MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 19:59264354-59426502

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17 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Slc18a2	19	59260878 to 59296012	35134	+	protein coding gene	solute carrier family 18 (vesicular monoamine), member 2
Tssr157339	19	59284214 to 59284238	24	+	TSS region	transcription start site region 157339
Pdzd8	19	59296084 to 59345780	49696	-	protein coding gene	PDZ domain containing 8
Tssr160007	19	59296901 to 59296910	9	-	TSS region	transcription start site region 160007
Tssr160008	19	59301413 to 59301456	43	-	TSS region	transcription start site region 160008
Tssr160009	19	59313955 to 59313957	2	-	TSS region	transcription start site region 160009
Tssr157340	19	59322287 to 59322288	1	+	TSS region	transcription start site region 157340
Rps12-ps3	19	59322290 to 59322783	493	+	pseudogene	ribosomal protein S12, pseudogene 3
Cpgi11124	19	59344354 to 59346502	2148		CpG island	CpG island 11124
Tssr157341	19	59344493 to 59344512	19	+	TSS region	transcription start site region 157341
Tssr160010	19	59345224 to 59345236	12	-	TSS region	transcription start site region 160010
Tssr160011	19	59345538 to 59345558	20	-	TSS region	transcription start site region 160011
Tssr160012	19	59345746 to 59345853	107	-	TSS region	transcription start site region 160012
1700022C07Rik	19	59345907 to 59346674	767		unclassified gene	RIKEN cDNA 1700022C07 gene
Tssr160013	19	59350704 to 59350722	18	-	TSS region	transcription start site region 160013
Gm33756	19	59389312 to 59397591	8279	+	lincRNA gene	predicted gene, 33756
Emx2os	19	59425104 to 59458635	33531	-	antisense lncRNA gene	Emx2 opposite strand/antisense transcript (non-protein coding)