Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:55956229-56926238

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr157171 19 55976675 to 55976696 21 + TSS region transcription start site region 157171
Tssr157172 19 56035094 to 56035097 3 + TSS region transcription start site region 157172
Tssr157173 19 56066127 to 56066140 13 + TSS region transcription start site region 157173
1700106J12Rik 19 56066127 to 56066933 806 unclassified gene RIKEN cDNA 1700106J12 gene
Tssr157174 19 56072106 to 56072108 2 + TSS region transcription start site region 157174
Gm4470 19 56077954 to 56081392 3438 + lncRNA gene predicted gene 4470
Cpgi11087 19 56105592 to 56105784 192 CpG island CpG island 11087
Gm31912 19 56105689 to 56109342 3653 + lncRNA gene predicted gene, 31912
Gm31965 19 56155105 to 56176419 21314 + lncRNA gene predicted gene, 31965
D19Mit84 19 56162965 to 56163112 147 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 84
Gm32028 19 56177735 to 56199050 21315 + lncRNA gene predicted gene, 32028
D19Mit33 19 56195632 to 56195893 261 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 33
Lfp1 19 56195632 to 56195893 261 QTL long free running period 1
Gm32144 19 56263413 to 56266917 3504 - lncRNA gene predicted gene, 32144
Gm32257 19 56273194 to 56292830 19636 - lncRNA gene predicted gene, 32257
Gm22271 19 56277518 to 56277645 127 - snoRNA gene predicted gene, 22271
Habp2 19 56287109 to 56320089 32980 + protein coding gene hyaluronic acid binding protein 2
Tssr157175 19 56287911 to 56287936 25 + TSS region transcription start site region 157175
Tssr157176 19 56287943 to 56287974 31 + TSS region transcription start site region 157176
Tssr157177 19 56319685 to 56319695 10 + TSS region transcription start site region 157177
Tssr157178 19 56319715 to 56319724 9 + TSS region transcription start site region 157178
Nrap 19 56320035 to 56390037 70002 - protein coding gene nebulin-related anchoring protein
Tssr157179 19 56362821 to 56362824 3 + TSS region transcription start site region 157179
Gm17197 19 56364262 to 56366241 1979 + antisense lncRNA gene predicted gene 17197
Tssr159864 19 56377946 to 56377963 17 - TSS region transcription start site region 159864
Tssr159865 19 56378266 to 56378270 4 - TSS region transcription start site region 159865
Tssr159866 19 56390004 to 56390007 3 - TSS region transcription start site region 159866
Tssr159867 19 56390027 to 56390043 16 - TSS region transcription start site region 159867
Cpgi11088 19 56396575 to 56397665 1090 CpG island CpG island 11088
Tssr157180 19 56396834 to 56396853 19 + TSS region transcription start site region 157180
Tssr5563 19 56397075 to 56397095 20 + TSS region transcription start site region 5563
Tssr157181 19 56397100 to 56397157 57 + TSS region transcription start site region 157181
Casp7 19 56397129 to 56442344 45215 + protein coding gene caspase 7
Tssr157182 19 56397215 to 56397226 11 + TSS region transcription start site region 157182
Tssr157183 19 56397231 to 56397265 34 + TSS region transcription start site region 157183
Tssr157184 19 56417136 to 56417158 22 + TSS region transcription start site region 157184
Tssr159868 19 56420498 to 56420503 5 - TSS region transcription start site region 159868
Tssr159869 19 56424591 to 56424592 1 - TSS region transcription start site region 159869
Tssr5564 19 56424643 to 56424660 17 - TSS region transcription start site region 5564
Tssr157185 19 56425683 to 56425694 11 + TSS region transcription start site region 157185
Tssr157186 19 56425716 to 56425742 26 + TSS region transcription start site region 157186
Tssr157187 19 56425756 to 56425771 15 + TSS region transcription start site region 157187
Tssr157188 19 56436681 to 56436712 31 + TSS region transcription start site region 157188
Tssr157189 19 56441191 to 56441205 14 + TSS region transcription start site region 157189
Tssr157190 19 56441229 to 56441238 9 + TSS region transcription start site region 157190
Gm46657 19 56442446 to 56455000 12554 - lncRNA gene predicted gene, 46657
Tssr157191 19 56461565 to 56461572 7 + TSS region transcription start site region 157191
Tssr157192 19 56461617 to 56461628 11 + TSS region transcription start site region 157192
Tssr157193 19 56461629 to 56461646 17 + TSS region transcription start site region 157193
Plekhs1 19 56461640 to 56486752 25112 + protein coding gene pleckstrin homology domain containing, family S member 1
Tssr157194 19 56461654 to 56461668 14 + TSS region transcription start site region 157194
Cpgi11089 19 56474534 to 56475114 580 CpG island CpG island 11089
Tssr157195 19 56477724 to 56477731 7 + TSS region transcription start site region 157195
Tssr157196 19 56510562 to 56510618 56 + TSS region transcription start site region 157196
Tssr157197 19 56510680 to 56510691 11 + TSS region transcription start site region 157197
Dclre1a 19 56529167 to 56548222 19055 - protein coding gene DNA cross-link repair 1A
Tssr5565 19 56535167 to 56535178 11 - TSS region transcription start site region 5565
Tssr159870 19 56544626 to 56544672 46 - TSS region transcription start site region 159870
Tssr159871 19 56548013 to 56548046 33 - TSS region transcription start site region 159871
Tssr159872 19 56548122 to 56548127 5 - TSS region transcription start site region 159872
Cpgi11090 19 56548212 to 56549107 895 CpG island CpG island 11090
Tssr159873 19 56548214 to 56548264 50 - TSS region transcription start site region 159873
Tssr157198 19 56548254 to 56548283 29 + TSS region transcription start site region 157198
Nhlrc2 19 56548261 to 56598846 50585 + protein coding gene NHL repeat containing 2
Tssr157199 19 56548435 to 56548512 77 + TSS region transcription start site region 157199
Tssr157200 19 56548518 to 56548543 25 + TSS region transcription start site region 157200
Tssr157201 19 56548553 to 56548572 19 + TSS region transcription start site region 157201
Tssr157202 19 56548579 to 56548623 44 + TSS region transcription start site region 157202
Tssr157203 19 56548632 to 56548684 52 + TSS region transcription start site region 157203
Tssr159874 19 56566079 to 56566127 48 - TSS region transcription start site region 159874
Tssr157204 19 56582847 to 56582864 17 + TSS region transcription start site region 157204
Tssr157205 19 56593685 to 56593696 11 + TSS region transcription start site region 157205
Bw21 19 56607634 to 56607634 0 QTL body weight QTL 21
Tssr159875 19 56617422 to 56617425 3 - TSS region transcription start site region 159875
Tssr159876 19 56617707 to 56617718 11 - TSS region transcription start site region 159876
Gm32441 19 56655970 to 56664626 8656 - lncRNA gene predicted gene, 32441
Tssr159877 19 56663655 to 56663697 42 - TSS region transcription start site region 159877
Tssr159878 19 56666048 to 56666058 10 - TSS region transcription start site region 159878
Gm32492 19 56669067 to 56674549 5482 + lncRNA gene predicted gene, 32492
Tssr157206 19 56669282 to 56669287 5 + TSS region transcription start site region 157206
Tssr157207 19 56703459 to 56703509 50 + TSS region transcription start site region 157207
Gm32575 19 56703751 to 56714015 10264 + lncRNA gene predicted gene, 32575
Cpgi11091 19 56721073 to 56724023 2950 CpG island CpG island 11091
Tssr157208 19 56722087 to 56722094 7 + TSS region transcription start site region 157208
Tssr157209 19 56722110 to 56722128 18 + TSS region transcription start site region 157209
Tssr157210 19 56722140 to 56722153 13 + TSS region transcription start site region 157210
Adrb1 19 56722372 to 56724862 2490 + protein coding gene adrenergic receptor, beta 1
Gm32718 19 56743045 to 56765957 22912 + lncRNA gene predicted gene, 32718
Tssr157211 19 56744450 to 56744467 17 + TSS region transcription start site region 157211
Tssr157212 19 56745517 to 56745525 8 + TSS region transcription start site region 157212
Tssr159879 19 56746732 to 56746742 10 - TSS region transcription start site region 159879
Tssr159880 19 56746745 to 56746755 10 - TSS region transcription start site region 159880
Tssr159881 19 56746758 to 56746785 27 - TSS region transcription start site region 159881
Gm6990 19 56754999 to 56755346 347 - pseudogene predicted pseudogene 6990
Tssr157213 19 56758195 to 56758209 14 + TSS region transcription start site region 157213
Tssr157214 19 56758267 to 56758279 12 + TSS region transcription start site region 157214
Ccdc186 19 56787481 to 56822190 34709 - protein coding gene coiled-coil domain containing 186
1700010L13Rik 19 56815352 to 56822538 7186 protein coding gene RIKEN cDNA 1700010L13 gene
Tssr159882 19 56815768 to 56815777 9 - TSS region transcription start site region 159882
Tssr159883 19 56815784 to 56815798 14 - TSS region transcription start site region 159883
Tssr159884 19 56815800 to 56815810 10 - TSS region transcription start site region 159884
Tssr159885 19 56815818 to 56815820 2 - TSS region transcription start site region 159885
Cpgi11092 19 56821637 to 56822625 988 CpG island CpG island 11092
Tssr157215 19 56821928 to 56821964 36 + TSS region transcription start site region 157215
Tssr159886 19 56822080 to 56822087 7 - TSS region transcription start site region 159886
Tssr159887 19 56822161 to 56822220 59 - TSS region transcription start site region 159887
Cpgi11093 19 56826110 to 56826636 526 CpG island CpG island 11093
Tssr157216 19 56826202 to 56826248 46 + TSS region transcription start site region 157216
Tdrd1 19 56826209 to 56870012 43803 + protein coding gene tudor domain containing 1
Tssr157217 19 56826268 to 56826288 20 + TSS region transcription start site region 157217
Tssr157218 19 56826504 to 56826513 9 + TSS region transcription start site region 157218
Tssr157219 19 56851944 to 56851954 10 + TSS region transcription start site region 157219
Cpgi11094 19 56873870 to 56875034 1164 CpG island CpG island 11094
Tssr157220 19 56874041 to 56874058 17 + TSS region transcription start site region 157220
Tssr157221 19 56874403 to 56874474 71 + TSS region transcription start site region 157221
Vwa2 19 56874416 to 56912078 37662 + protein coding gene von Willebrand factor A domain containing 2
Tssr157222 19 56897846 to 56897858 12 + TSS region transcription start site region 157222
Tssr157223 19 56897868 to 56897875 7 + TSS region transcription start site region 157223
Afap1l2 19 56912361 to 57008228 95867 - protein coding gene actin filament associated protein 1-like 2