
Tssr154653 19 6399857 to 6399890 33 + TSS region transcription start site region 154653
Tssr154654 19 6400523 to 6400559 36 + TSS region transcription start site region 154654
Tssr154655 19 6400611 to 6400622 11 + TSS region transcription start site region 154655
Cpgi10514 19 6401405 to 6401898 493 CpG island CpG island 10514
Tssr154656 19 6401675 to 6401715 40 + TSS region transcription start site region 154656
Cpgi10515 19 6404675 to 6405112 437 CpG island CpG island 10515
Tssr154657 19 6408399 to 6408410 11 + TSS region transcription start site region 154657
Gm14965 19 6409400 to 6418606 9206 - lncRNA gene predicted gene 14965
Tssr154658 19 6413071 to 6413087 16 + TSS region transcription start site region 154658
Cpgi10516 19 6413076 to 6413318 242 CpG island CpG island 10516
Tssr154659 19 6413105 to 6413130 25 + TSS region transcription start site region 154659
Cpgi10517 19 6418245 to 6419355 1110 CpG island CpG island 10517
Tssr154660 19 6418733 to 6418810 77 + TSS region transcription start site region 154660
Nrxn2 19 6418738 to 6533217 114479 + protein coding gene neurexin II
Cpgi10518 19 6420613 to 6420807 194 CpG island CpG island 10518
Cpgi10519 19 6427613 to 6429221 1608 CpG island CpG island 10519
Cpgi10520 19 6497095 to 6498940 1845 CpG island CpG island 10520
Tssr154661 19 6497412 to 6497449 37 + TSS region transcription start site region 154661
Tssr154662 19 6497452 to 6497487 35 + TSS region transcription start site region 154662
Tssr154663 19 6497587 to 6497666 79 + TSS region transcription start site region 154663
Tssr154664 19 6497674 to 6497687 13 + TSS region transcription start site region 154664
Tssr154665 19 6497724 to 6497744 20 + TSS region transcription start site region 154665
Tssr154666 19 6497758 to 6497764 6 + TSS region transcription start site region 154666
Tssr154667 19 6497772 to 6497845 73 + TSS region transcription start site region 154667
Tssr154668 19 6497877 to 6497921 44 + TSS region transcription start site region 154668
Tssr154669 19 6497932 to 6497943 11 + TSS region transcription start site region 154669
Tssr154670 19 6497949 to 6497979 30 + TSS region transcription start site region 154670
Tssr154671 19 6498024 to 6498037 13 + TSS region transcription start site region 154671
Tssr154672 19 6498081 to 6498089 8 + TSS region transcription start site region 154672
Tssr154673 19 6498166 to 6498173 7 + TSS region transcription start site region 154673
Cpgi10521 19 6502063 to 6502808 745 CpG island CpG island 10521
Gm14964 19 6530711 to 6532011 1300 - antisense lncRNA gene predicted gene 14964
Cpgi10522 19 6531052 to 6532366 1314 CpG island CpG island 10522
Tssr154674 19 6531146 to 6531229 83 + TSS region transcription start site region 154674
Tssr5425 19 6531606 to 6531617 11 + TSS region transcription start site region 5425
Tssr157855 19 6531979 to 6531994 15 - TSS region transcription start site region 157855
Tssr157856 19 6532012 to 6532023 11 - TSS region transcription start site region 157856
Tssr157857 19 6532110 to 6532151 41 - TSS region transcription start site region 157857
Tssr154675 19 6532230 to 6532240 10 + TSS region transcription start site region 154675
Tssr157858 19 6532264 to 6532286 22 - TSS region transcription start site region 157858
Tssr157859 19 6532345 to 6532367 22 - TSS region transcription start site region 157859
Tssr157860 19 6532372 to 6532391 19 - TSS region transcription start site region 157860
Tssr154676 19 6532485 to 6532498 13 + TSS region transcription start site region 154676
Slc22a12 19 6535845 to 6543019 7174 - protein coding gene solute carrier family 22 (organic anion/cation transporter), member 12
Tssr157861 19 6541665 to 6541670 5 - TSS region transcription start site region 157861
Tssr157862 19 6542989 to 6543014 25 - TSS region transcription start site region 157862
Tssr157863 19 6543019 to 6543039 20 - TSS region transcription start site region 157863
Tssr157864 19 6543064 to 6543075 11 - TSS region transcription start site region 157864
Tssr157865 19 6543082 to 6543088 6 - TSS region transcription start site region 157865
Gm14967 19 6543771 to 6544899 1128 - antisense lncRNA gene predicted gene 14967
Cpgi10523 19 6549566 to 6549721 155 CpG island CpG island 10523
D19Mit77 19 6556525 to 6556656 131 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 77
Gm26460 19 6563780 to 6563905 125 + miRNA gene predicted gene, 26460
Gm32245 19 6567126 to 6578552 11426 + lncRNA gene predicted gene, 32245
Tssr157866 19 6571577 to 6571586 9 - TSS region transcription start site region 157866
Hmgb1-ps4 19 6592602 to 6593236 634 - pseudogene high mobility group box 1, pseudogene 4