Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:6172063-6832808

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174 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Batf2 19 6164391 to 6172476 8085 + protein coding gene basic leucine zipper transcription factor, ATF-like 2
Tssr154589 19 6174863 to 6174908 45 + TSS region transcription start site region 154589
Cpgi10502 19 6184186 to 6184682 496 CpG island CpG island 10502
Tssr154590 19 6184339 to 6184352 13 + TSS region transcription start site region 154590
Tssr154591 19 6184363 to 6184375 12 + TSS region transcription start site region 154591
Majin 19 6184388 to 6224225 39837 + protein coding gene membrane anchored junction protein
D19Mit109 19 6207607 to 6207730 123 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 109
Tssr154592 19 6226378 to 6226381 3 + TSS region transcription start site region 154592
Gpha2 19 6226401 to 6227768 1367 + protein coding gene glycoprotein hormone alpha 2
Ppp2r5b 19 6227767 to 6235840 8073 - protein coding gene protein phosphatase 2, regulatory subunit B', beta
Tssr157842 19 6232302 to 6232306 4 - TSS region transcription start site region 157842
Tssr157843 19 6234953 to 6234981 28 - TSS region transcription start site region 157843
Cpgi10503 19 6235342 to 6236284 942 CpG island CpG island 10503
Tssr157844 19 6235665 to 6235679 14 - TSS region transcription start site region 157844
Tssr157845 19 6235804 to 6235860 56 - TSS region transcription start site region 157845
Cpgi10504 19 6241413 to 6242256 843 CpG island CpG island 10504
Atg2a 19 6241664 to 6262304 20640 + protein coding gene autophagy related 2A
Tssr154593 19 6241682 to 6241694 12 + TSS region transcription start site region 154593
Tssr154594 19 6241699 to 6241734 35 + TSS region transcription start site region 154594
Tssr5422 19 6242373 to 6242396 23 - TSS region transcription start site region 5422
Tssr154595 19 6244836 to 6244843 7 + TSS region transcription start site region 154595
Tssr154596 19 6263261 to 6263283 22 + TSS region transcription start site region 154596
Tssr154597 19 6263605 to 6263632 27 + TSS region transcription start site region 154597
Tssr157846 19 6264408 to 6264418 10 - TSS region transcription start site region 157846
Mir194-2 19 6264643 to 6264728 85 + miRNA gene microRNA 194-2
Mirc17 19 6264643 to 6264932 289 complex/cluster/region microRNA cluster 17, including Mir194-2 through Mir192
Mir192 19 6264844 to 6264932 88 + miRNA gene microRNA 192
Gm14963 19 6268795 to 6276605 7810 - lncRNA gene predicted gene 14963
Tssr154598 19 6269040 to 6269073 33 + TSS region transcription start site region 154598
Tssr154599 19 6275921 to 6275928 7 + TSS region transcription start site region 154599
Cpgi10505 19 6276131 to 6277739 1608 CpG island CpG island 10505
Tssr154600 19 6276168 to 6276172 4 + TSS region transcription start site region 154600
Tssr154601 19 6276780 to 6276792 12 + TSS region transcription start site region 154601
Tssr154602 19 6276850 to 6276891 41 + TSS region transcription start site region 154602
Ehd1 19 6276896 to 6300096 23200 + protein coding gene EH-domain containing 1
Tssr154603 19 6276899 to 6276936 37 + TSS region transcription start site region 154603
Tssr157847 19 6277724 to 6277766 42 - TSS region transcription start site region 157847
Tssr157848 19 6278195 to 6278220 25 - TSS region transcription start site region 157848
Tssr154604 19 6282063 to 6282067 4 + TSS region transcription start site region 154604
Tssr154605 19 6282745 to 6282761 16 + TSS region transcription start site region 154605
Tssr154606 19 6294427 to 6294445 18 + TSS region transcription start site region 154606
Tssr157849 19 6296658 to 6296665 7 - TSS region transcription start site region 157849
Tssr154607 19 6296822 to 6296847 25 + TSS region transcription start site region 154607
Tssr154608 19 6297902 to 6297924 22 + TSS region transcription start site region 154608
Tssr154609 19 6297943 to 6297969 26 + TSS region transcription start site region 154609
Tssr154610 19 6297986 to 6297995 9 + TSS region transcription start site region 154610
Tssr154611 19 6298289 to 6298294 5 + TSS region transcription start site region 154611
Tssr154612 19 6298700 to 6298738 38 + TSS region transcription start site region 154612
Tssr154613 19 6298845 to 6298863 18 + TSS region transcription start site region 154613
Tssr157850 19 6298891 to 6298902 11 - TSS region transcription start site region 157850
Tssr154614 19 6299124 to 6299154 30 + TSS region transcription start site region 154614
Tssr157851 19 6299579 to 6299619 40 - TSS region transcription start site region 157851
Tssr154615 19 6299726 to 6299748 22 + TSS region transcription start site region 154615
Tssr154616 19 6299771 to 6299782 11 + TSS region transcription start site region 154616
Cpgi10506 19 6305962 to 6307045 1083 CpG island CpG island 10506
Cdc42bpg 19 6306457 to 6325653 19196 + protein coding gene CDC42 binding protein kinase gamma (DMPK-like)
Tssr154617 19 6306538 to 6306553 15 + TSS region transcription start site region 154617
Tssr154618 19 6306626 to 6306638 12 + TSS region transcription start site region 154618
Tssr154619 19 6306872 to 6306896 24 + TSS region transcription start site region 154619
Tssr157852 19 6307836 to 6307845 9 - TSS region transcription start site region 157852
Cpgi10507 19 6334954 to 6335900 946 CpG island CpG island 10507
Men1 19 6334979 to 6340891 5912 + protein coding gene multiple endocrine neoplasia 1
Tssr154620 19 6335015 to 6335070 55 + TSS region transcription start site region 154620
Tssr154621 19 6335093 to 6335113 20 + TSS region transcription start site region 154621
Cpgi10508 19 6339909 to 6340105 196 CpG island CpG island 10508
Cpgi10509 19 6340724 to 6341998 1274 CpG island CpG island 10509
Tssr154622 19 6341121 to 6341247 126 + TSS region transcription start site region 154622
Map4k2 19 6341135 to 6355615 14480 + protein coding gene mitogen-activated protein kinase kinase kinase kinase 2
Tssr154623 19 6341423 to 6341486 63 + TSS region transcription start site region 154623
Tssr154624 19 6341746 to 6341793 47 + TSS region transcription start site region 154624
Tssr154625 19 6342534 to 6342542 8 + TSS region transcription start site region 154625
Tssr154626 19 6342549 to 6342560 11 + TSS region transcription start site region 154626
Tssr154627 19 6342562 to 6342573 11 + TSS region transcription start site region 154627
Tssr154628 19 6343782 to 6343793 11 + TSS region transcription start site region 154628
Tssr154629 19 6346411 to 6346425 14 + TSS region transcription start site region 154629
Mir6989 19 6346480 to 6346544 64 + miRNA gene microRNA 6989
Gm14966 19 6355522 to 6363759 8237 - antisense lncRNA gene predicted gene 14966
Tssr157853 19 6363213 to 6363230 17 - TSS region transcription start site region 157853
Cpgi10510 19 6363256 to 6364823 1567 CpG island CpG island 10510
Tssr157854 19 6363340 to 6363429 89 - TSS region transcription start site region 157854
Tssr154630 19 6363671 to 6363704 33 + TSS region transcription start site region 154630
Sf1 19 6363690 to 6378030 14340 + protein coding gene splicing factor 1
Tssr154631 19 6363726 to 6363737 11 + TSS region transcription start site region 154631
Tssr154632 19 6363896 to 6363941 45 + TSS region transcription start site region 154632
Tssr154633 19 6363946 to 6363960 14 + TSS region transcription start site region 154633
Tssr154634 19 6363989 to 6364042 53 + TSS region transcription start site region 154634
Tssr154635 19 6364578 to 6364668 90 + TSS region transcription start site region 154635
Tssr154636 19 6372582 to 6372598 16 + TSS region transcription start site region 154636
Tssr154637 19 6373641 to 6373660 19 + TSS region transcription start site region 154637
Tssr154638 19 6373670 to 6373718 48 + TSS region transcription start site region 154638
Tssr154639 19 6374771 to 6374791 20 + TSS region transcription start site region 154639
Tssr154640 19 6376012 to 6376017 5 + TSS region transcription start site region 154640
Tssr154641 19 6376538 to 6376558 20 + TSS region transcription start site region 154641
Tssr154642 19 6384395 to 6384422 27 + TSS region transcription start site region 154642
Pygm 19 6384408 to 6398464 14056 + protein coding gene muscle glycogen phosphorylase
Tssr154643 19 6384453 to 6384456 3 + TSS region transcription start site region 154643
Tssr154644 19 6386034 to 6386056 22 + TSS region transcription start site region 154644
Tssr154645 19 6386411 to 6386427 16 + TSS region transcription start site region 154645
Cpgi10511 19 6388113 to 6388343 230 CpG island CpG island 10511
Tssr154646 19 6389540 to 6389555 15 + TSS region transcription start site region 154646
Cpgi10512 19 6389591 to 6390135 544 CpG island CpG island 10512
Tssr154647 19 6389793 to 6389804 11 + TSS region transcription start site region 154647
Tssr154648 19 6393709 to 6393729 20 + TSS region transcription start site region 154648
Tssr5423 19 6393860 to 6393900 40 + TSS region transcription start site region 5423
Tssr154649 19 6396554 to 6396556 2 + TSS region transcription start site region 154649
Tssr154650 19 6397640 to 6397659 19 + TSS region transcription start site region 154650
Tssr154651 19 6398140 to 6398155 15 + TSS region transcription start site region 154651
Cpgi10513 19 6398573 to 6400659 2086 CpG island CpG island 10513
Tssr5424 19 6398737 to 6398764 27 + TSS region transcription start site region 5424
Rasgrp2 19 6399340 to 6415216 15876 + protein coding gene RAS, guanyl releasing protein 2
Tssr154652 19 6399835 to 6399855 20 + TSS region transcription start site region 154652
Tssr154653 19 6399857 to 6399890 33 + TSS region transcription start site region 154653
Tssr154654 19 6400523 to 6400559 36 + TSS region transcription start site region 154654
Tssr154655 19 6400611 to 6400622 11 + TSS region transcription start site region 154655
Cpgi10514 19 6401405 to 6401898 493 CpG island CpG island 10514
Tssr154656 19 6401675 to 6401715 40 + TSS region transcription start site region 154656
Cpgi10515 19 6404675 to 6405112 437 CpG island CpG island 10515
Tssr154657 19 6408399 to 6408410 11 + TSS region transcription start site region 154657
Gm14965 19 6409400 to 6418606 9206 - lncRNA gene predicted gene 14965
Tssr154658 19 6413071 to 6413087 16 + TSS region transcription start site region 154658
Cpgi10516 19 6413076 to 6413318 242 CpG island CpG island 10516
Tssr154659 19 6413105 to 6413130 25 + TSS region transcription start site region 154659
Cpgi10517 19 6418245 to 6419355 1110 CpG island CpG island 10517
Tssr154660 19 6418733 to 6418810 77 + TSS region transcription start site region 154660
Nrxn2 19 6418738 to 6533217 114479 + protein coding gene neurexin II
Cpgi10518 19 6420613 to 6420807 194 CpG island CpG island 10518
Cpgi10519 19 6427613 to 6429221 1608 CpG island CpG island 10519
Cpgi10520 19 6497095 to 6498940 1845 CpG island CpG island 10520
Tssr154661 19 6497412 to 6497449 37 + TSS region transcription start site region 154661
Tssr154662 19 6497452 to 6497487 35 + TSS region transcription start site region 154662
Tssr154663 19 6497587 to 6497666 79 + TSS region transcription start site region 154663
Tssr154664 19 6497674 to 6497687 13 + TSS region transcription start site region 154664
Tssr154665 19 6497724 to 6497744 20 + TSS region transcription start site region 154665
Tssr154666 19 6497758 to 6497764 6 + TSS region transcription start site region 154666
Tssr154667 19 6497772 to 6497845 73 + TSS region transcription start site region 154667
Tssr154668 19 6497877 to 6497921 44 + TSS region transcription start site region 154668
Tssr154669 19 6497932 to 6497943 11 + TSS region transcription start site region 154669
Tssr154670 19 6497949 to 6497979 30 + TSS region transcription start site region 154670
Tssr154671 19 6498024 to 6498037 13 + TSS region transcription start site region 154671
Tssr154672 19 6498081 to 6498089 8 + TSS region transcription start site region 154672
Tssr154673 19 6498166 to 6498173 7 + TSS region transcription start site region 154673
Cpgi10521 19 6502063 to 6502808 745 CpG island CpG island 10521
Gm14964 19 6530711 to 6532011 1300 - antisense lncRNA gene predicted gene 14964
Cpgi10522 19 6531052 to 6532366 1314 CpG island CpG island 10522
Tssr154674 19 6531146 to 6531229 83 + TSS region transcription start site region 154674
Tssr5425 19 6531606 to 6531617 11 + TSS region transcription start site region 5425
Tssr157855 19 6531979 to 6531994 15 - TSS region transcription start site region 157855
Tssr157856 19 6532012 to 6532023 11 - TSS region transcription start site region 157856
Tssr157857 19 6532110 to 6532151 41 - TSS region transcription start site region 157857
Tssr154675 19 6532230 to 6532240 10 + TSS region transcription start site region 154675
Tssr157858 19 6532264 to 6532286 22 - TSS region transcription start site region 157858
Tssr157859 19 6532345 to 6532367 22 - TSS region transcription start site region 157859
Tssr157860 19 6532372 to 6532391 19 - TSS region transcription start site region 157860
Tssr154676 19 6532485 to 6532498 13 + TSS region transcription start site region 154676
Slc22a12 19 6535845 to 6543019 7174 - protein coding gene solute carrier family 22 (organic anion/cation transporter), member 12
Tssr157861 19 6541665 to 6541670 5 - TSS region transcription start site region 157861
Tssr157862 19 6542989 to 6543014 25 - TSS region transcription start site region 157862
Tssr157863 19 6543019 to 6543039 20 - TSS region transcription start site region 157863
Tssr157864 19 6543064 to 6543075 11 - TSS region transcription start site region 157864
Tssr157865 19 6543082 to 6543088 6 - TSS region transcription start site region 157865
Gm14967 19 6543771 to 6544899 1128 - antisense lncRNA gene predicted gene 14967
Cpgi10523 19 6549566 to 6549721 155 CpG island CpG island 10523
D19Mit77 19 6556525 to 6556656 131 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 77
Gm26460 19 6563780 to 6563905 125 + miRNA gene predicted gene, 26460
Gm32245 19 6567126 to 6578552 11426 + lncRNA gene predicted gene, 32245
Tssr157866 19 6571577 to 6571586 9 - TSS region transcription start site region 157866
Hmgb1-ps4 19 6592602 to 6593236 634 - pseudogene high mobility group box 1, pseudogene 4
2410152P15Rik 19 6617671 to 6674548 56877 - unclassified gene RIKEN cDNA 2410152P15 gene
Tssr154677 19 6643711 to 6643713 2 + TSS region transcription start site region 154677
Tssr154678 19 6645146 to 6645151 5 + TSS region transcription start site region 154678
Gm14968 19 6645687 to 6647172 1485 + lincRNA gene predicted gene 14968
Rps6ka4 19 6829085 to 6840601 11516 - protein coding gene ribosomal protein S6 kinase, polypeptide 4
Mir5046 19 6829886 to 6829944 58 - miRNA gene microRNA 5046
Cpgi10524 19 6829919 to 6831670 1751 CpG island CpG island 10524