Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:55923413-56606917

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcf7l2 19 55741810 to 55933654 191844 + protein coding gene transcription factor 7 like 2, T cell specific, HMG box
Tssr157159 19 55925933 to 55925947 14 + TSS region transcription start site region 157159
Tssr157160 19 55925951 to 55925979 28 + TSS region transcription start site region 157160
Tssr157161 19 55930469 to 55930475 6 + TSS region transcription start site region 157161
Tssr157162 19 55931464 to 55931480 16 + TSS region transcription start site region 157162
Tssr157163 19 55931497 to 55931530 33 + TSS region transcription start site region 157163
Cpgi11086 19 55931528 to 55931797 269 CpG island CpG island 11086
Tssr157164 19 55931703 to 55931716 13 + TSS region transcription start site region 157164
Tssr157165 19 55932299 to 55932325 26 + TSS region transcription start site region 157165
Tssr157166 19 55932375 to 55932379 4 + TSS region transcription start site region 157166
Tssr157167 19 55932490 to 55932503 13 + TSS region transcription start site region 157167
Tssr157168 19 55932742 to 55932746 4 + TSS region transcription start site region 157168
Tssr157169 19 55933172 to 55933183 11 + TSS region transcription start site region 157169
Tssr157170 19 55938486 to 55938500 14 + TSS region transcription start site region 157170
Gm41872 19 55940237 to 55950980 10743 + lncRNA gene predicted gene, 41872
Tssr157171 19 55976675 to 55976696 21 + TSS region transcription start site region 157171
Tssr157172 19 56035094 to 56035097 3 + TSS region transcription start site region 157172
1700106J12Rik 19 56066127 to 56066933 806 unclassified gene RIKEN cDNA 1700106J12 gene
Tssr157173 19 56066127 to 56066140 13 + TSS region transcription start site region 157173
Tssr157174 19 56072106 to 56072108 2 + TSS region transcription start site region 157174
Gm4470 19 56077954 to 56081392 3438 + lncRNA gene predicted gene 4470
Cpgi11087 19 56105592 to 56105784 192 CpG island CpG island 11087
Gm31912 19 56105689 to 56109342 3653 + lncRNA gene predicted gene, 31912
Gm31965 19 56155105 to 56176419 21314 + lncRNA gene predicted gene, 31965
D19Mit84 19 56162965 to 56163112 147 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 84
Gm32028 19 56177735 to 56199050 21315 + lncRNA gene predicted gene, 32028
D19Mit33 19 56195632 to 56195893 261 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 33
Lfp1 19 56195632 to 56195893 261 QTL long free running period 1
Gm32144 19 56263413 to 56266917 3504 - lncRNA gene predicted gene, 32144
Gm32257 19 56273194 to 56292830 19636 - lncRNA gene predicted gene, 32257
Gm22271 19 56277518 to 56277645 127 - snoRNA gene predicted gene, 22271
Habp2 19 56287109 to 56320089 32980 + protein coding gene hyaluronic acid binding protein 2
Tssr157175 19 56287911 to 56287936 25 + TSS region transcription start site region 157175
Tssr157176 19 56287943 to 56287974 31 + TSS region transcription start site region 157176
Tssr157177 19 56319685 to 56319695 10 + TSS region transcription start site region 157177
Tssr157178 19 56319715 to 56319724 9 + TSS region transcription start site region 157178
Nrap 19 56320035 to 56390037 70002 - protein coding gene nebulin-related anchoring protein
Tssr157179 19 56362821 to 56362824 3 + TSS region transcription start site region 157179
Gm17197 19 56364262 to 56366241 1979 + antisense lncRNA gene predicted gene 17197
Tssr159864 19 56377946 to 56377963 17 - TSS region transcription start site region 159864
Tssr159865 19 56378266 to 56378270 4 - TSS region transcription start site region 159865
Tssr159866 19 56390004 to 56390007 3 - TSS region transcription start site region 159866
Tssr159867 19 56390027 to 56390043 16 - TSS region transcription start site region 159867
Cpgi11088 19 56396575 to 56397665 1090 CpG island CpG island 11088
Tssr157180 19 56396834 to 56396853 19 + TSS region transcription start site region 157180
Tssr5563 19 56397075 to 56397095 20 + TSS region transcription start site region 5563
Tssr157181 19 56397100 to 56397157 57 + TSS region transcription start site region 157181
Casp7 19 56397129 to 56442344 45215 + protein coding gene caspase 7
Tssr157182 19 56397215 to 56397226 11 + TSS region transcription start site region 157182
Tssr157183 19 56397231 to 56397265 34 + TSS region transcription start site region 157183
Tssr157184 19 56417136 to 56417158 22 + TSS region transcription start site region 157184
Tssr159868 19 56420498 to 56420503 5 - TSS region transcription start site region 159868
Tssr159869 19 56424591 to 56424592 1 - TSS region transcription start site region 159869
Tssr5564 19 56424643 to 56424660 17 - TSS region transcription start site region 5564
Tssr157185 19 56425683 to 56425694 11 + TSS region transcription start site region 157185
Tssr157186 19 56425716 to 56425742 26 + TSS region transcription start site region 157186
Tssr157187 19 56425756 to 56425771 15 + TSS region transcription start site region 157187
Tssr157188 19 56436681 to 56436712 31 + TSS region transcription start site region 157188
Tssr157189 19 56441191 to 56441205 14 + TSS region transcription start site region 157189
Tssr157190 19 56441229 to 56441238 9 + TSS region transcription start site region 157190
Gm46657 19 56442446 to 56455000 12554 - lncRNA gene predicted gene, 46657
Tssr157191 19 56461565 to 56461572 7 + TSS region transcription start site region 157191
Tssr157192 19 56461617 to 56461628 11 + TSS region transcription start site region 157192
Tssr157193 19 56461629 to 56461646 17 + TSS region transcription start site region 157193
Plekhs1 19 56461640 to 56486752 25112 + protein coding gene pleckstrin homology domain containing, family S member 1
Tssr157194 19 56461654 to 56461668 14 + TSS region transcription start site region 157194
Cpgi11089 19 56474534 to 56475114 580 CpG island CpG island 11089
Tssr157195 19 56477724 to 56477731 7 + TSS region transcription start site region 157195
Tssr157196 19 56510562 to 56510618 56 + TSS region transcription start site region 157196
Tssr157197 19 56510680 to 56510691 11 + TSS region transcription start site region 157197
Dclre1a 19 56529167 to 56548222 19055 - protein coding gene DNA cross-link repair 1A
Tssr5565 19 56535167 to 56535178 11 - TSS region transcription start site region 5565
Tssr159870 19 56544626 to 56544672 46 - TSS region transcription start site region 159870
Tssr159871 19 56548013 to 56548046 33 - TSS region transcription start site region 159871
Tssr159872 19 56548122 to 56548127 5 - TSS region transcription start site region 159872
Cpgi11090 19 56548212 to 56549107 895 CpG island CpG island 11090
Tssr159873 19 56548214 to 56548264 50 - TSS region transcription start site region 159873
Tssr157198 19 56548254 to 56548283 29 + TSS region transcription start site region 157198
Nhlrc2 19 56548261 to 56598846 50585 + protein coding gene NHL repeat containing 2
Tssr157199 19 56548435 to 56548512 77 + TSS region transcription start site region 157199
Tssr157200 19 56548518 to 56548543 25 + TSS region transcription start site region 157200
Tssr157201 19 56548553 to 56548572 19 + TSS region transcription start site region 157201
Tssr157202 19 56548579 to 56548623 44 + TSS region transcription start site region 157202
Tssr157203 19 56548632 to 56548684 52 + TSS region transcription start site region 157203
Tssr159874 19 56566079 to 56566127 48 - TSS region transcription start site region 159874
Tssr157204 19 56582847 to 56582864 17 + TSS region transcription start site region 157204
Tssr157205 19 56593685 to 56593696 11 + TSS region transcription start site region 157205