Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:59941177-60511809

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rab11fip2 19 59902884 to 59943654 40770 - protein coding gene RAB11 family interacting protein 2 (class I)
Cpgi11133 19 59942952 to 59943998 1046 CpG island CpG island 11133
Tssr160019 19 59943074 to 59943100 26 - TSS region transcription start site region 160019
Tssr160020 19 59943568 to 59943579 11 - TSS region transcription start site region 160020
Tssr160021 19 59943582 to 59943595 13 - TSS region transcription start site region 160021
Tssr160022 19 59943596 to 59943638 42 - TSS region transcription start site region 160022
Tssr160023 19 59943647 to 59943678 31 - TSS region transcription start site region 160023
Gm4219 19 59943722 to 59948398 4676 + unclassified non-coding RNA gene predicted gene 4219
Gm41879 19 60035900 to 60039033 3133 - lncRNA gene predicted gene, 41879
Gm41880 19 60040385 to 60050388 10003 - lncRNA gene predicted gene, 41880
Csf1r-ps 19 60079370 to 60081998 2628 + pseudogene colony stimulating factor 1 receptor (granulocyte), pseudogene
Gm46663 19 60107521 to 60116299 8778 - lncRNA gene predicted gene, 46663
Gm41881 19 60135549 to 60140383 4834 - lncRNA gene predicted gene, 41881
Tssr157353 19 60144591 to 60144602 11 + TSS region transcription start site region 157353
E330013P04Rik 19 60144675 to 60162591 17916 + lincRNA gene RIKEN cDNA E330013P04 gene
Tssr157354 19 60144682 to 60144697 15 + TSS region transcription start site region 157354
Fam204a 19 60198586 to 60226697 28111 - protein coding gene family with sequence similarity 204, member A
Tssr160024 19 60224899 to 60224905 6 - TSS region transcription start site region 160024
Cpgi11134 19 60226177 to 60226809 632 CpG island CpG island 11134
4933412A08Rik 19 60226334 to 60227678 1344 + pseudogene RIKEN cDNA 4933412A08 gene
Tssr160025 19 60226638 to 60226649 11 - TSS region transcription start site region 160025
Tssr160026 19 60226666 to 60226706 40 - TSS region transcription start site region 160026
Gm28351 19 60241853 to 60243581 1728 + lincRNA gene predicted gene 28351
D19Dcr71 19 60278894 to 60278989 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 71
Gm41882 19 60310847 to 60325262 14415 - lncRNA gene predicted gene, 41882
Gm34300 19 60375885 to 60387027 11142 - lncRNA gene predicted gene, 34300
Prlhr 19 60466733 to 60468304 1571 - protein coding gene prolactin releasing hormone receptor
Cpgi11135 19 60466956 to 60468324 1368 CpG island CpG island 11135