Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:60509939-61029954

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacul1 19 60524696 to 60581023 56327 - protein coding gene CDK2 associated, cullin domain 1
Tssr160027 19 60534249 to 60534270 21 - TSS region transcription start site region 160027
Tssr160028 19 60537524 to 60537528 4 - TSS region transcription start site region 160028
Gm41884 19 60547430 to 60551112 3682 - lncRNA gene predicted gene, 41884
Tssr160029 19 60575807 to 60575811 4 - TSS region transcription start site region 160029
Cpgi11136 19 60580129 to 60581413 1284 CpG island CpG island 11136
Tssr160030 19 60580357 to 60580405 48 - TSS region transcription start site region 160030
Gm25238 19 60580529 to 60580617 88 + miRNA gene predicted gene, 25238
Gm41883 19 60580815 to 60629961 49146 + lncRNA gene predicted gene, 41883
Tssr5574 19 60580870 to 60580881 11 - TSS region transcription start site region 5574
Tssr160031 19 60580885 to 60580992 107 - TSS region transcription start site region 160031
Tssr160032 19 60580993 to 60581011 18 - TSS region transcription start site region 160032
Tssr160033 19 60581013 to 60581025 12 - TSS region transcription start site region 160033
Tssr160034 19 60581159 to 60581191 32 - TSS region transcription start site region 160034
Tssr157355 19 60581246 to 60581263 17 + TSS region transcription start site region 157355
Tssr157356 19 60598523 to 60598538 15 + TSS region transcription start site region 157356
Gm46652 19 60610880 to 60625486 14606 + lncRNA gene predicted gene, 46652
Tssr157357 19 60611300 to 60611312 12 + TSS region transcription start site region 157357
Gm34459 19 60657510 to 60676474 18964 - lncRNA gene predicted gene, 34459
Gm34406 19 60670478 to 60686424 15946 + lncRNA gene predicted gene, 34406
Tssr157358 19 60712867 to 60712876 9 + TSS region transcription start site region 157358
Cpgi11137 19 60755512 to 60757361 1849 CpG island CpG island 11137
Tssr157359 19 60755947 to 60755979 32 + TSS region transcription start site region 157359
Nanos1 19 60755987 to 60759913 3926 + protein coding gene nanos C2HC-type zinc finger 1
Tssr157360 19 60756166 to 60756182 16 + TSS region transcription start site region 157360
Tssr157361 19 60756368 to 60756391 23 + TSS region transcription start site region 157361
Eif3a 19 60761116 to 60790693 29577 - protein coding gene eukaryotic translation initiation factor 3, subunit A
Tssr160035 19 60764168 to 60764232 64 - TSS region transcription start site region 160035
Tssr157362 19 60764183 to 60764208 25 + TSS region transcription start site region 157362
Tssr157363 19 60766321 to 60766348 27 + TSS region transcription start site region 157363
Tssr160036 19 60766368 to 60766385 17 - TSS region transcription start site region 160036
Tssr157364 19 60766380 to 60766471 91 + TSS region transcription start site region 157364
Tssr160037 19 60766411 to 60766423 12 - TSS region transcription start site region 160037
Tssr160038 19 60766429 to 60766442 13 - TSS region transcription start site region 160038
Tssr160039 19 60766463 to 60766516 53 - TSS region transcription start site region 160039
Tssr160040 19 60766521 to 60766533 12 - TSS region transcription start site region 160040
Tssr160041 19 60766553 to 60766594 41 - TSS region transcription start site region 160041
Tssr160042 19 60766595 to 60766607 12 - TSS region transcription start site region 160042
Tssr160043 19 60766614 to 60766625 11 - TSS region transcription start site region 160043
Tssr160044 19 60766657 to 60766685 28 - TSS region transcription start site region 160044
Tssr160045 19 60766698 to 60766729 31 - TSS region transcription start site region 160045
Tssr160046 19 60766737 to 60766748 11 - TSS region transcription start site region 160046
Tssr160047 19 60766788 to 60766813 25 - TSS region transcription start site region 160047
Tssr160048 19 60766834 to 60766847 13 - TSS region transcription start site region 160048
Tssr160049 19 60766913 to 60766934 21 - TSS region transcription start site region 160049
Tssr160050 19 60766957 to 60766975 18 - TSS region transcription start site region 160050
Tssr160051 19 60767612 to 60767651 39 - TSS region transcription start site region 160051
Tssr160052 19 60768839 to 60768865 26 - TSS region transcription start site region 160052
Tssr160053 19 60768900 to 60768911 11 - TSS region transcription start site region 160053
Tssr160054 19 60769927 to 60769938 11 - TSS region transcription start site region 160054
Tssr160055 19 60769939 to 60769954 15 - TSS region transcription start site region 160055
Tssr160056 19 60769960 to 60770000 40 - TSS region transcription start site region 160056
Tssr160057 19 60770012 to 60770023 11 - TSS region transcription start site region 160057
Tssr160058 19 60771035 to 60771072 37 - TSS region transcription start site region 160058
Tssr160059 19 60771673 to 60771690 17 - TSS region transcription start site region 160059
Tssr160060 19 60771696 to 60771707 11 - TSS region transcription start site region 160060
Tssr160061 19 60771717 to 60771744 27 - TSS region transcription start site region 160061
Tssr160062 19 60772715 to 60772726 11 - TSS region transcription start site region 160062
Tssr160063 19 60772734 to 60772760 26 - TSS region transcription start site region 160063
Tssr160064 19 60772888 to 60772941 53 - TSS region transcription start site region 160064
Tssr160065 19 60773928 to 60773952 24 - TSS region transcription start site region 160065
Mir3084-2 19 60774329 to 60774397 68 - miRNA gene microRNA 3084-2
Snora19 19 60774330 to 60774385 55 - snoRNA gene small nucleolar RNA, H/ACA box 19
Gm26158 19 60775521 to 60775639 118 - snoRNA gene predicted gene, 26158
Tssr160066 19 60775809 to 60775823 14 - TSS region transcription start site region 160066
Tssr160067 19 60776652 to 60776713 61 - TSS region transcription start site region 160067
Tssr160068 19 60782210 to 60782221 11 - TSS region transcription start site region 160068
Tssr160069 19 60787833 to 60787837 4 - TSS region transcription start site region 160069
Cpgi11138 19 60789883 to 60791163 1280 CpG island CpG island 11138
Gm10751 19 60790019 to 60791665 1646 protein coding gene predicted gene 10751
Tssr160070 19 60790563 to 60790570 7 - TSS region transcription start site region 160070
Tssr160071 19 60790584 to 60790602 18 - TSS region transcription start site region 160071
Tssr160072 19 60790617 to 60790672 55 - TSS region transcription start site region 160072
Tssr160073 19 60790692 to 60790700 8 - TSS region transcription start site region 160073
Tssr160074 19 60790708 to 60790713 5 - TSS region transcription start site region 160074
Tssr160075 19 60791010 to 60791053 43 - TSS region transcription start site region 160075
Cpgi11139 19 60811276 to 60812020 744 CpG island CpG island 11139
Tssr157365 19 60811574 to 60811619 45 + TSS region transcription start site region 157365
Fam45a 19 60811585 to 60836227 24642 + protein coding gene family with sequence similarity 45, member A
Tssr157366 19 60811836 to 60811879 43 + TSS region transcription start site region 157366
Tssr160076 19 60812189 to 60812208 19 - TSS region transcription start site region 160076
Tssr5575 19 60812220 to 60812221 1 - TSS region transcription start site region 5575
Gm15959 19 60815449 to 60815816 367 - pseudogene predicted gene 15959
Sfxn4 19 60837277 to 60861479 24202 - protein coding gene sideroflexin 4
Tssr160077 19 60860656 to 60860659 3 - TSS region transcription start site region 160077
Cpgi11140 19 60861202 to 60861653 451 CpG island CpG island 11140
Tssr160078 19 60861390 to 60861462 72 - TSS region transcription start site region 160078
Prdx3 19 60864066 to 60874538 10472 - protein coding gene peroxiredoxin 3
Tssr160079 19 60864201 to 60864205 4 - TSS region transcription start site region 160079
Tssr160080 19 60864432 to 60864450 18 - TSS region transcription start site region 160080
Cpgi11141 19 60874251 to 60874715 464 CpG island CpG island 11141
Tssr160081 19 60874472 to 60874510 38 - TSS region transcription start site region 160081
Tssr160082 19 60874526 to 60874550 24 - TSS region transcription start site region 160082
Tssr160083 19 60874564 to 60874568 4 - TSS region transcription start site region 160083
Cpgi11142 19 60889657 to 60890836 1179 CpG island CpG island 11142
Grk5 19 60889749 to 61092553 202804 + protein coding gene G protein-coupled receptor kinase 5
Tssr5576 19 60890289 to 60890299 10 + TSS region transcription start site region 5576
Tssr157367 19 60890363 to 60890392 29 + TSS region transcription start site region 157367
Tssr157368 19 60896209 to 60896212 3 + TSS region transcription start site region 157368
6030458E02Rik 19 60914611 to 60915766 1155 unclassified gene RIKEN cDNA 6030458E02 gene
Gm41885 19 60926467 to 60933440 6973 - protein coding gene predicted gene, 41885
Gm9529 19 60966672 to 60967254 582 - pseudogene predicted gene 9529
Tssr160084 19 60994272 to 60994298 26 - TSS region transcription start site region 160084
D19Jpk2 19 61009715 to 61009840 125 DNA segment DNA segment, Chr 19, Japan, Kominami 2
Gm22520 19 61013417 to 61013545 128 - snoRNA gene predicted gene, 22520
D19Dcr72 19 61013584 to 61013679 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 72