Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:56522080-57122087

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dclre1a 19 56529167 to 56548222 19055 - protein coding gene DNA cross-link repair 1A
Tssr5565 19 56535167 to 56535178 11 - TSS region transcription start site region 5565
Tssr159870 19 56544626 to 56544672 46 - TSS region transcription start site region 159870
Tssr159871 19 56548013 to 56548046 33 - TSS region transcription start site region 159871
Tssr159872 19 56548122 to 56548127 5 - TSS region transcription start site region 159872
Cpgi11090 19 56548212 to 56549107 895 CpG island CpG island 11090
Tssr159873 19 56548214 to 56548264 50 - TSS region transcription start site region 159873
Tssr157198 19 56548254 to 56548283 29 + TSS region transcription start site region 157198
Nhlrc2 19 56548261 to 56598846 50585 + protein coding gene NHL repeat containing 2
Tssr157199 19 56548435 to 56548512 77 + TSS region transcription start site region 157199
Tssr157200 19 56548518 to 56548543 25 + TSS region transcription start site region 157200
Tssr157201 19 56548553 to 56548572 19 + TSS region transcription start site region 157201
Tssr157202 19 56548579 to 56548623 44 + TSS region transcription start site region 157202
Tssr157203 19 56548632 to 56548684 52 + TSS region transcription start site region 157203
Tssr159874 19 56566079 to 56566127 48 - TSS region transcription start site region 159874
Tssr157204 19 56582847 to 56582864 17 + TSS region transcription start site region 157204
Tssr157205 19 56593685 to 56593696 11 + TSS region transcription start site region 157205
Bw21 19 56607634 to 56607634 0 QTL body weight QTL 21
Tssr159875 19 56617422 to 56617425 3 - TSS region transcription start site region 159875
Tssr159876 19 56617707 to 56617718 11 - TSS region transcription start site region 159876
Gm32441 19 56655970 to 56664626 8656 - lncRNA gene predicted gene, 32441
Tssr159877 19 56663655 to 56663697 42 - TSS region transcription start site region 159877
Tssr159878 19 56666048 to 56666058 10 - TSS region transcription start site region 159878
Gm32492 19 56669067 to 56674549 5482 + lncRNA gene predicted gene, 32492
Tssr157206 19 56669282 to 56669287 5 + TSS region transcription start site region 157206
Tssr157207 19 56703459 to 56703509 50 + TSS region transcription start site region 157207
Gm32575 19 56703751 to 56714015 10264 + lncRNA gene predicted gene, 32575
Cpgi11091 19 56721073 to 56724023 2950 CpG island CpG island 11091
Tssr157208 19 56722087 to 56722094 7 + TSS region transcription start site region 157208
Tssr157209 19 56722110 to 56722128 18 + TSS region transcription start site region 157209
Tssr157210 19 56722140 to 56722153 13 + TSS region transcription start site region 157210
Adrb1 19 56722372 to 56724862 2490 + protein coding gene adrenergic receptor, beta 1
Gm32718 19 56743045 to 56765957 22912 + lncRNA gene predicted gene, 32718
Tssr157211 19 56744450 to 56744467 17 + TSS region transcription start site region 157211
Tssr157212 19 56745517 to 56745525 8 + TSS region transcription start site region 157212
Tssr159879 19 56746732 to 56746742 10 - TSS region transcription start site region 159879
Tssr159880 19 56746745 to 56746755 10 - TSS region transcription start site region 159880
Tssr159881 19 56746758 to 56746785 27 - TSS region transcription start site region 159881
Gm6990 19 56754999 to 56755346 347 - pseudogene predicted pseudogene 6990
Tssr157213 19 56758195 to 56758209 14 + TSS region transcription start site region 157213
Tssr157214 19 56758267 to 56758279 12 + TSS region transcription start site region 157214
Ccdc186 19 56787481 to 56822190 34709 - protein coding gene coiled-coil domain containing 186
1700010L13Rik 19 56815352 to 56822538 7186 protein coding gene RIKEN cDNA 1700010L13 gene
Tssr159882 19 56815768 to 56815777 9 - TSS region transcription start site region 159882
Tssr159883 19 56815784 to 56815798 14 - TSS region transcription start site region 159883
Tssr159884 19 56815800 to 56815810 10 - TSS region transcription start site region 159884
Tssr159885 19 56815818 to 56815820 2 - TSS region transcription start site region 159885
Cpgi11092 19 56821637 to 56822625 988 CpG island CpG island 11092
Tssr157215 19 56821928 to 56821964 36 + TSS region transcription start site region 157215
Tssr159886 19 56822080 to 56822087 7 - TSS region transcription start site region 159886
Tssr159887 19 56822161 to 56822220 59 - TSS region transcription start site region 159887
Cpgi11093 19 56826110 to 56826636 526 CpG island CpG island 11093
Tssr157216 19 56826202 to 56826248 46 + TSS region transcription start site region 157216
Tdrd1 19 56826209 to 56870012 43803 + protein coding gene tudor domain containing 1
Tssr157217 19 56826268 to 56826288 20 + TSS region transcription start site region 157217
Tssr157218 19 56826504 to 56826513 9 + TSS region transcription start site region 157218
Tssr157219 19 56851944 to 56851954 10 + TSS region transcription start site region 157219
Cpgi11094 19 56873870 to 56875034 1164 CpG island CpG island 11094
Tssr157220 19 56874041 to 56874058 17 + TSS region transcription start site region 157220
Tssr157221 19 56874403 to 56874474 71 + TSS region transcription start site region 157221
Vwa2 19 56874416 to 56912078 37662 + protein coding gene von Willebrand factor A domain containing 2
Tssr157222 19 56897846 to 56897858 12 + TSS region transcription start site region 157222
Tssr157223 19 56897868 to 56897875 7 + TSS region transcription start site region 157223
Afap1l2 19 56912361 to 57008228 95867 - protein coding gene actin filament associated protein 1-like 2
Tssr159888 19 56952003 to 56952020 17 - TSS region transcription start site region 159888
Tssr159889 19 56952148 to 56952151 3 - TSS region transcription start site region 159889
Tssr159890 19 56964861 to 56964864 3 - TSS region transcription start site region 159890
Gm38597 19 56977200 to 56984849 7649 + lncRNA gene predicted gene, 38597
Cpgi11095 19 57007825 to 57008785 960 CpG island CpG island 11095
Tssr159891 19 57008177 to 57008184 7 - TSS region transcription start site region 159891
Tssr159892 19 57008187 to 57008223 36 - TSS region transcription start site region 159892
Tssr159893 19 57008546 to 57008560 14 - TSS region transcription start site region 159893
Tssr159894 19 57008569 to 57008580 11 - TSS region transcription start site region 159894
Tssr159895 19 57008598 to 57008607 9 - TSS region transcription start site region 159895
Ablim1 19 57033264 to 57315204 281940 - protein coding gene actin-binding LIM protein 1
Tssr159896 19 57045084 to 57045086 2 - TSS region transcription start site region 159896
Tssr159897 19 57045739 to 57045743 4 - TSS region transcription start site region 159897
D19Dcr65 19 57052377 to 57052472 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 65
Tssr159898 19 57079689 to 57079691 2 - TSS region transcription start site region 159898
Tssr157224 19 57117404 to 57117421 17 + TSS region transcription start site region 157224
Tssr159899 19 57118807 to 57118814 7 - TSS region transcription start site region 159899
Tssr159900 19 57118856 to 57118868 12 - TSS region transcription start site region 159900
Tssr159901 19 57118876 to 57118896 20 - TSS region transcription start site region 159901
Tssr159902 19 57118897 to 57118979 82 - TSS region transcription start site region 159902
Tssr159903 19 57118981 to 57119026 45 - TSS region transcription start site region 159903
Tssr157225 19 57119108 to 57119122 14 + TSS region transcription start site region 157225
Cpgi11096 19 57119389 to 57119645 256 CpG island CpG island 11096