Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:55626127-56506140

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vti1a 19 55316295 to 55627309 311014 + protein coding gene vesicle transport through interaction with t-SNAREs 1A
Cpgi11080 19 55628044 to 55628388 344 CpG island CpG island 11080
4930552P12Rik 19 55640589 to 55702204 61615 - lincRNA gene RIKEN cDNA 4930552P12 gene
Gm41871 19 55701143 to 55702134 991 + lncRNA gene predicted gene, 41871
Tssr159861 19 55718966 to 55718970 4 - TSS region transcription start site region 159861
Cpgi11081 19 55729821 to 55730109 288 CpG island CpG island 11081
Gm31734 19 55734407 to 55743225 8818 - lncRNA gene predicted gene, 31734
Cpgi11082 19 55741267 to 55741976 709 CpG island CpG island 11082
Tssr157094 19 55741788 to 55741797 9 + TSS region transcription start site region 157094
Tssr157095 19 55741810 to 55741842 32 + TSS region transcription start site region 157095
Tcf7l2 19 55741810 to 55933654 191844 + protein coding gene transcription factor 7 like 2, T cell specific, HMG box
Tssr157096 19 55741908 to 55741919 11 + TSS region transcription start site region 157096
Tssr157097 19 55741924 to 55741935 11 + TSS region transcription start site region 157097
Tssr157098 19 55742056 to 55742066 10 + TSS region transcription start site region 157098
Tssr157099 19 55742280 to 55742303 23 + TSS region transcription start site region 157099
Cpgi11083 19 55742306 to 55744427 2121 CpG island CpG island 11083
Tssr157100 19 55742771 to 55742784 13 + TSS region transcription start site region 157100
Tssr157101 19 55743100 to 55743135 35 + TSS region transcription start site region 157101
Tssr157102 19 55743139 to 55743162 23 + TSS region transcription start site region 157102
Tssr159862 19 55743193 to 55743220 27 - TSS region transcription start site region 159862
Tssr157103 19 55743409 to 55743437 28 + TSS region transcription start site region 157103
Cpgi11084 19 55787505 to 55787686 181 CpG island CpG island 11084
Tssr157104 19 55800905 to 55800909 4 + TSS region transcription start site region 157104
Tssr157105 19 55804368 to 55804372 4 + TSS region transcription start site region 157105
Tssr157106 19 55832746 to 55832757 11 + TSS region transcription start site region 157106
Tssr157107 19 55832874 to 55832888 14 + TSS region transcription start site region 157107
Tssr157108 19 55837828 to 55837831 3 + TSS region transcription start site region 157108
Ppnr 19 55841672 to 55845897 4225 + sense intronic lncRNA gene per-pentamer repeat gene
Tssr157109 19 55845946 to 55845973 27 + TSS region transcription start site region 157109
Tssr157110 19 55868191 to 55868194 3 + TSS region transcription start site region 157110
Tssr157111 19 55885885 to 55885901 16 + TSS region transcription start site region 157111
Tssr157112 19 55888932 to 55888943 11 + TSS region transcription start site region 157112
Tssr157113 19 55892673 to 55892684 11 + TSS region transcription start site region 157113
Tssr157114 19 55892690 to 55892699 9 + TSS region transcription start site region 157114
Tssr5560 19 55892724 to 55892729 5 + TSS region transcription start site region 5560
Tssr157115 19 55892740 to 55892744 4 + TSS region transcription start site region 157115
Tssr157116 19 55892929 to 55892934 5 + TSS region transcription start site region 157116
Tssr157117 19 55893124 to 55893131 7 + TSS region transcription start site region 157117
Tssr157118 19 55893145 to 55893154 9 + TSS region transcription start site region 157118
Tssr5561 19 55893210 to 55893214 4 + TSS region transcription start site region 5561
Tssr157119 19 55893286 to 55893291 5 + TSS region transcription start site region 157119
Tssr157120 19 55893313 to 55893344 31 + TSS region transcription start site region 157120
Tssr157121 19 55893352 to 55893388 36 + TSS region transcription start site region 157121
Tssr157122 19 55893393 to 55893398 5 + TSS region transcription start site region 157122
Tssr5562 19 55893400 to 55893405 5 + TSS region transcription start site region 5562
Tssr157123 19 55894337 to 55894378 41 + TSS region transcription start site region 157123
Tssr157124 19 55894447 to 55894461 14 + TSS region transcription start site region 157124
Tssr157125 19 55894472 to 55894475 3 + TSS region transcription start site region 157125
Tssr157126 19 55894477 to 55894501 24 + TSS region transcription start site region 157126
Tssr157127 19 55894508 to 55894521 13 + TSS region transcription start site region 157127
Tssr157128 19 55894606 to 55894615 9 + TSS region transcription start site region 157128
Tssr157129 19 55894914 to 55894927 13 + TSS region transcription start site region 157129
Tssr157130 19 55894948 to 55894960 12 + TSS region transcription start site region 157130
Tssr157131 19 55895145 to 55895154 9 + TSS region transcription start site region 157131
Tssr157132 19 55895156 to 55895175 19 + TSS region transcription start site region 157132
Tssr157133 19 55895197 to 55895224 27 + TSS region transcription start site region 157133
Cpgi11085 19 55895388 to 55895769 381 CpG island CpG island 11085
Tssr157134 19 55895397 to 55895414 17 + TSS region transcription start site region 157134
Tssr157135 19 55895433 to 55895454 21 + TSS region transcription start site region 157135
Tssr157136 19 55895456 to 55895483 27 + TSS region transcription start site region 157136
Tssr157137 19 55895490 to 55895497 7 + TSS region transcription start site region 157137
Tssr157138 19 55895508 to 55895511 3 + TSS region transcription start site region 157138
Tssr157139 19 55895557 to 55895566 9 + TSS region transcription start site region 157139
Tssr157140 19 55895570 to 55895581 11 + TSS region transcription start site region 157140
Tssr157141 19 55895582 to 55895591 9 + TSS region transcription start site region 157141
Tssr157142 19 55896415 to 55896420 5 + TSS region transcription start site region 157142
Tssr157143 19 55897913 to 55897931 18 + TSS region transcription start site region 157143
Tssr157144 19 55897941 to 55897950 9 + TSS region transcription start site region 157144
Tssr157145 19 55897951 to 55897966 15 + TSS region transcription start site region 157145
Tssr157146 19 55898263 to 55898274 11 + TSS region transcription start site region 157146
Tssr157147 19 55898277 to 55898289 12 + TSS region transcription start site region 157147
Tssr157148 19 55898596 to 55898606 10 + TSS region transcription start site region 157148
Tssr157149 19 55898945 to 55898978 33 + TSS region transcription start site region 157149
Tssr157150 19 55908433 to 55908479 46 + TSS region transcription start site region 157150
Tssr157151 19 55908505 to 55908517 12 + TSS region transcription start site region 157151
Tssr157152 19 55910559 to 55910577 18 + TSS region transcription start site region 157152
Tssr157153 19 55910584 to 55910595 11 + TSS region transcription start site region 157153
Tssr159863 19 55910609 to 55910652 43 - TSS region transcription start site region 159863
Tssr157154 19 55910631 to 55910652 21 + TSS region transcription start site region 157154
Tssr157155 19 55912589 to 55912608 19 + TSS region transcription start site region 157155
Tssr157156 19 55917348 to 55917362 14 + TSS region transcription start site region 157156
Tssr157157 19 55917367 to 55917377 10 + TSS region transcription start site region 157157
Tssr157158 19 55919502 to 55919518 16 + TSS region transcription start site region 157158
Tssr157159 19 55925933 to 55925947 14 + TSS region transcription start site region 157159
Tssr157160 19 55925951 to 55925979 28 + TSS region transcription start site region 157160
Tssr157161 19 55930469 to 55930475 6 + TSS region transcription start site region 157161
Tssr157162 19 55931464 to 55931480 16 + TSS region transcription start site region 157162
Tssr157163 19 55931497 to 55931530 33 + TSS region transcription start site region 157163
Cpgi11086 19 55931528 to 55931797 269 CpG island CpG island 11086
Tssr157164 19 55931703 to 55931716 13 + TSS region transcription start site region 157164
Tssr157165 19 55932299 to 55932325 26 + TSS region transcription start site region 157165
Tssr157166 19 55932375 to 55932379 4 + TSS region transcription start site region 157166
Tssr157167 19 55932490 to 55932503 13 + TSS region transcription start site region 157167
Tssr157168 19 55932742 to 55932746 4 + TSS region transcription start site region 157168
Tssr157169 19 55933172 to 55933183 11 + TSS region transcription start site region 157169
Tssr157170 19 55938486 to 55938500 14 + TSS region transcription start site region 157170
Gm41872 19 55940237 to 55950980 10743 + lncRNA gene predicted gene, 41872
Tssr157171 19 55976675 to 55976696 21 + TSS region transcription start site region 157171
Tssr157172 19 56035094 to 56035097 3 + TSS region transcription start site region 157172
1700106J12Rik 19 56066127 to 56066933 806 unclassified gene RIKEN cDNA 1700106J12 gene
Tssr157173 19 56066127 to 56066140 13 + TSS region transcription start site region 157173
Tssr157174 19 56072106 to 56072108 2 + TSS region transcription start site region 157174
Gm4470 19 56077954 to 56081392 3438 + lncRNA gene predicted gene 4470
Cpgi11087 19 56105592 to 56105784 192 CpG island CpG island 11087
Gm31912 19 56105689 to 56109342 3653 + lncRNA gene predicted gene, 31912
Gm31965 19 56155105 to 56176419 21314 + lncRNA gene predicted gene, 31965
D19Mit84 19 56162965 to 56163112 147 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 84
Gm32028 19 56177735 to 56199050 21315 + lncRNA gene predicted gene, 32028
Lfp1 19 56195632 to 56195893 261 QTL long free running period 1
D19Mit33 19 56195632 to 56195893 261 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 33
Gm32144 19 56263413 to 56266917 3504 - lncRNA gene predicted gene, 32144
Gm32257 19 56273194 to 56292830 19636 - lncRNA gene predicted gene, 32257
Gm22271 19 56277518 to 56277645 127 - snoRNA gene predicted gene, 22271
Habp2 19 56287109 to 56320089 32980 + protein coding gene hyaluronic acid binding protein 2
Tssr157175 19 56287911 to 56287936 25 + TSS region transcription start site region 157175
Tssr157176 19 56287943 to 56287974 31 + TSS region transcription start site region 157176
Tssr157177 19 56319685 to 56319695 10 + TSS region transcription start site region 157177
Tssr157178 19 56319715 to 56319724 9 + TSS region transcription start site region 157178
Nrap 19 56320035 to 56390037 70002 - protein coding gene nebulin-related anchoring protein
Tssr157179 19 56362821 to 56362824 3 + TSS region transcription start site region 157179
Gm17197 19 56364262 to 56366241 1979 + antisense lncRNA gene predicted gene 17197
Tssr159864 19 56377946 to 56377963 17 - TSS region transcription start site region 159864
Tssr159865 19 56378266 to 56378270 4 - TSS region transcription start site region 159865
Tssr159866 19 56390004 to 56390007 3 - TSS region transcription start site region 159866
Tssr159867 19 56390027 to 56390043 16 - TSS region transcription start site region 159867
Cpgi11088 19 56396575 to 56397665 1090 CpG island CpG island 11088
Tssr157180 19 56396834 to 56396853 19 + TSS region transcription start site region 157180
Tssr5563 19 56397075 to 56397095 20 + TSS region transcription start site region 5563
Tssr157181 19 56397100 to 56397157 57 + TSS region transcription start site region 157181
Casp7 19 56397129 to 56442344 45215 + protein coding gene caspase 7
Tssr157182 19 56397215 to 56397226 11 + TSS region transcription start site region 157182
Tssr157183 19 56397231 to 56397265 34 + TSS region transcription start site region 157183
Tssr157184 19 56417136 to 56417158 22 + TSS region transcription start site region 157184
Tssr159868 19 56420498 to 56420503 5 - TSS region transcription start site region 159868
Tssr159869 19 56424591 to 56424592 1 - TSS region transcription start site region 159869
Tssr5564 19 56424643 to 56424660 17 - TSS region transcription start site region 5564
Tssr157185 19 56425683 to 56425694 11 + TSS region transcription start site region 157185
Tssr157186 19 56425716 to 56425742 26 + TSS region transcription start site region 157186
Tssr157187 19 56425756 to 56425771 15 + TSS region transcription start site region 157187
Tssr157188 19 56436681 to 56436712 31 + TSS region transcription start site region 157188
Tssr157189 19 56441191 to 56441205 14 + TSS region transcription start site region 157189
Tssr157190 19 56441229 to 56441238 9 + TSS region transcription start site region 157190
Gm46657 19 56442446 to 56455000 12554 - lncRNA gene predicted gene, 46657
Tssr157191 19 56461565 to 56461572 7 + TSS region transcription start site region 157191
Tssr157192 19 56461617 to 56461628 11 + TSS region transcription start site region 157192
Tssr157193 19 56461629 to 56461646 17 + TSS region transcription start site region 157193
Plekhs1 19 56461640 to 56486752 25112 + protein coding gene pleckstrin homology domain containing, family S member 1
Tssr157194 19 56461654 to 56461668 14 + TSS region transcription start site region 157194
Cpgi11089 19 56474534 to 56475114 580 CpG island CpG island 11089
Tssr157195 19 56477724 to 56477731 7 + TSS region transcription start site region 157195