Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:5588403-5738837

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi10461 19 5601693 to 5602614 921 CpG island CpG island 10461
Tssr154457 19 5601841 to 5601852 11 + TSS region transcription start site region 154457
Tssr154458 19 5601854 to 5601916 62 + TSS region transcription start site region 154458
Rnaseh2c 19 5601873 to 5602959 1086 + protein coding gene ribonuclease H2, subunit C
Kat5 19 5603017 to 5610094 7077 - protein coding gene K(lysine) acetyltransferase 5
Cpgi10462 19 5609403 to 5610432 1029 CpG island CpG island 10462
Tssr154459 19 5609840 to 5609860 20 + TSS region transcription start site region 154459
Tssr157617 19 5610038 to 5610066 28 - TSS region transcription start site region 157617
Tssr154460 19 5610065 to 5610108 43 + TSS region transcription start site region 154460
Tssr5414 19 5614052 to 5614053 1 - TSS region transcription start site region 5414
Cpgi10463 19 5636862 to 5638536 1674 CpG island CpG island 10463
Tssr157618 19 5637375 to 5637391 16 - TSS region transcription start site region 157618
Tssr154461 19 5637475 to 5637486 11 + TSS region transcription start site region 154461
Rela 19 5637483 to 5648130 10647 + protein coding gene v-rel reticuloendotheliosis viral oncogene homolog A (avian)
Tssr154462 19 5637489 to 5637500 11 + TSS region transcription start site region 154462
Tssr154463 19 5637501 to 5637517 16 + TSS region transcription start site region 154463
Tssr154464 19 5637528 to 5637548 20 + TSS region transcription start site region 154464
Tssr154465 19 5637708 to 5637730 22 + TSS region transcription start site region 154465
Tssr154466 19 5637736 to 5637766 30 + TSS region transcription start site region 154466
Tssr154467 19 5637777 to 5637778 1 + TSS region transcription start site region 154467
Tssr154468 19 5638211 to 5638214 3 + TSS region transcription start site region 154468
Tssr154469 19 5638223 to 5638226 3 + TSS region transcription start site region 154469
Tssr154470 19 5638237 to 5638263 26 + TSS region transcription start site region 154470
Tssr154471 19 5638280 to 5638306 26 + TSS region transcription start site region 154471
Tssr154472 19 5638312 to 5638313 1 + TSS region transcription start site region 154472
Tssr157619 19 5638875 to 5638885 10 - TSS region transcription start site region 157619
Tssr154473 19 5645536 to 5645550 14 + TSS region transcription start site region 154473
Tssr154474 19 5646850 to 5646860 10 + TSS region transcription start site region 154474
Cpgi10464 19 5648794 to 5649081 287 CpG island CpG island 10464
Sipa1 19 5651185 to 5663707 12522 - protein coding gene signal-induced proliferation associated gene 1
Cpgi10465 19 5653988 to 5655453 1465 CpG island CpG island 10465
Tssr157620 19 5654262 to 5654304 42 - TSS region transcription start site region 157620
Tssr157621 19 5658246 to 5658251 5 - TSS region transcription start site region 157621
Cpgi10466 19 5660735 to 5660933 198 CpG island CpG island 10466
Tssr157622 19 5661625 to 5661662 37 - TSS region transcription start site region 157622
Cpgi10467 19 5663403 to 5663837 434 CpG island CpG island 10467
Tssr157623 19 5663635 to 5663670 35 - TSS region transcription start site region 157623
Tssr157624 19 5663674 to 5663694 20 - TSS region transcription start site region 157624
Tssr157625 19 5663701 to 5663710 9 - TSS region transcription start site region 157625
Pcnx3 19 5664635 to 5688908 24273 - protein coding gene pecanex homolog 3
Mir6987 19 5679004 to 5679076 72 - miRNA gene microRNA 6987
Cpgi10468 19 5688045 to 5689083 1038 CpG island CpG island 10468
Tssr157626 19 5688540 to 5688590 50 - TSS region transcription start site region 157626
Tssr157627 19 5688614 to 5688706 92 - TSS region transcription start site region 157627
Tssr154475 19 5688723 to 5688770 47 + TSS region transcription start site region 154475
Tssr154476 19 5688778 to 5688797 19 + TSS region transcription start site region 154476
Map3k11 19 5689131 to 5702862 13731 + protein coding gene mitogen-activated protein kinase kinase kinase 11
Cpgi10469 19 5689487 to 5690707 1220 CpG island CpG island 10469
Tssr154477 19 5689745 to 5689823 78 + TSS region transcription start site region 154477
Tssr154478 19 5692852 to 5692874 22 + TSS region transcription start site region 154478
Cpgi10470 19 5695503 to 5696337 834 CpG island CpG island 10470
Tssr154479 19 5700770 to 5700795 25 + TSS region transcription start site region 154479
Kcnk7 19 5704367 to 5707101 2734 + protein coding gene potassium channel, subfamily K, member 7
Tssr154480 19 5704437 to 5704468 31 + TSS region transcription start site region 154480
Ehbp1l1 19 5707376 to 5726317 18941 - protein coding gene EH domain binding protein 1-like 1
Cpgi10471 19 5715883 to 5716530 647 CpG island CpG island 10471
Tssr157628 19 5719306 to 5719315 9 - TSS region transcription start site region 157628
Tssr157629 19 5720297 to 5720311 14 - TSS region transcription start site region 157629
Tssr157630 19 5720681 to 5720690 9 - TSS region transcription start site region 157630
Tssr157631 19 5720695 to 5720725 30 - TSS region transcription start site region 157631
Tssr157632 19 5721811 to 5721853 42 - TSS region transcription start site region 157632
Tssr154481 19 5724812 to 5724829 17 + TSS region transcription start site region 154481
Tssr154482 19 5724874 to 5724886 12 + TSS region transcription start site region 154482
Cpgi10472 19 5725953 to 5726559 606 CpG island CpG island 10472
Tssr157633 19 5726214 to 5726227 13 - TSS region transcription start site region 157633
Tssr157634 19 5726240 to 5726287 47 - TSS region transcription start site region 157634
Tssr154483 19 5727170 to 5727194 24 + TSS region transcription start site region 154483
Gm16538 19 5727206 to 5731627 4421 + antisense lncRNA gene predicted gene 16538
Tssr154484 19 5727211 to 5727225 14 + TSS region transcription start site region 154484
Fam89b 19 5728087 to 5729653 1566 - protein coding gene family with sequence similarity 89, member B
Cpgi10473 19 5729070 to 5730020 950 CpG island CpG island 10473
Tssr157635 19 5729357 to 5729416 59 - TSS region transcription start site region 157635
Tssr157636 19 5729512 to 5729530 18 - TSS region transcription start site region 157636
Tssr157637 19 5729618 to 5729700 82 - TSS region transcription start site region 157637
Sssca1 19 5730306 to 5731732 1426 - protein coding gene Sjogren syndrome/scleroderma autoantigen 1
Cpgi10474 19 5731141 to 5731938 797 CpG island CpG island 10474
Tssr157638 19 5731489 to 5731503 14 - TSS region transcription start site region 157638
Tssr157639 19 5731697 to 5731733 36 - TSS region transcription start site region 157639