Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:58942009-60438459

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Led3 19 51099940 to 59135440 8035500 QTL late embryonic death 3
Sluc35 19 55387618 to 59135440 3747822 QTL susceptibility to lung cancer 35
Cpgi11114 19 58943023 to 58944029 1006 CpG island CpG island 11114
Tssr157328 19 58943384 to 58943410 26 + TSS region transcription start site region 157328
Tssr157329 19 58943413 to 58943431 18 + TSS region transcription start site region 157329
Eno4 19 58943425 to 58971421 27996 + protein coding gene enolase 4
Tssr157330 19 58943432 to 58943441 9 + TSS region transcription start site region 157330
Tssr159989 19 58943557 to 58943572 15 - TSS region transcription start site region 159989
Tssr159990 19 58943576 to 58943593 17 - TSS region transcription start site region 159990
Tssr159991 19 58943594 to 58943648 54 - TSS region transcription start site region 159991
Shtn1 19 58973358 to 59076069 102711 - protein coding gene shootin 1
Tssr157331 19 58980118 to 58980127 9 + TSS region transcription start site region 157331
Tssr159992 19 58982935 to 58982949 14 - TSS region transcription start site region 159992
Tssr159993 19 58987984 to 58987999 15 - TSS region transcription start site region 159993
Tssr159994 19 58988059 to 58988068 9 - TSS region transcription start site region 159994
Tssr159995 19 58991711 to 58991737 26 - TSS region transcription start site region 159995
Tssr159996 19 59031618 to 59031659 41 - TSS region transcription start site region 159996
Tssr159997 19 59041918 to 59041935 17 - TSS region transcription start site region 159997
Tssr159998 19 59041953 to 59041970 17 - TSS region transcription start site region 159998
Cpgi11115 19 59075022 to 59076072 1050 CpG island CpG island 11115
Tssr157332 19 59075031 to 59075097 66 + TSS region transcription start site region 157332
Tssr159999 19 59075501 to 59075522 21 - TSS region transcription start site region 159999
Tssr160000 19 59075530 to 59075537 7 - TSS region transcription start site region 160000
Tssr160001 19 59075583 to 59075592 9 - TSS region transcription start site region 160001
Tssr160002 19 59075610 to 59075644 34 - TSS region transcription start site region 160002
Tssr160003 19 59076264 to 59076281 17 - TSS region transcription start site region 160003
Tssr160004 19 59076284 to 59076320 36 - TSS region transcription start site region 160004
Tssr157333 19 59081437 to 59081451 14 + TSS region transcription start site region 157333
Tssr157334 19 59081610 to 59081646 36 + TSS region transcription start site region 157334
Gm9276 19 59087487 to 59089034 1547 + pseudogene predicted gene 9276
D19Mit137 19 59135322 to 59135440 118 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 137
Cpgi11116 19 59166050 to 59167106 1056 CpG island CpG island 11116
Vax1 19 59166187 to 59170056 3869 - protein coding gene ventral anterior homeobox 1
Cpgi11117 19 59168418 to 59168709 291 CpG island CpG island 11117
Cpgi11118 19 59169054 to 59170542 1488 CpG island CpG island 11118
Tssr160005 19 59170385 to 59170405 20 - TSS region transcription start site region 160005
Tssr160006 19 59171488 to 59171492 4 - TSS region transcription start site region 160006
4930442E04Rik 19 59171624 to 59184456 12832 + lncRNA gene RIKEN cDNA 4930442E04 gene
Cpgi11119 19 59171631 to 59172371 740 CpG island CpG island 11119
Tssr157335 19 59171744 to 59171749 5 + TSS region transcription start site region 157335
Tssr157336 19 59171775 to 59171786 11 + TSS region transcription start site region 157336
Cpgi11120 19 59193915 to 59194568 653 CpG island CpG island 11120
Kcnk18 19 59219648 to 59237370 17722 + protein coding gene potassium channel, subfamily K, member 18
Cpgi11121 19 59235193 to 59235457 264 CpG island CpG island 11121
Cpgi11122 19 59239524 to 59239745 221 CpG island CpG island 11122
Gm29261 19 59259512 to 59261419 1907 - antisense lncRNA gene predicted gene 29261
Cpgi11123 19 59260744 to 59261612 868 CpG island CpG island 11123
Slc18a2 19 59260878 to 59296012 35134 + protein coding gene solute carrier family 18 (vesicular monoamine), member 2
Tssr157337 19 59260889 to 59260901 12 + TSS region transcription start site region 157337
Tssr157338 19 59260915 to 59260932 17 + TSS region transcription start site region 157338
Tssr157339 19 59284214 to 59284238 24 + TSS region transcription start site region 157339
Pdzd8 19 59296084 to 59345780 49696 - protein coding gene PDZ domain containing 8
Tssr160007 19 59296901 to 59296910 9 - TSS region transcription start site region 160007
Tssr160008 19 59301413 to 59301456 43 - TSS region transcription start site region 160008
Tssr160009 19 59313955 to 59313957 2 - TSS region transcription start site region 160009
Tssr157340 19 59322287 to 59322288 1 + TSS region transcription start site region 157340
Rps12-ps3 19 59322290 to 59322783 493 + pseudogene ribosomal protein S12, pseudogene 3
Cpgi11124 19 59344354 to 59346502 2148 CpG island CpG island 11124
Tssr157341 19 59344493 to 59344512 19 + TSS region transcription start site region 157341
Tssr160010 19 59345224 to 59345236 12 - TSS region transcription start site region 160010
Tssr160011 19 59345538 to 59345558 20 - TSS region transcription start site region 160011
Tssr160012 19 59345746 to 59345853 107 - TSS region transcription start site region 160012
1700022C07Rik 19 59345907 to 59346674 767 unclassified gene RIKEN cDNA 1700022C07 gene
Tssr160013 19 59350704 to 59350722 18 - TSS region transcription start site region 160013
Gm33756 19 59389312 to 59397591 8279 + lincRNA gene predicted gene, 33756
Emx2os 19 59425104 to 59458635 33531 - antisense lncRNA gene Emx2 opposite strand/antisense transcript (non-protein coding)
Cpgi11125 19 59451325 to 59451979 654 CpG island CpG island 11125
Cpgi11126 19 59454228 to 59454511 283 CpG island CpG island 11126
Cpgi11127 19 59457931 to 59460301 2370 CpG island CpG island 11127
Tssr157342 19 59458121 to 59458133 12 + TSS region transcription start site region 157342
Tssr160014 19 59458251 to 59458267 16 - TSS region transcription start site region 160014
Tssr160015 19 59458274 to 59458320 46 - TSS region transcription start site region 160015
Tssr157343 19 59458425 to 59458450 25 + TSS region transcription start site region 157343
Tssr160016 19 59458494 to 59458577 83 - TSS region transcription start site region 160016
Emx2 19 59458640 to 59465357 6717 + protein coding gene empty spiracles homeobox 2
Tssr157344 19 59458649 to 59458662 13 + TSS region transcription start site region 157344
Tssr157345 19 59458673 to 59458695 22 + TSS region transcription start site region 157345
Tssr157346 19 59458716 to 59458727 11 + TSS region transcription start site region 157346
Tssr157347 19 59458731 to 59458781 50 + TSS region transcription start site region 157347
Tssr157348 19 59458939 to 59458980 41 + TSS region transcription start site region 157348
Tssr157349 19 59459105 to 59459138 33 + TSS region transcription start site region 157349
Tssr157350 19 59459518 to 59459556 38 + TSS region transcription start site region 157350
Tssr157351 19 59459562 to 59459593 31 + TSS region transcription start site region 157351
Cpgi11128 19 59460906 to 59461114 208 CpG island CpG island 11128
Cpgi11129 19 59461533 to 59461967 434 CpG island CpG island 11129
Cpgi11130 19 59464183 to 59464348 165 CpG island CpG island 11130
Cpgi11131 19 59467080 to 59467648 568 CpG island CpG island 11131
Cpgi11132 19 59469005 to 59469496 491 CpG island CpG island 11132
2700089I24Rik 19 59493136 to 59559391 66255 + lincRNA gene RIKEN cDNA 2700089I24 gene
Gm18161 19 59540406 to 59540978 572 + pseudogene predicted gene, 18161
D19Mit71 19 59598427 to 59598562 135 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 71
Pgia12 19 59598427 to 59598562 135 QTL proteoglycan induced arthritis 12
Gm19956 19 59654737 to 59669791 15054 + lncRNA gene predicted gene, 19956
D19Mit92 19 59665024 to 59665225 201 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 92
D19Mit76 19 59665026 to 59665225 199 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 76
Gm41878 19 59679014 to 59707583 28569 - lncRNA gene predicted gene, 41878
Gm46661 19 59682009 to 59698459 16450 + lncRNA gene predicted gene, 46661
Gm46662 19 59760441 to 59822672 62231 - lncRNA gene predicted gene, 46662
Tssr157352 19 59837800 to 59837801 1 + TSS region transcription start site region 157352
Gm46660 19 59875343 to 59890238 14895 - lncRNA gene predicted gene, 46660
Tssr160017 19 59879223 to 59879245 22 - TSS region transcription start site region 160017
D19Mit108 19 59882973 to 59883082 109 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 108
Gm17203 19 59896241 to 59901062 4821 - lincRNA gene predicted gene 17203
Rab11fip2 19 59902884 to 59943654 40770 - protein coding gene RAB11 family interacting protein 2 (class I)
Tssr160018 19 59914060 to 59914083 23 - TSS region transcription start site region 160018
D19Dcr70 19 59926229 to 59926325 96 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 70
Cpgi11133 19 59942952 to 59943998 1046 CpG island CpG island 11133
Tssr160019 19 59943074 to 59943100 26 - TSS region transcription start site region 160019
Tssr160020 19 59943568 to 59943579 11 - TSS region transcription start site region 160020
Tssr160021 19 59943582 to 59943595 13 - TSS region transcription start site region 160021
Tssr160022 19 59943596 to 59943638 42 - TSS region transcription start site region 160022
Tssr160023 19 59943647 to 59943678 31 - TSS region transcription start site region 160023
Gm4219 19 59943722 to 59948398 4676 + unclassified non-coding RNA gene predicted gene 4219
Gm41879 19 60035900 to 60039033 3133 - lncRNA gene predicted gene, 41879
Gm41880 19 60040385 to 60050388 10003 - lncRNA gene predicted gene, 41880
Csf1r-ps 19 60079370 to 60081998 2628 + pseudogene colony stimulating factor 1 receptor (granulocyte), pseudogene
Gm46663 19 60107521 to 60116299 8778 - lncRNA gene predicted gene, 46663
Gm41881 19 60135549 to 60140383 4834 - lncRNA gene predicted gene, 41881
Tssr157353 19 60144591 to 60144602 11 + TSS region transcription start site region 157353
E330013P04Rik 19 60144675 to 60162591 17916 + lincRNA gene RIKEN cDNA E330013P04 gene
Tssr157354 19 60144682 to 60144697 15 + TSS region transcription start site region 157354
Fam204a 19 60198586 to 60226697 28111 - protein coding gene family with sequence similarity 204, member A
Tssr160024 19 60224899 to 60224905 6 - TSS region transcription start site region 160024
Cpgi11134 19 60226177 to 60226809 632 CpG island CpG island 11134
4933412A08Rik 19 60226334 to 60227678 1344 + pseudogene RIKEN cDNA 4933412A08 gene
Tssr160025 19 60226638 to 60226649 11 - TSS region transcription start site region 160025
Tssr160026 19 60226666 to 60226706 40 - TSS region transcription start site region 160026
Gm28351 19 60241853 to 60243581 1728 + lincRNA gene predicted gene 28351
D19Dcr71 19 60278894 to 60278989 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 71
Gm41882 19 60310847 to 60325262 14415 - lncRNA gene predicted gene, 41882
Gm34300 19 60375885 to 60387027 11142 - lncRNA gene predicted gene, 34300