Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:58850031-59300097

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Led3 19 51099940 to 59135440 8035500 QTL late embryonic death 3
Sluc35 19 55387618 to 59135440 3747822 QTL susceptibility to lung cancer 35
Hspa12a 19 58795751 to 58860984 65233 - protein coding gene heat shock protein 12A
Tssr5573 19 58860001 to 58860026 25 + TSS region transcription start site region 5573
Cpgi11113 19 58860676 to 58861405 729 CpG island CpG island 11113
Tssr159986 19 58860948 to 58860970 22 - TSS region transcription start site region 159986
Tssr159987 19 58860975 to 58860997 22 - TSS region transcription start site region 159987
Tssr159988 19 58861013 to 58861022 9 - TSS region transcription start site region 159988
4930433M22Rik 19 58873929 to 58875137 1208 unclassified gene RIKEN cDNA 4930433M22 gene
Mir3086 19 58911673 to 58911759 86 - miRNA gene microRNA 3086
Cpgi11114 19 58943023 to 58944029 1006 CpG island CpG island 11114
Tssr157328 19 58943384 to 58943410 26 + TSS region transcription start site region 157328
Tssr157329 19 58943413 to 58943431 18 + TSS region transcription start site region 157329
Eno4 19 58943425 to 58971421 27996 + protein coding gene enolase 4
Tssr157330 19 58943432 to 58943441 9 + TSS region transcription start site region 157330
Tssr159989 19 58943557 to 58943572 15 - TSS region transcription start site region 159989
Tssr159990 19 58943576 to 58943593 17 - TSS region transcription start site region 159990
Tssr159991 19 58943594 to 58943648 54 - TSS region transcription start site region 159991
Shtn1 19 58973358 to 59076069 102711 - protein coding gene shootin 1
Tssr157331 19 58980118 to 58980127 9 + TSS region transcription start site region 157331
Tssr159992 19 58982935 to 58982949 14 - TSS region transcription start site region 159992
Tssr159993 19 58987984 to 58987999 15 - TSS region transcription start site region 159993
Tssr159994 19 58988059 to 58988068 9 - TSS region transcription start site region 159994
Tssr159995 19 58991711 to 58991737 26 - TSS region transcription start site region 159995
Tssr159996 19 59031618 to 59031659 41 - TSS region transcription start site region 159996
Tssr159997 19 59041918 to 59041935 17 - TSS region transcription start site region 159997
Tssr159998 19 59041953 to 59041970 17 - TSS region transcription start site region 159998
Cpgi11115 19 59075022 to 59076072 1050 CpG island CpG island 11115
Tssr157332 19 59075031 to 59075097 66 + TSS region transcription start site region 157332
Tssr159999 19 59075501 to 59075522 21 - TSS region transcription start site region 159999
Tssr160000 19 59075530 to 59075537 7 - TSS region transcription start site region 160000
Tssr160001 19 59075583 to 59075592 9 - TSS region transcription start site region 160001
Tssr160002 19 59075610 to 59075644 34 - TSS region transcription start site region 160002
Tssr160003 19 59076264 to 59076281 17 - TSS region transcription start site region 160003
Tssr160004 19 59076284 to 59076320 36 - TSS region transcription start site region 160004
Tssr157333 19 59081437 to 59081451 14 + TSS region transcription start site region 157333
Tssr157334 19 59081610 to 59081646 36 + TSS region transcription start site region 157334
Gm9276 19 59087487 to 59089034 1547 + pseudogene predicted gene 9276
D19Mit137 19 59135322 to 59135440 118 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 137
Cpgi11116 19 59166050 to 59167106 1056 CpG island CpG island 11116
Vax1 19 59166187 to 59170056 3869 - protein coding gene ventral anterior homeobox 1
Cpgi11117 19 59168418 to 59168709 291 CpG island CpG island 11117
Cpgi11118 19 59169054 to 59170542 1488 CpG island CpG island 11118
Tssr160005 19 59170385 to 59170405 20 - TSS region transcription start site region 160005
Tssr160006 19 59171488 to 59171492 4 - TSS region transcription start site region 160006
4930442E04Rik 19 59171624 to 59184456 12832 + lncRNA gene RIKEN cDNA 4930442E04 gene
Cpgi11119 19 59171631 to 59172371 740 CpG island CpG island 11119
Tssr157335 19 59171744 to 59171749 5 + TSS region transcription start site region 157335
Tssr157336 19 59171775 to 59171786 11 + TSS region transcription start site region 157336
Cpgi11120 19 59193915 to 59194568 653 CpG island CpG island 11120
Kcnk18 19 59219648 to 59237370 17722 + protein coding gene potassium channel, subfamily K, member 18
Cpgi11121 19 59235193 to 59235457 264 CpG island CpG island 11121
Cpgi11122 19 59239524 to 59239745 221 CpG island CpG island 11122
Gm29261 19 59259512 to 59261419 1907 - antisense lncRNA gene predicted gene 29261
Cpgi11123 19 59260744 to 59261612 868 CpG island CpG island 11123
Slc18a2 19 59260878 to 59296012 35134 + protein coding gene solute carrier family 18 (vesicular monoamine), member 2
Tssr157337 19 59260889 to 59260901 12 + TSS region transcription start site region 157337
Tssr157338 19 59260915 to 59260932 17 + TSS region transcription start site region 157338
Tssr157339 19 59284214 to 59284238 24 + TSS region transcription start site region 157339
Pdzd8 19 59296084 to 59345780 49696 - protein coding gene PDZ domain containing 8
Tssr160007 19 59296901 to 59296910 9 - TSS region transcription start site region 160007