Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:5932087-6052105

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pola2 19 5940543 to 5964206 23663 - protein coding gene polymerase (DNA directed), alpha 2
Tssr157803 19 5952065 to 5952075 10 - TSS region transcription start site region 157803
Tssr157804 19 5952183 to 5952220 37 - TSS region transcription start site region 157804
Tssr154534 19 5952629 to 5952640 11 + TSS region transcription start site region 154534
Tssr154535 19 5953618 to 5953632 14 + TSS region transcription start site region 154535
Tssr157805 19 5955605 to 5955609 4 - TSS region transcription start site region 157805
Cpgi10489 19 5963723 to 5964573 850 CpG island CpG island 10489
Tssr157806 19 5964132 to 5964210 78 - TSS region transcription start site region 157806
Tssr154536 19 5964267 to 5964306 39 + TSS region transcription start site region 154536
Slc22a20 19 5970234 to 5986143 15909 - protein coding gene solute carrier family 22 (organic anion transporter), member 20
Gm31719 19 5970486 to 5984846 14360 + lncRNA gene predicted gene, 31719
Capn1 19 5988546 to 6015825 27279 - protein coding gene calpain 1
Tssr157807 19 5989166 to 5989185 19 - TSS region transcription start site region 157807
Tssr157808 19 5989270 to 5989311 41 - TSS region transcription start site region 157808
Tssr157809 19 5989347 to 5989360 13 - TSS region transcription start site region 157809
Tssr157810 19 5991578 to 5991627 49 - TSS region transcription start site region 157810
Tssr5421 19 5992087 to 5992105 18 - TSS region transcription start site region 5421
Gm10814 19 6012620 to 6018426 5806 + lincRNA gene predicted gene 10814
Tssr157811 19 6015152 to 6015198 46 - TSS region transcription start site region 157811
Cpgi10490 19 6015291 to 6015954 663 CpG island CpG island 10490
Tssr157812 19 6015489 to 6015505 16 - TSS region transcription start site region 157812
Tssr157813 19 6015514 to 6015528 14 - TSS region transcription start site region 157813
Tssr157814 19 6015769 to 6015830 61 - TSS region transcription start site region 157814
Tssr157815 19 6015842 to 6015871 29 - TSS region transcription start site region 157815
Gm19505 19 6027533 to 6028401 868 - pseudogene predicted gene, 19505
Tssr154537 19 6036715 to 6036716 1 + TSS region transcription start site region 154537
Gm8034 19 6044691 to 6044822 131 - pseudogene predicted gene 8034
Tssr157816 19 6044890 to 6044901 11 - TSS region transcription start site region 157816
D530017H19Rik 19 6045059 to 6047018 1959 unclassified non-coding RNA gene RIKEN cDNA D530017H19 gene
Tssr154538 19 6046104 to 6046113 9 + TSS region transcription start site region 154538
Cpgi10491 19 6046214 to 6047733 1519 CpG island CpG island 10491
Syvn1 19 6046576 to 6053712 7136 + protein coding gene synovial apoptosis inhibitor 1, synoviolin
Tssr154539 19 6046629 to 6046645 16 + TSS region transcription start site region 154539
Tssr157817 19 6046948 to 6047031 83 - TSS region transcription start site region 157817
Tssr154540 19 6047021 to 6047041 20 + TSS region transcription start site region 154540
Tssr154541 19 6047055 to 6047080 25 + TSS region transcription start site region 154541
Tssr154542 19 6047081 to 6047103 22 + TSS region transcription start site region 154542
Tssr157818 19 6047410 to 6047424 14 - TSS region transcription start site region 157818
Tssr154543 19 6050630 to 6050653 23 + TSS region transcription start site region 154543
Mir6988 19 6051334 to 6051392 58 + miRNA gene microRNA 6988
Tssr154544 19 6051392 to 6051406 14 + TSS region transcription start site region 154544