Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:58572757-63882761

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419 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Led3 19 51099940 to 59135440 8035500 QTL late embryonic death 3
Sluc35 19 55387618 to 59135440 3747822 QTL susceptibility to lung cancer 35
Tssr157255 19 58606324 to 58606333 9 + TSS region transcription start site region 157255
1810007D17Rik 19 58606329 to 58629753 23424 + lincRNA gene RIKEN cDNA 1810007D17 gene
Tssr157256 19 58606361 to 58606370 9 + TSS region transcription start site region 157256
Tssr157257 19 58606377 to 58606382 5 + TSS region transcription start site region 157257
Cpgi11110 19 58622413 to 58622787 374 CpG island CpG island 11110
Tssr5570 19 58650364 to 58650370 6 + TSS region transcription start site region 5570
Tssr157258 19 58670173 to 58670207 34 + TSS region transcription start site region 157258
Tssr157259 19 58670350 to 58670355 5 + TSS region transcription start site region 157259
Tssr157260 19 58670358 to 58670368 10 + TSS region transcription start site region 157260
Pnlip 19 58670365 to 58681786 11421 + protein coding gene pancreatic lipase
Tssr157261 19 58670425 to 58670430 5 + TSS region transcription start site region 157261
Tssr157262 19 58670433 to 58670461 28 + TSS region transcription start site region 157262
Tssr159956 19 58670596 to 58670598 2 - TSS region transcription start site region 159956
Tssr157263 19 58671701 to 58671721 20 + TSS region transcription start site region 157263
Tssr157264 19 58671729 to 58671779 50 + TSS region transcription start site region 157264
Tssr159957 19 58671732 to 58671739 7 - TSS region transcription start site region 159957
Tssr157265 19 58671785 to 58671831 46 + TSS region transcription start site region 157265
Tssr159958 19 58671832 to 58671866 34 - TSS region transcription start site region 159958
Tssr157266 19 58673072 to 58673085 13 + TSS region transcription start site region 157266
Tssr157267 19 58673086 to 58673104 18 + TSS region transcription start site region 157267
Tssr159959 19 58673115 to 58673137 22 - TSS region transcription start site region 159959
Tssr5571 19 58673121 to 58673127 6 + TSS region transcription start site region 5571
Tssr157268 19 58673144 to 58673158 14 + TSS region transcription start site region 157268
Tssr159960 19 58673169 to 58673185 16 - TSS region transcription start site region 159960
Tssr157269 19 58673741 to 58673751 10 + TSS region transcription start site region 157269
Tssr157270 19 58673804 to 58673825 21 + TSS region transcription start site region 157270
Tssr157271 19 58675056 to 58675065 9 + TSS region transcription start site region 157271
Tssr157272 19 58675067 to 58675081 14 + TSS region transcription start site region 157272
Tssr159961 19 58675148 to 58675170 22 - TSS region transcription start site region 159961
Cpgi11111 19 58675967 to 58676285 318 CpG island CpG island 11111
Tssr157273 19 58676198 to 58676228 30 + TSS region transcription start site region 157273
Tssr157274 19 58676230 to 58676231 1 + TSS region transcription start site region 157274
Tssr157275 19 58676250 to 58676263 13 + TSS region transcription start site region 157275
Tssr157276 19 58676273 to 58676289 16 + TSS region transcription start site region 157276
Tssr157277 19 58676514 to 58676522 8 + TSS region transcription start site region 157277
Tssr157278 19 58677136 to 58677150 14 + TSS region transcription start site region 157278
Tssr157279 19 58677153 to 58677168 15 + TSS region transcription start site region 157279
Tssr157280 19 58677169 to 58677217 48 + TSS region transcription start site region 157280
Tssr157281 19 58679524 to 58679537 13 + TSS region transcription start site region 157281
Tssr157282 19 58679542 to 58679557 15 + TSS region transcription start site region 157282
Tssr157283 19 58679744 to 58679749 5 + TSS region transcription start site region 157283
Tssr157284 19 58680034 to 58680057 23 + TSS region transcription start site region 157284
Tssr157285 19 58680734 to 58680762 28 + TSS region transcription start site region 157285
Tssr157286 19 58680805 to 58680809 4 + TSS region transcription start site region 157286
Tssr157287 19 58680822 to 58680837 15 + TSS region transcription start site region 157287
Tssr157288 19 58681746 to 58681757 11 + TSS region transcription start site region 157288
Tssr159962 19 58681784 to 58681786 2 - TSS region transcription start site region 159962
1810035K13Rik 19 58695506 to 58696178 672 + lncRNA gene RIKEN cDNA 1810035K13 gene
Tssr157289 19 58698915 to 58698917 2 + TSS region transcription start site region 157289
1810018F18Rik 19 58698917 to 58701323 2406 + lincRNA gene RIKEN cDNA 1810018F18 gene
Tssr157290 19 58707626 to 58707633 7 + TSS region transcription start site region 157290
Tssr157291 19 58728006 to 58728015 9 + TSS region transcription start site region 157291
Tssr157292 19 58728060 to 58728069 9 + TSS region transcription start site region 157292
Tssr157293 19 58728129 to 58728163 34 + TSS region transcription start site region 157293
Pnliprp1 19 58728887 to 58744169 15282 + protein coding gene pancreatic lipase related protein 1
Tssr157294 19 58728964 to 58728981 17 + TSS region transcription start site region 157294
Tssr157295 19 58729300 to 58729335 35 + TSS region transcription start site region 157295
Tssr157296 19 58729891 to 58729902 11 + TSS region transcription start site region 157296
Tssr157297 19 58729971 to 58730091 120 + TSS region transcription start site region 157297
Tssr159963 19 58730000 to 58730017 17 - TSS region transcription start site region 159963
Tssr159964 19 58730053 to 58730065 12 - TSS region transcription start site region 159964
Tssr159965 19 58730082 to 58730087 5 - TSS region transcription start site region 159965
Tssr159966 19 58730105 to 58730133 28 - TSS region transcription start site region 159966
Tssr157298 19 58730466 to 58730563 97 + TSS region transcription start site region 157298
Tssr159967 19 58730496 to 58730524 28 - TSS region transcription start site region 159967
Tssr159968 19 58730564 to 58730582 18 - TSS region transcription start site region 159968
Tssr157299 19 58732018 to 58732027 9 + TSS region transcription start site region 157299
Tssr157300 19 58732031 to 58732052 21 + TSS region transcription start site region 157300
Tssr157301 19 58732062 to 58732094 32 + TSS region transcription start site region 157301
Tssr5572 19 58732087 to 58732105 18 - TSS region transcription start site region 5572
Tssr157302 19 58732100 to 58732121 21 + TSS region transcription start site region 157302
Tssr157303 19 58733344 to 58733408 64 + TSS region transcription start site region 157303
Tssr157304 19 58733419 to 58733436 17 + TSS region transcription start site region 157304
Tssr157305 19 58734659 to 58734733 74 + TSS region transcription start site region 157305
Tssr159969 19 58734676 to 58734700 24 - TSS region transcription start site region 159969
Tssr157306 19 58734892 to 58734951 59 + TSS region transcription start site region 157306
Tssr159970 19 58734939 to 58734954 15 - TSS region transcription start site region 159970
Tssr157307 19 58736994 to 58737027 33 + TSS region transcription start site region 157307
Tssr157308 19 58737028 to 58737045 17 + TSS region transcription start site region 157308
Tssr159971 19 58737039 to 58737062 23 - TSS region transcription start site region 159971
Tssr157309 19 58737059 to 58737080 21 + TSS region transcription start site region 157309
Tssr157310 19 58738135 to 58738256 121 + TSS region transcription start site region 157310
Tssr157311 19 58738272 to 58738282 10 + TSS region transcription start site region 157311
Tssr157312 19 58738303 to 58738312 9 + TSS region transcription start site region 157312
Tssr157313 19 58738354 to 58738365 11 + TSS region transcription start site region 157313
Tssr157314 19 58739445 to 58739451 6 + TSS region transcription start site region 157314
Tssr157315 19 58740441 to 58740485 44 + TSS region transcription start site region 157315
Tssr157316 19 58740487 to 58740505 18 + TSS region transcription start site region 157316
Tssr157317 19 58740514 to 58740528 14 + TSS region transcription start site region 157317
Tssr157318 19 58741077 to 58741125 48 + TSS region transcription start site region 157318
Tssr157319 19 58741210 to 58741224 14 + TSS region transcription start site region 157319
1810073G21Rik 19 58742042 to 58743760 1718 unclassified gene RIKEN cDNA 1810073G21 gene
Tssr157320 19 58744036 to 58744066 30 + TSS region transcription start site region 157320
Tssr157321 19 58744072 to 58744094 22 + TSS region transcription start site region 157321
Tssr159972 19 58744073 to 58744086 13 - TSS region transcription start site region 159972
Tssr157322 19 58744095 to 58744113 18 + TSS region transcription start site region 157322
Tssr157323 19 58744114 to 58744125 11 + TSS region transcription start site region 157323
Tssr157324 19 58744131 to 58744142 11 + TSS region transcription start site region 157324
Tssr159973 19 58744158 to 58744170 12 - TSS region transcription start site region 159973
D19Mit138 19 58752962 to 58753104 142 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology-138
Tssr157325 19 58759685 to 58759698 13 + TSS region transcription start site region 157325
Tssr157326 19 58759700 to 58759745 45 + TSS region transcription start site region 157326
Pnliprp2 19 58759723 to 58777533 17810 + protein coding gene pancreatic lipase-related protein 2
1700019N19Rik 19 58785803 to 58794414 8611 - protein coding gene RIKEN cDNA 1700019N19 gene
Gm22561 19 58786608 to 58786691 83 - unclassified non-coding RNA gene predicted gene, 22561
Gm17150 19 58790195 to 58790575 380 + pseudogene predicted gene 17150
Tssr159974 19 58792794 to 58792812 18 - TSS region transcription start site region 159974
Tssr159975 19 58792817 to 58792832 15 - TSS region transcription start site region 159975
Tssr159976 19 58793268 to 58793276 8 - TSS region transcription start site region 159976
Tssr159977 19 58793277 to 58793298 21 - TSS region transcription start site region 159977
Tssr159978 19 58793300 to 58793307 7 - TSS region transcription start site region 159978
Tssr159979 19 58794400 to 58794428 28 - TSS region transcription start site region 159979
Tssr159980 19 58794436 to 58794455 19 - TSS region transcription start site region 159980
Gm41877 19 58794515 to 58802121 7606 + lncRNA gene predicted gene, 41877
Hspa12a 19 58795751 to 58860984 65233 - protein coding gene heat shock protein 12A
Cpgi11112 19 58799425 to 58799921 496 CpG island CpG island 11112
Tssr159981 19 58807528 to 58807533 5 - TSS region transcription start site region 159981
Tssr157327 19 58818864 to 58818904 40 + TSS region transcription start site region 157327
Tssr159982 19 58822438 to 58822447 9 - TSS region transcription start site region 159982
Tssr159983 19 58822451 to 58822469 18 - TSS region transcription start site region 159983
Tssr159984 19 58822521 to 58822532 11 - TSS region transcription start site region 159984
Tssr159985 19 58822536 to 58822558 22 - TSS region transcription start site region 159985
Tssr5573 19 58860001 to 58860026 25 + TSS region transcription start site region 5573
Cpgi11113 19 58860676 to 58861405 729 CpG island CpG island 11113
Tssr159986 19 58860948 to 58860970 22 - TSS region transcription start site region 159986
Tssr159987 19 58860975 to 58860997 22 - TSS region transcription start site region 159987
Tssr159988 19 58861013 to 58861022 9 - TSS region transcription start site region 159988
4930433M22Rik 19 58873929 to 58875137 1208 unclassified gene RIKEN cDNA 4930433M22 gene
Mir3086 19 58911673 to 58911759 86 - miRNA gene microRNA 3086
Cpgi11114 19 58943023 to 58944029 1006 CpG island CpG island 11114
Tssr157328 19 58943384 to 58943410 26 + TSS region transcription start site region 157328
Tssr157329 19 58943413 to 58943431 18 + TSS region transcription start site region 157329
Eno4 19 58943425 to 58971421 27996 + protein coding gene enolase 4
Tssr157330 19 58943432 to 58943441 9 + TSS region transcription start site region 157330
Tssr159989 19 58943557 to 58943572 15 - TSS region transcription start site region 159989
Tssr159990 19 58943576 to 58943593 17 - TSS region transcription start site region 159990
Tssr159991 19 58943594 to 58943648 54 - TSS region transcription start site region 159991
Shtn1 19 58973358 to 59076069 102711 - protein coding gene shootin 1
Tssr157331 19 58980118 to 58980127 9 + TSS region transcription start site region 157331
Tssr159992 19 58982935 to 58982949 14 - TSS region transcription start site region 159992
Tssr159993 19 58987984 to 58987999 15 - TSS region transcription start site region 159993
Tssr159994 19 58988059 to 58988068 9 - TSS region transcription start site region 159994
Tssr159995 19 58991711 to 58991737 26 - TSS region transcription start site region 159995
Tssr159996 19 59031618 to 59031659 41 - TSS region transcription start site region 159996
Tssr159997 19 59041918 to 59041935 17 - TSS region transcription start site region 159997
Tssr159998 19 59041953 to 59041970 17 - TSS region transcription start site region 159998
Cpgi11115 19 59075022 to 59076072 1050 CpG island CpG island 11115
Tssr157332 19 59075031 to 59075097 66 + TSS region transcription start site region 157332
Tssr159999 19 59075501 to 59075522 21 - TSS region transcription start site region 159999
Tssr160000 19 59075530 to 59075537 7 - TSS region transcription start site region 160000
Tssr160001 19 59075583 to 59075592 9 - TSS region transcription start site region 160001
Tssr160002 19 59075610 to 59075644 34 - TSS region transcription start site region 160002
Tssr160003 19 59076264 to 59076281 17 - TSS region transcription start site region 160003
Tssr160004 19 59076284 to 59076320 36 - TSS region transcription start site region 160004
Tssr157333 19 59081437 to 59081451 14 + TSS region transcription start site region 157333
Tssr157334 19 59081610 to 59081646 36 + TSS region transcription start site region 157334
Gm9276 19 59087487 to 59089034 1547 + pseudogene predicted gene 9276
D19Mit137 19 59135322 to 59135440 118 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 137
Cpgi11116 19 59166050 to 59167106 1056 CpG island CpG island 11116
Vax1 19 59166187 to 59170056 3869 - protein coding gene ventral anterior homeobox 1
Cpgi11117 19 59168418 to 59168709 291 CpG island CpG island 11117
Cpgi11118 19 59169054 to 59170542 1488 CpG island CpG island 11118
Tssr160005 19 59170385 to 59170405 20 - TSS region transcription start site region 160005
Tssr160006 19 59171488 to 59171492 4 - TSS region transcription start site region 160006
4930442E04Rik 19 59171624 to 59184456 12832 + lncRNA gene RIKEN cDNA 4930442E04 gene
Cpgi11119 19 59171631 to 59172371 740 CpG island CpG island 11119
Tssr157335 19 59171744 to 59171749 5 + TSS region transcription start site region 157335
Tssr157336 19 59171775 to 59171786 11 + TSS region transcription start site region 157336
Cpgi11120 19 59193915 to 59194568 653 CpG island CpG island 11120
Kcnk18 19 59219648 to 59237370 17722 + protein coding gene potassium channel, subfamily K, member 18
Cpgi11121 19 59235193 to 59235457 264 CpG island CpG island 11121
Cpgi11122 19 59239524 to 59239745 221 CpG island CpG island 11122
Gm29261 19 59259512 to 59261419 1907 - antisense lncRNA gene predicted gene 29261
Cpgi11123 19 59260744 to 59261612 868 CpG island CpG island 11123
Slc18a2 19 59260878 to 59296012 35134 + protein coding gene solute carrier family 18 (vesicular monoamine), member 2
Tssr157337 19 59260889 to 59260901 12 + TSS region transcription start site region 157337
Tssr157338 19 59260915 to 59260932 17 + TSS region transcription start site region 157338
Tssr157339 19 59284214 to 59284238 24 + TSS region transcription start site region 157339
Pdzd8 19 59296084 to 59345780 49696 - protein coding gene PDZ domain containing 8
Tssr160007 19 59296901 to 59296910 9 - TSS region transcription start site region 160007
Tssr160008 19 59301413 to 59301456 43 - TSS region transcription start site region 160008
Tssr160009 19 59313955 to 59313957 2 - TSS region transcription start site region 160009
Tssr157340 19 59322287 to 59322288 1 + TSS region transcription start site region 157340
Rps12-ps3 19 59322290 to 59322783 493 + pseudogene ribosomal protein S12, pseudogene 3
Cpgi11124 19 59344354 to 59346502 2148 CpG island CpG island 11124
Tssr157341 19 59344493 to 59344512 19 + TSS region transcription start site region 157341
Tssr160010 19 59345224 to 59345236 12 - TSS region transcription start site region 160010
Tssr160011 19 59345538 to 59345558 20 - TSS region transcription start site region 160011
Tssr160012 19 59345746 to 59345853 107 - TSS region transcription start site region 160012
1700022C07Rik 19 59345907 to 59346674 767 unclassified gene RIKEN cDNA 1700022C07 gene
Tssr160013 19 59350704 to 59350722 18 - TSS region transcription start site region 160013
Gm33756 19 59389312 to 59397591 8279 + lincRNA gene predicted gene, 33756
Emx2os 19 59425104 to 59458635 33531 - antisense lncRNA gene Emx2 opposite strand/antisense transcript (non-protein coding)
Cpgi11125 19 59451325 to 59451979 654 CpG island CpG island 11125
Cpgi11126 19 59454228 to 59454511 283 CpG island CpG island 11126
Cpgi11127 19 59457931 to 59460301 2370 CpG island CpG island 11127
Tssr157342 19 59458121 to 59458133 12 + TSS region transcription start site region 157342
Tssr160014 19 59458251 to 59458267 16 - TSS region transcription start site region 160014