Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:5686707-5796729

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcnx3 19 5664635 to 5688908 24273 - protein coding gene pecanex homolog 3
Cpgi10468 19 5688045 to 5689083 1038 CpG island CpG island 10468
Tssr157626 19 5688540 to 5688590 50 - TSS region transcription start site region 157626
Tssr157627 19 5688614 to 5688706 92 - TSS region transcription start site region 157627
Tssr154475 19 5688723 to 5688770 47 + TSS region transcription start site region 154475
Tssr154476 19 5688778 to 5688797 19 + TSS region transcription start site region 154476
Map3k11 19 5689131 to 5702862 13731 + protein coding gene mitogen-activated protein kinase kinase kinase 11
Cpgi10469 19 5689487 to 5690707 1220 CpG island CpG island 10469
Tssr154477 19 5689745 to 5689823 78 + TSS region transcription start site region 154477
Tssr154478 19 5692852 to 5692874 22 + TSS region transcription start site region 154478
Cpgi10470 19 5695503 to 5696337 834 CpG island CpG island 10470
Tssr154479 19 5700770 to 5700795 25 + TSS region transcription start site region 154479
Kcnk7 19 5704367 to 5707101 2734 + protein coding gene potassium channel, subfamily K, member 7
Tssr154480 19 5704437 to 5704468 31 + TSS region transcription start site region 154480
Ehbp1l1 19 5707376 to 5726317 18941 - protein coding gene EH domain binding protein 1-like 1
Cpgi10471 19 5715883 to 5716530 647 CpG island CpG island 10471
Tssr157628 19 5719306 to 5719315 9 - TSS region transcription start site region 157628
Tssr157629 19 5720297 to 5720311 14 - TSS region transcription start site region 157629
Tssr157630 19 5720681 to 5720690 9 - TSS region transcription start site region 157630
Tssr157631 19 5720695 to 5720725 30 - TSS region transcription start site region 157631
Tssr157632 19 5721811 to 5721853 42 - TSS region transcription start site region 157632
Tssr154481 19 5724812 to 5724829 17 + TSS region transcription start site region 154481
Tssr154482 19 5724874 to 5724886 12 + TSS region transcription start site region 154482
Cpgi10472 19 5725953 to 5726559 606 CpG island CpG island 10472
Tssr157633 19 5726214 to 5726227 13 - TSS region transcription start site region 157633
Tssr157634 19 5726240 to 5726287 47 - TSS region transcription start site region 157634
Tssr154483 19 5727170 to 5727194 24 + TSS region transcription start site region 154483
Gm16538 19 5727206 to 5731627 4421 + antisense lncRNA gene predicted gene 16538
Tssr154484 19 5727211 to 5727225 14 + TSS region transcription start site region 154484
Fam89b 19 5728087 to 5729653 1566 - protein coding gene family with sequence similarity 89, member B
Cpgi10473 19 5729070 to 5730020 950 CpG island CpG island 10473
Tssr157635 19 5729357 to 5729416 59 - TSS region transcription start site region 157635
Tssr157636 19 5729512 to 5729530 18 - TSS region transcription start site region 157636
Tssr157637 19 5729618 to 5729700 82 - TSS region transcription start site region 157637
Sssca1 19 5730306 to 5731732 1426 - protein coding gene Sjogren syndrome/scleroderma autoantigen 1
Cpgi10474 19 5731141 to 5731938 797 CpG island CpG island 10474
Tssr157638 19 5731489 to 5731503 14 - TSS region transcription start site region 157638
Tssr157639 19 5731697 to 5731733 36 - TSS region transcription start site region 157639
Tssr154485 19 5740885 to 5740904 19 + TSS region transcription start site region 154485
Ltbp3 19 5740904 to 5758532 17628 + protein coding gene latent transforming growth factor beta binding protein 3
Tssr154486 19 5741300 to 5741325 25 + TSS region transcription start site region 154486
Cpgi10475 19 5741483 to 5742728 1245 CpG island CpG island 10475
Tssr154487 19 5741681 to 5741701 20 + TSS region transcription start site region 154487
Tssr154488 19 5741707 to 5741729 22 + TSS region transcription start site region 154488
Tssr154489 19 5741859 to 5741887 28 + TSS region transcription start site region 154489
Tssr154490 19 5741892 to 5741902 10 + TSS region transcription start site region 154490
Tssr154491 19 5741959 to 5742015 56 + TSS region transcription start site region 154491
Tssr154492 19 5742019 to 5742036 17 + TSS region transcription start site region 154492
Tssr154493 19 5742080 to 5742085 5 + TSS region transcription start site region 154493
Tssr154494 19 5742460 to 5742472 12 + TSS region transcription start site region 154494
Cpgi10476 19 5745487 to 5746118 631 CpG island CpG island 10476
Tssr154495 19 5747743 to 5747753 10 + TSS region transcription start site region 154495
Cpgi10477 19 5751102 to 5752126 1024 CpG island CpG island 10477
Cpgi10478 19 5756613 to 5758217 1604 CpG island CpG island 10478
Scyl1 19 5758427 to 5771401 12974 - protein coding gene SCY1-like 1 (S. cerevisiae)
ocd 19 5758427 to 9933333 4174906 heritable phenotypic marker osteochondrodystrophy
Cpgi10479 19 5770502 to 5771572 1070 CpG island CpG island 10479
Tssr157640 19 5771270 to 5771301 31 - TSS region transcription start site region 157640
Tssr157641 19 5771343 to 5771371 28 - TSS region transcription start site region 157641
Tssr157642 19 5771376 to 5771408 32 - TSS region transcription start site region 157642
Tssr157643 19 5771412 to 5771423 11 - TSS region transcription start site region 157643
Tssr157644 19 5771618 to 5771640 22 - TSS region transcription start site region 157644
Malat1 19 5795690 to 5802671 6981 - lincRNA gene metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)
Tssr157645 19 5796353 to 5796381 28 - TSS region transcription start site region 157645
Tssr157646 19 5796383 to 5796483 100 - TSS region transcription start site region 157646
Tssr157647 19 5796545 to 5796570 25 - TSS region transcription start site region 157647
Tssr157648 19 5796711 to 5796737 26 - TSS region transcription start site region 157648