Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:55626924-55856935

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vti1a 19 55316295 to 55627309 311014 + protein coding gene vesicle transport through interaction with t-SNAREs 1A
Cpgi11080 19 55628044 to 55628388 344 CpG island CpG island 11080
4930552P12Rik 19 55640589 to 55702204 61615 - lincRNA gene RIKEN cDNA 4930552P12 gene
Gm41871 19 55701143 to 55702134 991 + lncRNA gene predicted gene, 41871
Tssr159861 19 55718966 to 55718970 4 - TSS region transcription start site region 159861
Cpgi11081 19 55729821 to 55730109 288 CpG island CpG island 11081
Gm31734 19 55734407 to 55743225 8818 - lncRNA gene predicted gene, 31734
Cpgi11082 19 55741267 to 55741976 709 CpG island CpG island 11082
Tssr157094 19 55741788 to 55741797 9 + TSS region transcription start site region 157094
Tssr157095 19 55741810 to 55741842 32 + TSS region transcription start site region 157095
Tcf7l2 19 55741810 to 55933654 191844 + protein coding gene transcription factor 7 like 2, T cell specific, HMG box
Tssr157096 19 55741908 to 55741919 11 + TSS region transcription start site region 157096
Tssr157097 19 55741924 to 55741935 11 + TSS region transcription start site region 157097
Tssr157098 19 55742056 to 55742066 10 + TSS region transcription start site region 157098
Tssr157099 19 55742280 to 55742303 23 + TSS region transcription start site region 157099
Cpgi11083 19 55742306 to 55744427 2121 CpG island CpG island 11083
Tssr157100 19 55742771 to 55742784 13 + TSS region transcription start site region 157100
Tssr157101 19 55743100 to 55743135 35 + TSS region transcription start site region 157101
Tssr157102 19 55743139 to 55743162 23 + TSS region transcription start site region 157102
Tssr159862 19 55743193 to 55743220 27 - TSS region transcription start site region 159862
Tssr157103 19 55743409 to 55743437 28 + TSS region transcription start site region 157103
Cpgi11084 19 55787505 to 55787686 181 CpG island CpG island 11084
Tssr157104 19 55800905 to 55800909 4 + TSS region transcription start site region 157104
Tssr157105 19 55804368 to 55804372 4 + TSS region transcription start site region 157105
Tssr157106 19 55832746 to 55832757 11 + TSS region transcription start site region 157106
Tssr157107 19 55832874 to 55832888 14 + TSS region transcription start site region 157107
Tssr157108 19 55837828 to 55837831 3 + TSS region transcription start site region 157108
Ppnr 19 55841672 to 55845897 4225 + sense intronic lncRNA gene per-pentamer repeat gene
Tssr157109 19 55845946 to 55845973 27 + TSS region transcription start site region 157109