Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:56428104-60481082

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488 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Led3 19 51099940 to 59135440 8035500 QTL late embryonic death 3
Sluc35 19 55387618 to 59135440 3747822 QTL susceptibility to lung cancer 35
Casp7 19 56397129 to 56442344 45215 + protein coding gene caspase 7
Tssr157188 19 56436681 to 56436712 31 + TSS region transcription start site region 157188
Tssr157189 19 56441191 to 56441205 14 + TSS region transcription start site region 157189
Tssr157190 19 56441229 to 56441238 9 + TSS region transcription start site region 157190
Gm46657 19 56442446 to 56455000 12554 - lncRNA gene predicted gene, 46657
Tssr157191 19 56461565 to 56461572 7 + TSS region transcription start site region 157191
Tssr157192 19 56461617 to 56461628 11 + TSS region transcription start site region 157192
Tssr157193 19 56461629 to 56461646 17 + TSS region transcription start site region 157193
Plekhs1 19 56461640 to 56486752 25112 + protein coding gene pleckstrin homology domain containing, family S member 1
Tssr157194 19 56461654 to 56461668 14 + TSS region transcription start site region 157194
Cpgi11089 19 56474534 to 56475114 580 CpG island CpG island 11089
Tssr157195 19 56477724 to 56477731 7 + TSS region transcription start site region 157195
Tssr157196 19 56510562 to 56510618 56 + TSS region transcription start site region 157196
Tssr157197 19 56510680 to 56510691 11 + TSS region transcription start site region 157197
Dclre1a 19 56529167 to 56548222 19055 - protein coding gene DNA cross-link repair 1A
Tssr5565 19 56535167 to 56535178 11 - TSS region transcription start site region 5565
Tssr159870 19 56544626 to 56544672 46 - TSS region transcription start site region 159870
Tssr159871 19 56548013 to 56548046 33 - TSS region transcription start site region 159871
Tssr159872 19 56548122 to 56548127 5 - TSS region transcription start site region 159872
Cpgi11090 19 56548212 to 56549107 895 CpG island CpG island 11090
Tssr159873 19 56548214 to 56548264 50 - TSS region transcription start site region 159873
Tssr157198 19 56548254 to 56548283 29 + TSS region transcription start site region 157198
Nhlrc2 19 56548261 to 56598846 50585 + protein coding gene NHL repeat containing 2
Tssr157199 19 56548435 to 56548512 77 + TSS region transcription start site region 157199
Tssr157200 19 56548518 to 56548543 25 + TSS region transcription start site region 157200
Tssr157201 19 56548553 to 56548572 19 + TSS region transcription start site region 157201
Tssr157202 19 56548579 to 56548623 44 + TSS region transcription start site region 157202
Tssr157203 19 56548632 to 56548684 52 + TSS region transcription start site region 157203
Tssr159874 19 56566079 to 56566127 48 - TSS region transcription start site region 159874
Tssr157204 19 56582847 to 56582864 17 + TSS region transcription start site region 157204
Tssr157205 19 56593685 to 56593696 11 + TSS region transcription start site region 157205
Bw21 19 56607634 to 56607634 0 QTL body weight QTL 21
Tssr159875 19 56617422 to 56617425 3 - TSS region transcription start site region 159875
Tssr159876 19 56617707 to 56617718 11 - TSS region transcription start site region 159876
Gm32441 19 56655970 to 56664626 8656 - lncRNA gene predicted gene, 32441
Tssr159877 19 56663655 to 56663697 42 - TSS region transcription start site region 159877
Tssr159878 19 56666048 to 56666058 10 - TSS region transcription start site region 159878
Gm32492 19 56669067 to 56674549 5482 + lncRNA gene predicted gene, 32492
Tssr157206 19 56669282 to 56669287 5 + TSS region transcription start site region 157206
Tssr157207 19 56703459 to 56703509 50 + TSS region transcription start site region 157207
Gm32575 19 56703751 to 56714015 10264 + lncRNA gene predicted gene, 32575
Cpgi11091 19 56721073 to 56724023 2950 CpG island CpG island 11091
Tssr157208 19 56722087 to 56722094 7 + TSS region transcription start site region 157208
Tssr157209 19 56722110 to 56722128 18 + TSS region transcription start site region 157209
Tssr157210 19 56722140 to 56722153 13 + TSS region transcription start site region 157210
Adrb1 19 56722372 to 56724862 2490 + protein coding gene adrenergic receptor, beta 1
Gm32718 19 56743045 to 56765957 22912 + lncRNA gene predicted gene, 32718
Tssr157211 19 56744450 to 56744467 17 + TSS region transcription start site region 157211
Tssr157212 19 56745517 to 56745525 8 + TSS region transcription start site region 157212
Tssr159879 19 56746732 to 56746742 10 - TSS region transcription start site region 159879
Tssr159880 19 56746745 to 56746755 10 - TSS region transcription start site region 159880
Tssr159881 19 56746758 to 56746785 27 - TSS region transcription start site region 159881
Gm6990 19 56754999 to 56755346 347 - pseudogene predicted pseudogene 6990
Tssr157213 19 56758195 to 56758209 14 + TSS region transcription start site region 157213
Tssr157214 19 56758267 to 56758279 12 + TSS region transcription start site region 157214
Ccdc186 19 56787481 to 56822190 34709 - protein coding gene coiled-coil domain containing 186
1700010L13Rik 19 56815352 to 56822538 7186 protein coding gene RIKEN cDNA 1700010L13 gene
Tssr159882 19 56815768 to 56815777 9 - TSS region transcription start site region 159882
Tssr159883 19 56815784 to 56815798 14 - TSS region transcription start site region 159883
Tssr159884 19 56815800 to 56815810 10 - TSS region transcription start site region 159884
Tssr159885 19 56815818 to 56815820 2 - TSS region transcription start site region 159885
Cpgi11092 19 56821637 to 56822625 988 CpG island CpG island 11092
Tssr157215 19 56821928 to 56821964 36 + TSS region transcription start site region 157215
Tssr159886 19 56822080 to 56822087 7 - TSS region transcription start site region 159886
Tssr159887 19 56822161 to 56822220 59 - TSS region transcription start site region 159887
Cpgi11093 19 56826110 to 56826636 526 CpG island CpG island 11093
Tssr157216 19 56826202 to 56826248 46 + TSS region transcription start site region 157216
Tdrd1 19 56826209 to 56870012 43803 + protein coding gene tudor domain containing 1
Tssr157217 19 56826268 to 56826288 20 + TSS region transcription start site region 157217
Tssr157218 19 56826504 to 56826513 9 + TSS region transcription start site region 157218
Tssr157219 19 56851944 to 56851954 10 + TSS region transcription start site region 157219
Cpgi11094 19 56873870 to 56875034 1164 CpG island CpG island 11094
Tssr157220 19 56874041 to 56874058 17 + TSS region transcription start site region 157220
Tssr157221 19 56874403 to 56874474 71 + TSS region transcription start site region 157221
Vwa2 19 56874416 to 56912078 37662 + protein coding gene von Willebrand factor A domain containing 2
Tssr157222 19 56897846 to 56897858 12 + TSS region transcription start site region 157222
Tssr157223 19 56897868 to 56897875 7 + TSS region transcription start site region 157223
Afap1l2 19 56912361 to 57008228 95867 - protein coding gene actin filament associated protein 1-like 2
Tssr159888 19 56952003 to 56952020 17 - TSS region transcription start site region 159888
Tssr159889 19 56952148 to 56952151 3 - TSS region transcription start site region 159889
Tssr159890 19 56964861 to 56964864 3 - TSS region transcription start site region 159890
Gm38597 19 56977200 to 56984849 7649 + lncRNA gene predicted gene, 38597
Cpgi11095 19 57007825 to 57008785 960 CpG island CpG island 11095
Tssr159891 19 57008177 to 57008184 7 - TSS region transcription start site region 159891
Tssr159892 19 57008187 to 57008223 36 - TSS region transcription start site region 159892
Tssr159893 19 57008546 to 57008560 14 - TSS region transcription start site region 159893
Tssr159894 19 57008569 to 57008580 11 - TSS region transcription start site region 159894
Tssr159895 19 57008598 to 57008607 9 - TSS region transcription start site region 159895
Ablim1 19 57033264 to 57315204 281940 - protein coding gene actin-binding LIM protein 1
Tssr159896 19 57045084 to 57045086 2 - TSS region transcription start site region 159896
Tssr159897 19 57045739 to 57045743 4 - TSS region transcription start site region 159897
D19Dcr65 19 57052377 to 57052472 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 65
Tssr159898 19 57079689 to 57079691 2 - TSS region transcription start site region 159898
Tssr157224 19 57117404 to 57117421 17 + TSS region transcription start site region 157224
Tssr159899 19 57118807 to 57118814 7 - TSS region transcription start site region 159899
Tssr159900 19 57118856 to 57118868 12 - TSS region transcription start site region 159900
Tssr159901 19 57118876 to 57118896 20 - TSS region transcription start site region 159901
Tssr159902 19 57118897 to 57118979 82 - TSS region transcription start site region 159902
Tssr159903 19 57118981 to 57119026 45 - TSS region transcription start site region 159903
Tssr157225 19 57119108 to 57119122 14 + TSS region transcription start site region 157225
Cpgi11096 19 57119389 to 57119645 256 CpG island CpG island 11096
D19Mit105 19 57129061 to 57129150 89 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 105
Tssr159904 19 57131354 to 57131359 5 - TSS region transcription start site region 159904
Tssr157226 19 57131699 to 57131735 36 + TSS region transcription start site region 157226
Tssr159905 19 57134643 to 57134656 13 - TSS region transcription start site region 159905
Tssr159906 19 57134786 to 57134821 35 - TSS region transcription start site region 159906
Tssr159907 19 57134991 to 57135006 15 - TSS region transcription start site region 159907
Tssr159908 19 57155414 to 57155461 47 - TSS region transcription start site region 159908
Tssr159909 19 57165816 to 57165818 2 - TSS region transcription start site region 159909
Tssr159910 19 57178539 to 57178541 2 - TSS region transcription start site region 159910
Tssr159911 19 57182293 to 57182315 22 - TSS region transcription start site region 159911
Tssr159912 19 57182318 to 57182354 36 - TSS region transcription start site region 159912
Cpgi11097 19 57197321 to 57197728 407 CpG island CpG island 11097
Tssr159913 19 57197350 to 57197366 16 - TSS region transcription start site region 159913
Tssr159914 19 57197377 to 57197417 40 - TSS region transcription start site region 159914
Tssr159915 19 57197435 to 57197460 25 - TSS region transcription start site region 159915
Tssr159916 19 57197516 to 57197536 20 - TSS region transcription start site region 159916
Tssr159917 19 57197556 to 57197567 11 - TSS region transcription start site region 159917
Tssr157227 19 57216155 to 57216165 10 + TSS region transcription start site region 157227
Tssr159918 19 57230395 to 57230449 54 - TSS region transcription start site region 159918
Tssr159919 19 57239265 to 57239301 36 - TSS region transcription start site region 159919
Tssr159920 19 57239310 to 57239323 13 - TSS region transcription start site region 159920
Tssr159921 19 57241712 to 57241715 3 - TSS region transcription start site region 159921
Tssr5566 19 57245352 to 57245366 14 - TSS region transcription start site region 5566
Tssr159922 19 57251681 to 57251685 4 - TSS region transcription start site region 159922
Tssr157228 19 57273930 to 57273962 32 + TSS region transcription start site region 157228
4930449E18Rik 19 57273960 to 57277052 3092 + lncRNA gene RIKEN cDNA 4930449E18 gene
Tssr159923 19 57274795 to 57274800 5 - TSS region transcription start site region 159923
Cpgi11098 19 57314423 to 57315218 795 CpG island CpG island 11098
Tssr159924 19 57314726 to 57314743 17 - TSS region transcription start site region 159924
Tssr159925 19 57314802 to 57314815 13 - TSS region transcription start site region 159925
Tssr159926 19 57314843 to 57314893 50 - TSS region transcription start site region 159926
Tssr159927 19 57314896 to 57314930 34 - TSS region transcription start site region 159927
Tssr159928 19 57314989 to 57315000 11 - TSS region transcription start site region 159928
Tssr159929 19 57315067 to 57315083 16 - TSS region transcription start site region 159929
B230217O12Rik 19 57323385 to 57360775 37390 - lincRNA gene RIKEN cDNA B230217O12 gene
Cpgi11099 19 57323689 to 57324057 368 CpG island CpG island 11099
Cpgi11100 19 57324855 to 57325233 378 CpG island CpG island 11100
Tssr159930 19 57358465 to 57358485 20 - TSS region transcription start site region 159930
Tssr159931 19 57360115 to 57360130 15 - TSS region transcription start site region 159931
Cpgi11101 19 57360492 to 57361905 1413 CpG island CpG island 11101
Tssr159932 19 57360668 to 57360793 125 - TSS region transcription start site region 159932
Tssr157229 19 57360688 to 57360704 16 + TSS region transcription start site region 157229
Tssr157230 19 57360751 to 57360762 11 + TSS region transcription start site region 157230
Tssr159933 19 57360808 to 57360822 14 - TSS region transcription start site region 159933
Tssr157231 19 57360940 to 57360952 12 + TSS region transcription start site region 157231
Tssr157232 19 57360960 to 57360980 20 + TSS region transcription start site region 157232
Fam160b1 19 57361009 to 57389594 28585 + protein coding gene family with sequence similarity 160, member B1
Tssr157233 19 57361028 to 57361113 85 + TSS region transcription start site region 157233
Tssr157234 19 57361220 to 57361238 18 + TSS region transcription start site region 157234
D19Dcr66 19 57366875 to 57366970 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 66
2600017C09Rik 19 57404095 to 57404274 179 unclassified gene RIKEN cDNA 2600017C09 gene
Gm41874 19 57404678 to 57411272 6594 + lncRNA gene predicted gene, 41874
Cpgi11102 19 57411939 to 57412288 349 CpG island CpG island 11102
Tssr159934 19 57418588 to 57418597 9 - TSS region transcription start site region 159934
Cpgi11103 19 57425367 to 57425549 182 CpG island CpG island 11103
Cpgi11104 19 57439043 to 57439375 332 CpG island CpG island 11104
Cpgi11105 19 57452895 to 57453324 429 CpG island CpG island 11105
Tssr157235 19 57452900 to 57452926 26 + TSS region transcription start site region 157235
Trub1 19 57452906 to 57491005 38099 + protein coding gene TruB pseudouridine (psi) synthase family member 1
Tssr157236 19 57452928 to 57452947 19 + TSS region transcription start site region 157236
Gm26874 19 57459572 to 57461553 1981 - lincRNA gene predicted gene, 26874
Tssr157237 19 57477543 to 57477558 15 + TSS region transcription start site region 157237
Tssr157238 19 57477595 to 57477602 7 + TSS region transcription start site region 157238
6720468P15Rik 19 57508564 to 57512788 4224 + lncRNA gene RIKEN cDNA 6720468P15 gene
Tssr157239 19 57508582 to 57508597 15 + TSS region transcription start site region 157239
Gm32932 19 57522180 to 57531160 8980 + lncRNA gene predicted gene, 32932
Cpgi11106 19 57610120 to 57611891 1771 CpG island CpG island 11106
Tssr157240 19 57610945 to 57610963 18 + TSS region transcription start site region 157240
Tssr157241 19 57611020 to 57611079 59 + TSS region transcription start site region 157241
Atrnl1 19 57611034 to 58133338 522304 + protein coding gene attractin like 1
Tssr157242 19 57646261 to 57646266 5 + TSS region transcription start site region 157242
Tssr157243 19 57658961 to 57658969 8 + TSS region transcription start site region 157243
Tssr159935 19 57668089 to 57668108 19 - TSS region transcription start site region 159935
Tssr157244 19 57691366 to 57691372 6 + TSS region transcription start site region 157244
Tssr5567 19 57698181 to 57698183 2 + TSS region transcription start site region 5567
Tssr157245 19 57747600 to 57747613 13 + TSS region transcription start site region 157245
Cpgi11107 19 57756250 to 57756442 192 CpG island CpG island 11107
Eosnp3 19 57757132 to 57757132 0 QTL percent eosinophils 3
Tssr157246 19 57780568 to 57780572 4 + TSS region transcription start site region 157246
Tssr157247 19 57804671 to 57804677 6 + TSS region transcription start site region 157247
Tssr157248 19 57950534 to 57950545 11 + TSS region transcription start site region 157248
Tssr157249 19 57999109 to 57999115 6 + TSS region transcription start site region 157249
Gm32980 19 58022571 to 58031893 9322 - lncRNA gene predicted gene, 32980
Mir5623 19 58051167 to 58051236 69 + miRNA gene microRNA 5623
E430016L07Rik 19 58091817 to 58096030 4213 unclassified gene RIKEN cDNA E430016L07 gene
Tssr157250 19 58119825 to 58119828 3 + TSS region transcription start site region 157250
Tssr159936 19 58123708 to 58123715 7 - TSS region transcription start site region 159936
D19Dcr67 19 58136939 to 58137039 100 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 67
D19Dcr68 19 58137479 to 58137574 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 68
Tssr5568 19 58143877 to 58143889 12 - TSS region transcription start site region 5568
Tssr5569 19 58144019 to 58144036 17 + TSS region transcription start site region 5569
Tssr157251 19 58144043 to 58144056 13 + TSS region transcription start site region 157251
Gm16277 19 58204139 to 58236047 31908 + antisense lncRNA gene predicted gene 16277
Tssr157252 19 58231103 to 58231112 9 + TSS region transcription start site region 157252
Gm41875 19 58231333 to 58232284 951 - lncRNA gene predicted gene, 41875
D19Dcr69 19 58235352 to 58235447 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 69
Gfra1 19 58235604 to 58455909 220305 - protein coding gene glial cell line derived neurotrophic factor family receptor alpha 1