Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:59160878-59396012

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11116 19 59166050 to 59167106 1056 CpG island CpG island 11116
Vax1 19 59166187 to 59170056 3869 - protein coding gene ventral anterior homeobox 1
Cpgi11117 19 59168418 to 59168709 291 CpG island CpG island 11117
Cpgi11118 19 59169054 to 59170542 1488 CpG island CpG island 11118
Tssr160005 19 59170385 to 59170405 20 - TSS region transcription start site region 160005
Tssr160006 19 59171488 to 59171492 4 - TSS region transcription start site region 160006
4930442E04Rik 19 59171624 to 59184456 12832 + lncRNA gene RIKEN cDNA 4930442E04 gene
Cpgi11119 19 59171631 to 59172371 740 CpG island CpG island 11119
Tssr157335 19 59171744 to 59171749 5 + TSS region transcription start site region 157335
Tssr157336 19 59171775 to 59171786 11 + TSS region transcription start site region 157336
Cpgi11120 19 59193915 to 59194568 653 CpG island CpG island 11120
Kcnk18 19 59219648 to 59237370 17722 + protein coding gene potassium channel, subfamily K, member 18
Cpgi11121 19 59235193 to 59235457 264 CpG island CpG island 11121
Cpgi11122 19 59239524 to 59239745 221 CpG island CpG island 11122
Gm29261 19 59259512 to 59261419 1907 - antisense lncRNA gene predicted gene 29261
Cpgi11123 19 59260744 to 59261612 868 CpG island CpG island 11123
Slc18a2 19 59260878 to 59296012 35134 + protein coding gene solute carrier family 18 (vesicular monoamine), member 2
Tssr157337 19 59260889 to 59260901 12 + TSS region transcription start site region 157337
Tssr157338 19 59260915 to 59260932 17 + TSS region transcription start site region 157338
Tssr157339 19 59284214 to 59284238 24 + TSS region transcription start site region 157339
Pdzd8 19 59296084 to 59345780 49696 - protein coding gene PDZ domain containing 8
Tssr160007 19 59296901 to 59296910 9 - TSS region transcription start site region 160007
Tssr160008 19 59301413 to 59301456 43 - TSS region transcription start site region 160008
Tssr160009 19 59313955 to 59313957 2 - TSS region transcription start site region 160009
Tssr157340 19 59322287 to 59322288 1 + TSS region transcription start site region 157340
Rps12-ps3 19 59322290 to 59322783 493 + pseudogene ribosomal protein S12, pseudogene 3
Cpgi11124 19 59344354 to 59346502 2148 CpG island CpG island 11124
Tssr157341 19 59344493 to 59344512 19 + TSS region transcription start site region 157341
Tssr160010 19 59345224 to 59345236 12 - TSS region transcription start site region 160010
Tssr160011 19 59345538 to 59345558 20 - TSS region transcription start site region 160011
Tssr160012 19 59345746 to 59345853 107 - TSS region transcription start site region 160012
1700022C07Rik 19 59345907 to 59346674 767 unclassified gene RIKEN cDNA 1700022C07 gene
Tssr160013 19 59350704 to 59350722 18 - TSS region transcription start site region 160013
Gm33756 19 59389312 to 59397591 8279 + lincRNA gene predicted gene, 33756