Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:5932736-6182769

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pola2 19 5940543 to 5964206 23663 - protein coding gene polymerase (DNA directed), alpha 2
Tssr157803 19 5952065 to 5952075 10 - TSS region transcription start site region 157803
Tssr157804 19 5952183 to 5952220 37 - TSS region transcription start site region 157804
Tssr154534 19 5952629 to 5952640 11 + TSS region transcription start site region 154534
Tssr154535 19 5953618 to 5953632 14 + TSS region transcription start site region 154535
Tssr157805 19 5955605 to 5955609 4 - TSS region transcription start site region 157805
Cpgi10489 19 5963723 to 5964573 850 CpG island CpG island 10489
Tssr157806 19 5964132 to 5964210 78 - TSS region transcription start site region 157806
Tssr154536 19 5964267 to 5964306 39 + TSS region transcription start site region 154536
Slc22a20 19 5970234 to 5986143 15909 - protein coding gene solute carrier family 22 (organic anion transporter), member 20
Gm31719 19 5970486 to 5984846 14360 + lncRNA gene predicted gene, 31719
Capn1 19 5988546 to 6015825 27279 - protein coding gene calpain 1
Tssr157807 19 5989166 to 5989185 19 - TSS region transcription start site region 157807
Tssr157808 19 5989270 to 5989311 41 - TSS region transcription start site region 157808
Tssr157809 19 5989347 to 5989360 13 - TSS region transcription start site region 157809
Tssr157810 19 5991578 to 5991627 49 - TSS region transcription start site region 157810
Tssr5421 19 5992087 to 5992105 18 - TSS region transcription start site region 5421
Gm10814 19 6012620 to 6018426 5806 + lincRNA gene predicted gene 10814
Tssr157811 19 6015152 to 6015198 46 - TSS region transcription start site region 157811
Cpgi10490 19 6015291 to 6015954 663 CpG island CpG island 10490
Tssr157812 19 6015489 to 6015505 16 - TSS region transcription start site region 157812
Tssr157813 19 6015514 to 6015528 14 - TSS region transcription start site region 157813
Tssr157814 19 6015769 to 6015830 61 - TSS region transcription start site region 157814
Tssr157815 19 6015842 to 6015871 29 - TSS region transcription start site region 157815
Gm19505 19 6027533 to 6028401 868 - pseudogene predicted gene, 19505
Tssr154537 19 6036715 to 6036716 1 + TSS region transcription start site region 154537
Gm8034 19 6044691 to 6044822 131 - pseudogene predicted gene 8034
Tssr157816 19 6044890 to 6044901 11 - TSS region transcription start site region 157816
D530017H19Rik 19 6045059 to 6047018 1959 unclassified non-coding RNA gene RIKEN cDNA D530017H19 gene
Tssr154538 19 6046104 to 6046113 9 + TSS region transcription start site region 154538
Cpgi10491 19 6046214 to 6047733 1519 CpG island CpG island 10491
Syvn1 19 6046576 to 6053712 7136 + protein coding gene synovial apoptosis inhibitor 1, synoviolin
Tssr154539 19 6046629 to 6046645 16 + TSS region transcription start site region 154539
Tssr157817 19 6046948 to 6047031 83 - TSS region transcription start site region 157817
Tssr154540 19 6047021 to 6047041 20 + TSS region transcription start site region 154540
Tssr154541 19 6047055 to 6047080 25 + TSS region transcription start site region 154541
Tssr154542 19 6047081 to 6047103 22 + TSS region transcription start site region 154542
Tssr157818 19 6047410 to 6047424 14 - TSS region transcription start site region 157818
Tssr154543 19 6050630 to 6050653 23 + TSS region transcription start site region 154543
Mir6988 19 6051334 to 6051392 58 + miRNA gene microRNA 6988
Tssr154544 19 6051392 to 6051406 14 + TSS region transcription start site region 154544
Mrpl49 19 6053630 to 6057751 4121 - protein coding gene mitochondrial ribosomal protein L49
Cpgi10492 19 6057387 to 6058338 951 CpG island CpG island 10492
Tssr157819 19 6057736 to 6057769 33 - TSS region transcription start site region 157819
Fau 19 6057888 to 6059524 1636 + protein coding gene Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)
Tssr154545 19 6057892 to 6057914 22 + TSS region transcription start site region 154545
Tssr154546 19 6057925 to 6057958 33 + TSS region transcription start site region 154546
Tssr154547 19 6058134 to 6058206 72 + TSS region transcription start site region 154547
Tssr154548 19 6058210 to 6058230 20 + TSS region transcription start site region 154548
Tssr154549 19 6058235 to 6058246 11 + TSS region transcription start site region 154549
Tssr154550 19 6058321 to 6058359 38 + TSS region transcription start site region 154550
Cpgi10493 19 6060986 to 6062408 1422 CpG island CpG island 10493
Tssr154551 19 6061176 to 6061235 59 + TSS region transcription start site region 154551
Znhit2 19 6061207 to 6062468 1261 + protein coding gene zinc finger, HIT domain containing 2
Tssr154552 19 6061237 to 6061252 15 + TSS region transcription start site region 154552
Tssr154553 19 6061267 to 6061288 21 + TSS region transcription start site region 154553
Tssr154554 19 6061338 to 6061377 39 + TSS region transcription start site region 154554
Tssr154555 19 6061384 to 6061395 11 + TSS region transcription start site region 154555
Tssr154556 19 6061438 to 6061449 11 + TSS region transcription start site region 154556
Tssr154557 19 6061466 to 6061479 13 + TSS region transcription start site region 154557
Tssr154558 19 6061503 to 6061527 24 + TSS region transcription start site region 154558
Tssr154559 19 6061530 to 6061562 32 + TSS region transcription start site region 154559
Tssr157820 19 6062111 to 6062156 45 - TSS region transcription start site region 157820
Tm7sf2 19 6062821 to 6067850 5029 - protein coding gene transmembrane 7 superfamily member 2
Cpgi10494 19 6067076 to 6068323 1247 CpG island CpG island 10494
Tssr157821 19 6067795 to 6067865 70 - TSS region transcription start site region 157821
Vps51 19 6067842 to 6077187 9345 - protein coding gene VPS51 GARP complex subunit
Cpgi10495 19 6070761 to 6071034 273 CpG island CpG island 10495
Cpgi10496 19 6076845 to 6077457 612 CpG island CpG island 10496
Gm28374 19 6076945 to 6082256 5311 - protein coding gene predicted gene 28374
Tssr157822 19 6077183 to 6077229 46 - TSS region transcription start site region 157822
Tssr154560 19 6080017 to 6080028 11 + TSS region transcription start site region 154560
Tssr154561 19 6080029 to 6080042 13 + TSS region transcription start site region 154561
Tmem262 19 6080033 to 6080788 755 + protein coding gene transmembrane protein 262
Tssr157823 19 6080311 to 6080336 25 - TSS region transcription start site region 157823
Zfpl1 19 6080757 to 6084939 4182 - protein coding gene zinc finger like protein 1
Cpgi10497 19 6084327 to 6085594 1267 CpG island CpG island 10497
Tssr157824 19 6084679 to 6084690 11 - TSS region transcription start site region 157824
Tssr157825 19 6084698 to 6084731 33 - TSS region transcription start site region 157825
Tssr157826 19 6084873 to 6084940 67 - TSS region transcription start site region 157826
Tssr157827 19 6084941 to 6084957 16 - TSS region transcription start site region 157827
Tssr154562 19 6085039 to 6085051 12 + TSS region transcription start site region 154562
Tssr154563 19 6085053 to 6085146 93 + TSS region transcription start site region 154563
Cdca5 19 6085097 to 6091773 6676 + protein coding gene cell division cycle associated 5
Gm550 19 6093724 to 6098236 4512 + protein coding gene predicted gene 550
Tssr154564 19 6095773 to 6095777 4 + TSS region transcription start site region 154564
Tssr154565 19 6095798 to 6095843 45 + TSS region transcription start site region 154565
Tssr154566 19 6095857 to 6095875 18 + TSS region transcription start site region 154566
Tssr154567 19 6105774 to 6105789 15 + TSS region transcription start site region 154567
Naaladl1 19 6105798 to 6115555 9757 + protein coding gene N-acetylated alpha-linked acidic dipeptidase-like 1
Tssr154568 19 6106122 to 6106133 11 + TSS region transcription start site region 154568
Cpgi10498 19 6106138 to 6106364 226 CpG island CpG island 10498
Tssr154569 19 6106404 to 6106428 24 + TSS region transcription start site region 154569
Tssr154570 19 6106879 to 6106904 25 + TSS region transcription start site region 154570
Tssr154571 19 6108448 to 6108458 10 + TSS region transcription start site region 154571
Tssr154572 19 6108614 to 6108624 10 + TSS region transcription start site region 154572
Tssr154573 19 6108680 to 6108697 17 + TSS region transcription start site region 154573
Tssr154574 19 6112886 to 6112902 16 + TSS region transcription start site region 154574
Tssr154575 19 6112906 to 6112914 8 + TSS region transcription start site region 154575
Tssr154576 19 6112924 to 6112937 13 + TSS region transcription start site region 154576
Tssr154577 19 6112940 to 6112946 6 + TSS region transcription start site region 154577
Tssr154578 19 6114448 to 6114456 8 + TSS region transcription start site region 154578
Tssr154579 19 6114458 to 6114471 13 + TSS region transcription start site region 154579
Tssr154580 19 6114850 to 6114862 12 + TSS region transcription start site region 154580
Tssr154581 19 6115570 to 6115587 17 + TSS region transcription start site region 154581
Tssr154582 19 6115717 to 6115726 9 + TSS region transcription start site region 154582
Sac3d1 19 6116004 to 6118586 2582 - protein coding gene SAC3 domain containing 1
Cpgi10499 19 6117599 to 6118723 1124 CpG island CpG island 10499
Tssr157828 19 6117843 to 6117860 17 - TSS region transcription start site region 157828
Tssr157829 19 6118215 to 6118233 18 - TSS region transcription start site region 157829
Tssr157830 19 6118234 to 6118268 34 - TSS region transcription start site region 157830
Tssr157831 19 6118468 to 6118479 11 - TSS region transcription start site region 157831
Tssr157832 19 6118491 to 6118554 63 - TSS region transcription start site region 157832
Snx15 19 6119399 to 6128304 8905 - protein coding gene sorting nexin 15
Tssr157833 19 6121857 to 6121892 35 - TSS region transcription start site region 157833
Tssr157834 19 6127825 to 6127842 17 - TSS region transcription start site region 157834
Cpgi10500 19 6127931 to 6128359 428 CpG island CpG island 10500
Tssr157835 19 6128144 to 6128191 47 - TSS region transcription start site region 157835
Tssr157836 19 6128208 to 6128289 81 - TSS region transcription start site region 157836
Arl2 19 6134389 to 6141137 6748 - protein coding gene ADP-ribosylation factor-like 2
Cpgi10501 19 6140389 to 6141576 1187 CpG island CpG island 10501
Tssr157837 19 6141075 to 6141122 47 - TSS region transcription start site region 157837
Tssr157838 19 6141128 to 6141168 40 - TSS region transcription start site region 157838
Tssr157839 19 6141178 to 6141190 12 - TSS region transcription start site region 157839
Tssr157840 19 6141199 to 6141209 10 - TSS region transcription start site region 157840
Tssr157841 19 6141402 to 6141424 22 - TSS region transcription start site region 157841
n-R5s19 19 6144732 to 6144851 119 + rRNA gene nuclear encoded rRNA 5S 19
Gm5510 19 6152715 to 6153200 485 + pseudogene predicted pseudogene 5510
Batf2 19 6164391 to 6172476 8085 + protein coding gene basic leucine zipper transcription factor, ATF-like 2
Tssr154583 19 6164433 to 6164446 13 + TSS region transcription start site region 154583
Tssr154584 19 6164450 to 6164461 11 + TSS region transcription start site region 154584
Tssr154585 19 6164478 to 6164511 33 + TSS region transcription start site region 154585
Tssr154586 19 6165738 to 6165751 13 + TSS region transcription start site region 154586
Tssr154587 19 6165766 to 6165777 11 + TSS region transcription start site region 154587
Tssr154588 19 6171957 to 6171964 7 + TSS region transcription start site region 154588
Tssr154589 19 6174863 to 6174908 45 + TSS region transcription start site region 154589