Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:57336034-58408338

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
B230217O12Rik 19 57323385 to 57360775 37390 - lincRNA gene RIKEN cDNA B230217O12 gene
Tssr159930 19 57358465 to 57358485 20 - TSS region transcription start site region 159930
Tssr159931 19 57360115 to 57360130 15 - TSS region transcription start site region 159931
Cpgi11101 19 57360492 to 57361905 1413 CpG island CpG island 11101
Tssr159932 19 57360668 to 57360793 125 - TSS region transcription start site region 159932
Tssr157229 19 57360688 to 57360704 16 + TSS region transcription start site region 157229
Tssr157230 19 57360751 to 57360762 11 + TSS region transcription start site region 157230
Tssr159933 19 57360808 to 57360822 14 - TSS region transcription start site region 159933
Tssr157231 19 57360940 to 57360952 12 + TSS region transcription start site region 157231
Tssr157232 19 57360960 to 57360980 20 + TSS region transcription start site region 157232
Fam160b1 19 57361009 to 57389594 28585 + protein coding gene family with sequence similarity 160, member B1
Tssr157233 19 57361028 to 57361113 85 + TSS region transcription start site region 157233
Tssr157234 19 57361220 to 57361238 18 + TSS region transcription start site region 157234
D19Dcr66 19 57366875 to 57366970 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 66
2600017C09Rik 19 57404095 to 57404274 179 unclassified gene RIKEN cDNA 2600017C09 gene
Gm41874 19 57404678 to 57411272 6594 + lncRNA gene predicted gene, 41874
Cpgi11102 19 57411939 to 57412288 349 CpG island CpG island 11102
Tssr159934 19 57418588 to 57418597 9 - TSS region transcription start site region 159934
Cpgi11103 19 57425367 to 57425549 182 CpG island CpG island 11103
Cpgi11104 19 57439043 to 57439375 332 CpG island CpG island 11104
Cpgi11105 19 57452895 to 57453324 429 CpG island CpG island 11105
Tssr157235 19 57452900 to 57452926 26 + TSS region transcription start site region 157235
Trub1 19 57452906 to 57491005 38099 + protein coding gene TruB pseudouridine (psi) synthase family member 1
Tssr157236 19 57452928 to 57452947 19 + TSS region transcription start site region 157236
Gm26874 19 57459572 to 57461553 1981 - lincRNA gene predicted gene, 26874
Tssr157237 19 57477543 to 57477558 15 + TSS region transcription start site region 157237
Tssr157238 19 57477595 to 57477602 7 + TSS region transcription start site region 157238
6720468P15Rik 19 57508564 to 57512788 4224 + lncRNA gene RIKEN cDNA 6720468P15 gene
Tssr157239 19 57508582 to 57508597 15 + TSS region transcription start site region 157239
Gm32932 19 57522180 to 57531160 8980 + lncRNA gene predicted gene, 32932
Cpgi11106 19 57610120 to 57611891 1771 CpG island CpG island 11106
Tssr157240 19 57610945 to 57610963 18 + TSS region transcription start site region 157240
Tssr157241 19 57611020 to 57611079 59 + TSS region transcription start site region 157241
Atrnl1 19 57611034 to 58133338 522304 + protein coding gene attractin like 1
Tssr157242 19 57646261 to 57646266 5 + TSS region transcription start site region 157242
Tssr157243 19 57658961 to 57658969 8 + TSS region transcription start site region 157243
Tssr159935 19 57668089 to 57668108 19 - TSS region transcription start site region 159935
Tssr157244 19 57691366 to 57691372 6 + TSS region transcription start site region 157244
Tssr5567 19 57698181 to 57698183 2 + TSS region transcription start site region 5567
Tssr157245 19 57747600 to 57747613 13 + TSS region transcription start site region 157245
Cpgi11107 19 57756250 to 57756442 192 CpG island CpG island 11107
Eosnp3 19 57757132 to 57757132 0 QTL percent eosinophils 3
Tssr157246 19 57780568 to 57780572 4 + TSS region transcription start site region 157246
Tssr157247 19 57804671 to 57804677 6 + TSS region transcription start site region 157247
Tssr157248 19 57950534 to 57950545 11 + TSS region transcription start site region 157248
Tssr157249 19 57999109 to 57999115 6 + TSS region transcription start site region 157249
Gm32980 19 58022571 to 58031893 9322 - lncRNA gene predicted gene, 32980
Mir5623 19 58051167 to 58051236 69 + miRNA gene microRNA 5623
E430016L07Rik 19 58091817 to 58096030 4213 unclassified gene RIKEN cDNA E430016L07 gene
Tssr157250 19 58119825 to 58119828 3 + TSS region transcription start site region 157250
Tssr159936 19 58123708 to 58123715 7 - TSS region transcription start site region 159936
D19Dcr67 19 58136939 to 58137039 100 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 67
D19Dcr68 19 58137479 to 58137574 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 68
Tssr5568 19 58143877 to 58143889 12 - TSS region transcription start site region 5568
Tssr5569 19 58144019 to 58144036 17 + TSS region transcription start site region 5569
Tssr157251 19 58144043 to 58144056 13 + TSS region transcription start site region 157251
Gm16277 19 58204139 to 58236047 31908 + antisense lncRNA gene predicted gene 16277
Tssr157252 19 58231103 to 58231112 9 + TSS region transcription start site region 157252
Gm41875 19 58231333 to 58232284 951 - lncRNA gene predicted gene, 41875
D19Dcr69 19 58235352 to 58235447 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 69
Gfra1 19 58235604 to 58455909 220305 - protein coding gene glial cell line derived neurotrophic factor family receptor alpha 1
Gm46650 19 58280564 to 58294578 14014 - protein coding gene predicted gene, 46650
Gm10007 19 58296204 to 58300348 4144 + lncRNA gene predicted gene 10007
Tssr159937 19 58370398 to 58370401 3 - TSS region transcription start site region 159937
Tssr157253 19 58396193 to 58396201 8 + TSS region transcription start site region 157253