Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:60564749-61420968

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154 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacul1 19 60524696 to 60581023 56327 - protein coding gene CDK2 associated, cullin domain 1
Tssr160029 19 60575807 to 60575811 4 - TSS region transcription start site region 160029
Cpgi11136 19 60580129 to 60581413 1284 CpG island CpG island 11136
Tssr160030 19 60580357 to 60580405 48 - TSS region transcription start site region 160030
Gm25238 19 60580529 to 60580617 88 + miRNA gene predicted gene, 25238
Gm41883 19 60580815 to 60629961 49146 + lncRNA gene predicted gene, 41883
Tssr5574 19 60580870 to 60580881 11 - TSS region transcription start site region 5574
Tssr160031 19 60580885 to 60580992 107 - TSS region transcription start site region 160031
Tssr160032 19 60580993 to 60581011 18 - TSS region transcription start site region 160032
Tssr160033 19 60581013 to 60581025 12 - TSS region transcription start site region 160033
Tssr160034 19 60581159 to 60581191 32 - TSS region transcription start site region 160034
Tssr157355 19 60581246 to 60581263 17 + TSS region transcription start site region 157355
Tssr157356 19 60598523 to 60598538 15 + TSS region transcription start site region 157356
Gm46652 19 60610880 to 60625486 14606 + lncRNA gene predicted gene, 46652
Tssr157357 19 60611300 to 60611312 12 + TSS region transcription start site region 157357
Gm34459 19 60657510 to 60676474 18964 - lncRNA gene predicted gene, 34459
Gm34406 19 60670478 to 60686424 15946 + lncRNA gene predicted gene, 34406
Tssr157358 19 60712867 to 60712876 9 + TSS region transcription start site region 157358
Cpgi11137 19 60755512 to 60757361 1849 CpG island CpG island 11137
Tssr157359 19 60755947 to 60755979 32 + TSS region transcription start site region 157359
Nanos1 19 60755987 to 60759913 3926 + protein coding gene nanos C2HC-type zinc finger 1
Tssr157360 19 60756166 to 60756182 16 + TSS region transcription start site region 157360
Tssr157361 19 60756368 to 60756391 23 + TSS region transcription start site region 157361
Eif3a 19 60761116 to 60790693 29577 - protein coding gene eukaryotic translation initiation factor 3, subunit A
Tssr160035 19 60764168 to 60764232 64 - TSS region transcription start site region 160035
Tssr157362 19 60764183 to 60764208 25 + TSS region transcription start site region 157362
Tssr157363 19 60766321 to 60766348 27 + TSS region transcription start site region 157363
Tssr160036 19 60766368 to 60766385 17 - TSS region transcription start site region 160036
Tssr157364 19 60766380 to 60766471 91 + TSS region transcription start site region 157364
Tssr160037 19 60766411 to 60766423 12 - TSS region transcription start site region 160037
Tssr160038 19 60766429 to 60766442 13 - TSS region transcription start site region 160038
Tssr160039 19 60766463 to 60766516 53 - TSS region transcription start site region 160039
Tssr160040 19 60766521 to 60766533 12 - TSS region transcription start site region 160040
Tssr160041 19 60766553 to 60766594 41 - TSS region transcription start site region 160041
Tssr160042 19 60766595 to 60766607 12 - TSS region transcription start site region 160042
Tssr160043 19 60766614 to 60766625 11 - TSS region transcription start site region 160043
Tssr160044 19 60766657 to 60766685 28 - TSS region transcription start site region 160044
Tssr160045 19 60766698 to 60766729 31 - TSS region transcription start site region 160045
Tssr160046 19 60766737 to 60766748 11 - TSS region transcription start site region 160046
Tssr160047 19 60766788 to 60766813 25 - TSS region transcription start site region 160047
Tssr160048 19 60766834 to 60766847 13 - TSS region transcription start site region 160048
Tssr160049 19 60766913 to 60766934 21 - TSS region transcription start site region 160049
Tssr160050 19 60766957 to 60766975 18 - TSS region transcription start site region 160050
Tssr160051 19 60767612 to 60767651 39 - TSS region transcription start site region 160051
Tssr160052 19 60768839 to 60768865 26 - TSS region transcription start site region 160052
Tssr160053 19 60768900 to 60768911 11 - TSS region transcription start site region 160053
Tssr160054 19 60769927 to 60769938 11 - TSS region transcription start site region 160054
Tssr160055 19 60769939 to 60769954 15 - TSS region transcription start site region 160055
Tssr160056 19 60769960 to 60770000 40 - TSS region transcription start site region 160056
Tssr160057 19 60770012 to 60770023 11 - TSS region transcription start site region 160057
Tssr160058 19 60771035 to 60771072 37 - TSS region transcription start site region 160058
Tssr160059 19 60771673 to 60771690 17 - TSS region transcription start site region 160059
Tssr160060 19 60771696 to 60771707 11 - TSS region transcription start site region 160060
Tssr160061 19 60771717 to 60771744 27 - TSS region transcription start site region 160061
Tssr160062 19 60772715 to 60772726 11 - TSS region transcription start site region 160062
Tssr160063 19 60772734 to 60772760 26 - TSS region transcription start site region 160063
Tssr160064 19 60772888 to 60772941 53 - TSS region transcription start site region 160064
Tssr160065 19 60773928 to 60773952 24 - TSS region transcription start site region 160065
Mir3084-2 19 60774329 to 60774397 68 - miRNA gene microRNA 3084-2
Snora19 19 60774330 to 60774385 55 - snoRNA gene small nucleolar RNA, H/ACA box 19
Gm26158 19 60775521 to 60775639 118 - snoRNA gene predicted gene, 26158
Tssr160066 19 60775809 to 60775823 14 - TSS region transcription start site region 160066
Tssr160067 19 60776652 to 60776713 61 - TSS region transcription start site region 160067
Tssr160068 19 60782210 to 60782221 11 - TSS region transcription start site region 160068
Tssr160069 19 60787833 to 60787837 4 - TSS region transcription start site region 160069
Cpgi11138 19 60789883 to 60791163 1280 CpG island CpG island 11138
Gm10751 19 60790019 to 60791665 1646 protein coding gene predicted gene 10751
Tssr160070 19 60790563 to 60790570 7 - TSS region transcription start site region 160070
Tssr160071 19 60790584 to 60790602 18 - TSS region transcription start site region 160071
Tssr160072 19 60790617 to 60790672 55 - TSS region transcription start site region 160072
Tssr160073 19 60790692 to 60790700 8 - TSS region transcription start site region 160073
Tssr160074 19 60790708 to 60790713 5 - TSS region transcription start site region 160074
Tssr160075 19 60791010 to 60791053 43 - TSS region transcription start site region 160075
Cpgi11139 19 60811276 to 60812020 744 CpG island CpG island 11139
Tssr157365 19 60811574 to 60811619 45 + TSS region transcription start site region 157365
Fam45a 19 60811585 to 60836227 24642 + protein coding gene family with sequence similarity 45, member A
Tssr157366 19 60811836 to 60811879 43 + TSS region transcription start site region 157366
Tssr160076 19 60812189 to 60812208 19 - TSS region transcription start site region 160076
Tssr5575 19 60812220 to 60812221 1 - TSS region transcription start site region 5575
Gm15959 19 60815449 to 60815816 367 - pseudogene predicted gene 15959
Sfxn4 19 60837277 to 60861479 24202 - protein coding gene sideroflexin 4
Tssr160077 19 60860656 to 60860659 3 - TSS region transcription start site region 160077
Cpgi11140 19 60861202 to 60861653 451 CpG island CpG island 11140
Tssr160078 19 60861390 to 60861462 72 - TSS region transcription start site region 160078
Prdx3 19 60864066 to 60874538 10472 - protein coding gene peroxiredoxin 3
Tssr160079 19 60864201 to 60864205 4 - TSS region transcription start site region 160079
Tssr160080 19 60864432 to 60864450 18 - TSS region transcription start site region 160080
Cpgi11141 19 60874251 to 60874715 464 CpG island CpG island 11141
Tssr160081 19 60874472 to 60874510 38 - TSS region transcription start site region 160081
Tssr160082 19 60874526 to 60874550 24 - TSS region transcription start site region 160082
Tssr160083 19 60874564 to 60874568 4 - TSS region transcription start site region 160083
Cpgi11142 19 60889657 to 60890836 1179 CpG island CpG island 11142
Grk5 19 60889749 to 61092553 202804 + protein coding gene G protein-coupled receptor kinase 5
Tssr5576 19 60890289 to 60890299 10 + TSS region transcription start site region 5576
Tssr157367 19 60890363 to 60890392 29 + TSS region transcription start site region 157367
Tssr157368 19 60896209 to 60896212 3 + TSS region transcription start site region 157368
6030458E02Rik 19 60914611 to 60915766 1155 unclassified gene RIKEN cDNA 6030458E02 gene
Gm41885 19 60926467 to 60933440 6973 - protein coding gene predicted gene, 41885
Gm9529 19 60966672 to 60967254 582 - pseudogene predicted gene 9529
Tssr160084 19 60994272 to 60994298 26 - TSS region transcription start site region 160084
D19Jpk2 19 61009715 to 61009840 125 DNA segment DNA segment, Chr 19, Japan, Kominami 2
Gm22520 19 61013417 to 61013545 128 - snoRNA gene predicted gene, 22520
D19Dcr72 19 61013584 to 61013679 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 72
Tssr157369 19 61050892 to 61050894 2 + TSS region transcription start site region 157369
Zfp950 19 61053840 to 61140840 87000 - protein coding gene zinc finger protein 950
Tssr160085 19 61122609 to 61122613 4 - TSS region transcription start site region 160085
Gm4238 19 61134834 to 61135218 384 + pseudogene predicted gene 4238
Tssr160086 19 61140748 to 61140769 21 - TSS region transcription start site region 160086
Tssr160087 19 61140772 to 61140823 51 - TSS region transcription start site region 160087
Tssr157370 19 61151603 to 61151618 15 + TSS region transcription start site region 157370
Cpgi11143 19 61151821 to 61152091 270 CpG island CpG island 11143
Tssr157371 19 61151838 to 61151871 33 + TSS region transcription start site region 157371
Gm22365 19 61164365 to 61164481 116 - snRNA gene predicted gene, 22365
Gm5521 19 61166962 to 61168763 1801 + pseudogene predicted gene 5521
Tssr157372 19 61166973 to 61166979 6 + TSS region transcription start site region 157372
Gm7102 19 61174686 to 61176309 1623 - protein coding gene predicted gene 7102
Cpgi11144 19 61175758 to 61176297 539 CpG island CpG island 11144
Tssr157373 19 61176098 to 61176122 24 + TSS region transcription start site region 157373
Gm6020 19 61183890 to 61183955 65 + pseudogene predicted gene 6020
Tssr160088 19 61198749 to 61198767 18 - TSS region transcription start site region 160088
Tssr160089 19 61198769 to 61198781 12 - TSS region transcription start site region 160089
Cpgi11145 19 61199426 to 61199878 452 CpG island CpG island 11145
Tssr157374 19 61224397 to 61224440 43 + TSS region transcription start site region 157374
Csf2ra 19 61224402 to 61228418 4016 - protein coding gene colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)
Tssr157375 19 61224471 to 61224483 12 + TSS region transcription start site region 157375
Tssr157376 19 61224513 to 61224545 32 + TSS region transcription start site region 157376
Tssr157377 19 61224552 to 61224610 58 + TSS region transcription start site region 157377
Tssr160090 19 61224587 to 61224606 19 - TSS region transcription start site region 160090
Tssr160091 19 61224609 to 61224630 21 - TSS region transcription start site region 160091
Tssr157378 19 61224673 to 61224684 11 + TSS region transcription start site region 157378
Tssr157379 19 61224706 to 61224762 56 + TSS region transcription start site region 157379
Tssr160092 19 61224736 to 61224754 18 - TSS region transcription start site region 160092
Tssr160093 19 61224838 to 61224849 11 - TSS region transcription start site region 160093
Tssr160094 19 61224901 to 61224911 10 - TSS region transcription start site region 160094
Cpgi11146 19 61224911 to 61228872 3961 CpG island CpG island 11146
Tssr160095 19 61224987 to 61224998 11 - TSS region transcription start site region 160095
Tssr160096 19 61225408 to 61225446 38 - TSS region transcription start site region 160096
Tssr160097 19 61225599 to 61225642 43 - TSS region transcription start site region 160097
Tssr160098 19 61226076 to 61226102 26 - TSS region transcription start site region 160098
Tssr160099 19 61226284 to 61226305 21 - TSS region transcription start site region 160099
Tssr160100 19 61226337 to 61226381 44 - TSS region transcription start site region 160100
Tssr160101 19 61226650 to 61226700 50 - TSS region transcription start site region 160101
Tssr160102 19 61227193 to 61227218 25 - TSS region transcription start site region 160102
Tssr160103 19 61227305 to 61227376 71 - TSS region transcription start site region 160103
Tssr157380 19 61227492 to 61227503 11 + TSS region transcription start site region 157380
Tssr157381 19 61227757 to 61227761 4 + TSS region transcription start site region 157381
Tssr160104 19 61228386 to 61228395 9 - TSS region transcription start site region 160104
Tssr160105 19 61228396 to 61228454 58 - TSS region transcription start site region 160105
Gm4242 19 61231819 to 61233341 1522 - unclassified gene predicted gene 4242
Gm18999 19 61255810 to 61258626 2816 + pseudogene predicted gene, 18999
Cpgi11147 19 61257832 to 61258031 199 CpG island CpG island 11147
Gm21060 19 61296902 to 61297069 167 - protein coding gene predicted gene, 21060
Gm20762 19 61304837 to 61305295 458 - pseudogene predicted gene, 20762
n-TMcat19 19 61320836 to 61320908 72 - tRNA gene nuclear encoded tRNA methionine 19 (anticodon CAT)