Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 19:5588614-5788706

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104 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi10461 19 5601693 to 5602614 921 CpG island CpG island 10461
Tssr154457 19 5601841 to 5601852 11 + TSS region transcription start site region 154457
Tssr154458 19 5601854 to 5601916 62 + TSS region transcription start site region 154458
Rnaseh2c 19 5601873 to 5602959 1086 + protein coding gene ribonuclease H2, subunit C
Kat5 19 5603014 to 5610237 7223 - protein coding gene K(lysine) acetyltransferase 5
Cpgi10462 19 5609403 to 5610432 1029 CpG island CpG island 10462
Tssr154459 19 5609840 to 5609860 20 + TSS region transcription start site region 154459
Tssr157617 19 5610038 to 5610066 28 - TSS region transcription start site region 157617
Tssr154460 19 5610065 to 5610108 43 + TSS region transcription start site region 154460
Tssr5414 19 5614052 to 5614053 1 - TSS region transcription start site region 5414
Cpgi10463 19 5636862 to 5638536 1674 CpG island CpG island 10463
Tssr157618 19 5637375 to 5637391 16 - TSS region transcription start site region 157618
Tssr154461 19 5637475 to 5637486 11 + TSS region transcription start site region 154461
Rela 19 5637483 to 5648130 10647 + protein coding gene v-rel reticuloendotheliosis viral oncogene homolog A (avian)
Tssr154462 19 5637489 to 5637500 11 + TSS region transcription start site region 154462
Tssr154463 19 5637501 to 5637517 16 + TSS region transcription start site region 154463
Tssr154464 19 5637528 to 5637548 20 + TSS region transcription start site region 154464
Tssr154465 19 5637708 to 5637730 22 + TSS region transcription start site region 154465
Tssr154466 19 5637736 to 5637766 30 + TSS region transcription start site region 154466
Tssr154467 19 5637777 to 5637778 1 + TSS region transcription start site region 154467
Tssr154468 19 5638211 to 5638214 3 + TSS region transcription start site region 154468
Tssr154469 19 5638223 to 5638226 3 + TSS region transcription start site region 154469
Tssr154470 19 5638237 to 5638263 26 + TSS region transcription start site region 154470
Tssr154471 19 5638280 to 5638306 26 + TSS region transcription start site region 154471
Tssr154472 19 5638312 to 5638313 1 + TSS region transcription start site region 154472
Tssr157619 19 5638875 to 5638885 10 - TSS region transcription start site region 157619
Tssr154473 19 5645536 to 5645550 14 + TSS region transcription start site region 154473
Tssr154474 19 5646850 to 5646860 10 + TSS region transcription start site region 154474
Cpgi10464 19 5648794 to 5649081 287 CpG island CpG island 10464
Sipa1 19 5651185 to 5663707 12522 - protein coding gene signal-induced proliferation associated gene 1
Cpgi10465 19 5653988 to 5655453 1465 CpG island CpG island 10465
Tssr157620 19 5654262 to 5654304 42 - TSS region transcription start site region 157620
Tssr157621 19 5658246 to 5658251 5 - TSS region transcription start site region 157621
Cpgi10466 19 5660735 to 5660933 198 CpG island CpG island 10466
Tssr157622 19 5661625 to 5661662 37 - TSS region transcription start site region 157622
Cpgi10467 19 5663403 to 5663837 434 CpG island CpG island 10467
Tssr157623 19 5663635 to 5663670 35 - TSS region transcription start site region 157623
Tssr157624 19 5663674 to 5663694 20 - TSS region transcription start site region 157624
Tssr157625 19 5663701 to 5663710 9 - TSS region transcription start site region 157625
Pcnx3 19 5664635 to 5688908 24273 - protein coding gene pecanex homolog 3
Mir6987 19 5679004 to 5679076 72 - miRNA gene microRNA 6987
Cpgi10468 19 5688045 to 5689083 1038 CpG island CpG island 10468
Tssr157626 19 5688540 to 5688590 50 - TSS region transcription start site region 157626
Tssr157627 19 5688614 to 5688706 92 - TSS region transcription start site region 157627
Tssr154475 19 5688723 to 5688770 47 + TSS region transcription start site region 154475
Map3k11 19 5688742 to 5702865 14123 + protein coding gene mitogen-activated protein kinase kinase kinase 11
Tssr154476 19 5688778 to 5688797 19 + TSS region transcription start site region 154476
Gm50315 19 5689236 to 5690010 774 - lncRNA gene predicted gene, 50315
Cpgi10469 19 5689487 to 5690707 1220 CpG island CpG island 10469
Tssr154477 19 5689745 to 5689823 78 + TSS region transcription start site region 154477
Tssr154478 19 5692852 to 5692874 22 + TSS region transcription start site region 154478
Cpgi10470 19 5695503 to 5696337 834 CpG island CpG island 10470
Tssr154479 19 5700770 to 5700795 25 + TSS region transcription start site region 154479
Kcnk7 19 5704367 to 5707109 2742 + protein coding gene potassium channel, subfamily K, member 7
Tssr154480 19 5704437 to 5704468 31 + TSS region transcription start site region 154480
Ehbp1l1 19 5707376 to 5726317 18941 - protein coding gene EH domain binding protein 1-like 1
Cpgi10471 19 5715883 to 5716530 647 CpG island CpG island 10471
Tssr157628 19 5719306 to 5719315 9 - TSS region transcription start site region 157628
Tssr157629 19 5720297 to 5720311 14 - TSS region transcription start site region 157629
Tssr157630 19 5720681 to 5720690 9 - TSS region transcription start site region 157630
Tssr157631 19 5720695 to 5720725 30 - TSS region transcription start site region 157631
Tssr157632 19 5721811 to 5721853 42 - TSS region transcription start site region 157632
Tssr154481 19 5724812 to 5724829 17 + TSS region transcription start site region 154481
Tssr154482 19 5724874 to 5724886 12 + TSS region transcription start site region 154482
Cpgi10472 19 5725953 to 5726559 606 CpG island CpG island 10472
Tssr157633 19 5726214 to 5726227 13 - TSS region transcription start site region 157633
Tssr157634 19 5726240 to 5726287 47 - TSS region transcription start site region 157634
Tssr154483 19 5727170 to 5727194 24 + TSS region transcription start site region 154483
Gm16538 19 5727206 to 5731627 4421 + lncRNA gene predicted gene 16538
Tssr154484 19 5727211 to 5727225 14 + TSS region transcription start site region 154484
Fam89b 19 5728087 to 5729653 1566 - protein coding gene family with sequence similarity 89, member B
Gm50387 19 5728088 to 5731713 3625 - protein coding gene predicted gene, 50387
Cpgi10473 19 5729070 to 5730020 950 CpG island CpG island 10473
Tssr157635 19 5729357 to 5729416 59 - TSS region transcription start site region 157635
Tssr157636 19 5729512 to 5729530 18 - TSS region transcription start site region 157636
Tssr157637 19 5729618 to 5729700 82 - TSS region transcription start site region 157637
Znrd2 19 5730306 to 5731732 1426 - protein coding gene zinc ribbon domain containing 2
Cpgi10474 19 5731141 to 5731938 797 CpG island CpG island 10474
Tssr157638 19 5731489 to 5731503 14 - TSS region transcription start site region 157638
Tssr157639 19 5731697 to 5731733 36 - TSS region transcription start site region 157639
Tssr154485 19 5740885 to 5740904 19 + TSS region transcription start site region 154485
Ltbp3 19 5740904 to 5758532 17628 + protein coding gene latent transforming growth factor beta binding protein 3
Tssr154486 19 5741300 to 5741325 25 + TSS region transcription start site region 154486
Cpgi10475 19 5741483 to 5742728 1245 CpG island CpG island 10475
Tssr154487 19 5741681 to 5741701 20 + TSS region transcription start site region 154487
Tssr154488 19 5741707 to 5741729 22 + TSS region transcription start site region 154488
Tssr154489 19 5741859 to 5741887 28 + TSS region transcription start site region 154489
Tssr154490 19 5741892 to 5741902 10 + TSS region transcription start site region 154490
Tssr154491 19 5741959 to 5742015 56 + TSS region transcription start site region 154491
Tssr154492 19 5742019 to 5742036 17 + TSS region transcription start site region 154492
Tssr154493 19 5742080 to 5742085 5 + TSS region transcription start site region 154493
Tssr154494 19 5742460 to 5742472 12 + TSS region transcription start site region 154494
Cpgi10476 19 5745487 to 5746118 631 CpG island CpG island 10476
Tssr154495 19 5747743 to 5747753 10 + TSS region transcription start site region 154495
Cpgi10477 19 5751102 to 5752126 1024 CpG island CpG island 10477
Cpgi10478 19 5756613 to 5758217 1604 CpG island CpG island 10478
Scyl1 19 5758422 to 5771419 12997 - protein coding gene SCY1-like 1 (S. cerevisiae)
ocd 19 5758427 to 9933333 4174906 heritable phenotypic marker osteochondrodystrophy
Cpgi10479 19 5770502 to 5771572 1070 CpG island CpG island 10479
Tssr157640 19 5771270 to 5771301 31 - TSS region transcription start site region 157640
Tssr157641 19 5771343 to 5771371 28 - TSS region transcription start site region 157641
Tssr157642 19 5771376 to 5771408 32 - TSS region transcription start site region 157642
Tssr157643 19 5771412 to 5771423 11 - TSS region transcription start site region 157643
Tssr157644 19 5771618 to 5771640 22 - TSS region transcription start site region 157644