Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:55397348-56437362

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151 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vti1a 19 55316295 to 55627309 311014 + protein coding gene vesicle transport through interaction with t-SNAREs 1A
Tssr157087 19 55412490 to 55412538 48 + TSS region transcription start site region 157087
Tssr157088 19 55425241 to 55425254 13 + TSS region transcription start site region 157088
Tssr157089 19 55435373 to 55435380 7 + TSS region transcription start site region 157089
D19Mit104 19 55443095 to 55443200 105 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 104
Tssr157090 19 55464774 to 55464787 13 + TSS region transcription start site region 157090
Tssr157091 19 55464789 to 55464816 27 + TSS region transcription start site region 157091
Gm4466 19 55480916 to 55484621 3705 unclassified gene predicted gene 4466
Tssr157092 19 55514244 to 55514255 11 + TSS region transcription start site region 157092
Tssr157093 19 55552808 to 55552815 7 + TSS region transcription start site region 157093
2310066F23Rik 19 55554872 to 55556182 1310 unclassified gene RIKEN cDNA 2310066F23 gene
Cpgi11079 19 55593585 to 55593750 165 CpG island CpG island 11079
Cpgi11080 19 55628044 to 55628388 344 CpG island CpG island 11080
4930552P12Rik 19 55640589 to 55702204 61615 - lincRNA gene RIKEN cDNA 4930552P12 gene
Gm41871 19 55701143 to 55702134 991 + lncRNA gene predicted gene, 41871
Tssr159861 19 55718966 to 55718970 4 - TSS region transcription start site region 159861
Cpgi11081 19 55729821 to 55730109 288 CpG island CpG island 11081
Gm31734 19 55734407 to 55743225 8818 - lncRNA gene predicted gene, 31734
Cpgi11082 19 55741267 to 55741976 709 CpG island CpG island 11082
Tssr157094 19 55741788 to 55741797 9 + TSS region transcription start site region 157094
Tssr157095 19 55741810 to 55741842 32 + TSS region transcription start site region 157095
Tcf7l2 19 55741810 to 55933654 191844 + protein coding gene transcription factor 7 like 2, T cell specific, HMG box
Tssr157096 19 55741908 to 55741919 11 + TSS region transcription start site region 157096
Tssr157097 19 55741924 to 55741935 11 + TSS region transcription start site region 157097
Tssr157098 19 55742056 to 55742066 10 + TSS region transcription start site region 157098
Tssr157099 19 55742280 to 55742303 23 + TSS region transcription start site region 157099
Cpgi11083 19 55742306 to 55744427 2121 CpG island CpG island 11083
Tssr157100 19 55742771 to 55742784 13 + TSS region transcription start site region 157100
Tssr157101 19 55743100 to 55743135 35 + TSS region transcription start site region 157101
Tssr157102 19 55743139 to 55743162 23 + TSS region transcription start site region 157102
Tssr159862 19 55743193 to 55743220 27 - TSS region transcription start site region 159862
Tssr157103 19 55743409 to 55743437 28 + TSS region transcription start site region 157103
Cpgi11084 19 55787505 to 55787686 181 CpG island CpG island 11084
Tssr157104 19 55800905 to 55800909 4 + TSS region transcription start site region 157104
Tssr157105 19 55804368 to 55804372 4 + TSS region transcription start site region 157105
Tssr157106 19 55832746 to 55832757 11 + TSS region transcription start site region 157106
Tssr157107 19 55832874 to 55832888 14 + TSS region transcription start site region 157107
Tssr157108 19 55837828 to 55837831 3 + TSS region transcription start site region 157108
Ppnr 19 55841672 to 55845897 4225 + sense intronic lncRNA gene per-pentamer repeat gene
Tssr157109 19 55845946 to 55845973 27 + TSS region transcription start site region 157109
Tssr157110 19 55868191 to 55868194 3 + TSS region transcription start site region 157110
Tssr157111 19 55885885 to 55885901 16 + TSS region transcription start site region 157111
Tssr157112 19 55888932 to 55888943 11 + TSS region transcription start site region 157112
Tssr157113 19 55892673 to 55892684 11 + TSS region transcription start site region 157113
Tssr157114 19 55892690 to 55892699 9 + TSS region transcription start site region 157114
Tssr5560 19 55892724 to 55892729 5 + TSS region transcription start site region 5560
Tssr157115 19 55892740 to 55892744 4 + TSS region transcription start site region 157115
Tssr157116 19 55892929 to 55892934 5 + TSS region transcription start site region 157116
Tssr157117 19 55893124 to 55893131 7 + TSS region transcription start site region 157117
Tssr157118 19 55893145 to 55893154 9 + TSS region transcription start site region 157118
Tssr5561 19 55893210 to 55893214 4 + TSS region transcription start site region 5561
Tssr157119 19 55893286 to 55893291 5 + TSS region transcription start site region 157119
Tssr157120 19 55893313 to 55893344 31 + TSS region transcription start site region 157120
Tssr157121 19 55893352 to 55893388 36 + TSS region transcription start site region 157121
Tssr157122 19 55893393 to 55893398 5 + TSS region transcription start site region 157122
Tssr5562 19 55893400 to 55893405 5 + TSS region transcription start site region 5562
Tssr157123 19 55894337 to 55894378 41 + TSS region transcription start site region 157123
Tssr157124 19 55894447 to 55894461 14 + TSS region transcription start site region 157124
Tssr157125 19 55894472 to 55894475 3 + TSS region transcription start site region 157125
Tssr157126 19 55894477 to 55894501 24 + TSS region transcription start site region 157126
Tssr157127 19 55894508 to 55894521 13 + TSS region transcription start site region 157127
Tssr157128 19 55894606 to 55894615 9 + TSS region transcription start site region 157128
Tssr157129 19 55894914 to 55894927 13 + TSS region transcription start site region 157129
Tssr157130 19 55894948 to 55894960 12 + TSS region transcription start site region 157130
Tssr157131 19 55895145 to 55895154 9 + TSS region transcription start site region 157131
Tssr157132 19 55895156 to 55895175 19 + TSS region transcription start site region 157132
Tssr157133 19 55895197 to 55895224 27 + TSS region transcription start site region 157133
Cpgi11085 19 55895388 to 55895769 381 CpG island CpG island 11085
Tssr157134 19 55895397 to 55895414 17 + TSS region transcription start site region 157134
Tssr157135 19 55895433 to 55895454 21 + TSS region transcription start site region 157135
Tssr157136 19 55895456 to 55895483 27 + TSS region transcription start site region 157136
Tssr157137 19 55895490 to 55895497 7 + TSS region transcription start site region 157137
Tssr157138 19 55895508 to 55895511 3 + TSS region transcription start site region 157138
Tssr157139 19 55895557 to 55895566 9 + TSS region transcription start site region 157139
Tssr157140 19 55895570 to 55895581 11 + TSS region transcription start site region 157140
Tssr157141 19 55895582 to 55895591 9 + TSS region transcription start site region 157141
Tssr157142 19 55896415 to 55896420 5 + TSS region transcription start site region 157142
Tssr157143 19 55897913 to 55897931 18 + TSS region transcription start site region 157143
Tssr157144 19 55897941 to 55897950 9 + TSS region transcription start site region 157144
Tssr157145 19 55897951 to 55897966 15 + TSS region transcription start site region 157145
Tssr157146 19 55898263 to 55898274 11 + TSS region transcription start site region 157146
Tssr157147 19 55898277 to 55898289 12 + TSS region transcription start site region 157147
Tssr157148 19 55898596 to 55898606 10 + TSS region transcription start site region 157148
Tssr157149 19 55898945 to 55898978 33 + TSS region transcription start site region 157149
Tssr157150 19 55908433 to 55908479 46 + TSS region transcription start site region 157150
Tssr157151 19 55908505 to 55908517 12 + TSS region transcription start site region 157151
Tssr157152 19 55910559 to 55910577 18 + TSS region transcription start site region 157152
Tssr157153 19 55910584 to 55910595 11 + TSS region transcription start site region 157153
Tssr159863 19 55910609 to 55910652 43 - TSS region transcription start site region 159863
Tssr157154 19 55910631 to 55910652 21 + TSS region transcription start site region 157154
Tssr157155 19 55912589 to 55912608 19 + TSS region transcription start site region 157155
Tssr157156 19 55917348 to 55917362 14 + TSS region transcription start site region 157156
Tssr157157 19 55917367 to 55917377 10 + TSS region transcription start site region 157157
Tssr157158 19 55919502 to 55919518 16 + TSS region transcription start site region 157158
Tssr157159 19 55925933 to 55925947 14 + TSS region transcription start site region 157159
Tssr157160 19 55925951 to 55925979 28 + TSS region transcription start site region 157160
Tssr157161 19 55930469 to 55930475 6 + TSS region transcription start site region 157161
Tssr157162 19 55931464 to 55931480 16 + TSS region transcription start site region 157162
Tssr157163 19 55931497 to 55931530 33 + TSS region transcription start site region 157163
Cpgi11086 19 55931528 to 55931797 269 CpG island CpG island 11086
Tssr157164 19 55931703 to 55931716 13 + TSS region transcription start site region 157164
Tssr157165 19 55932299 to 55932325 26 + TSS region transcription start site region 157165
Tssr157166 19 55932375 to 55932379 4 + TSS region transcription start site region 157166
Tssr157167 19 55932490 to 55932503 13 + TSS region transcription start site region 157167
Tssr157168 19 55932742 to 55932746 4 + TSS region transcription start site region 157168
Tssr157169 19 55933172 to 55933183 11 + TSS region transcription start site region 157169
Tssr157170 19 55938486 to 55938500 14 + TSS region transcription start site region 157170
Gm41872 19 55940237 to 55950980 10743 + lncRNA gene predicted gene, 41872
Tssr157171 19 55976675 to 55976696 21 + TSS region transcription start site region 157171
Tssr157172 19 56035094 to 56035097 3 + TSS region transcription start site region 157172
Tssr157173 19 56066127 to 56066140 13 + TSS region transcription start site region 157173
1700106J12Rik 19 56066127 to 56066933 806 unclassified gene RIKEN cDNA 1700106J12 gene
Tssr157174 19 56072106 to 56072108 2 + TSS region transcription start site region 157174
Gm4470 19 56077954 to 56081392 3438 + lncRNA gene predicted gene 4470
Cpgi11087 19 56105592 to 56105784 192 CpG island CpG island 11087
Gm31912 19 56105689 to 56109342 3653 + lncRNA gene predicted gene, 31912
Gm31965 19 56155105 to 56176419 21314 + lncRNA gene predicted gene, 31965
D19Mit84 19 56162965 to 56163112 147 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 84
Gm32028 19 56177735 to 56199050 21315 + lncRNA gene predicted gene, 32028
D19Mit33 19 56195632 to 56195893 261 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 33
Lfp1 19 56195632 to 56195893 261 QTL long free running period 1
Gm32144 19 56263413 to 56266917 3504 - lncRNA gene predicted gene, 32144
Gm32257 19 56273194 to 56292830 19636 - lncRNA gene predicted gene, 32257
Gm22271 19 56277518 to 56277645 127 - snoRNA gene predicted gene, 22271
Habp2 19 56287109 to 56320089 32980 + protein coding gene hyaluronic acid binding protein 2
Tssr157175 19 56287911 to 56287936 25 + TSS region transcription start site region 157175
Tssr157176 19 56287943 to 56287974 31 + TSS region transcription start site region 157176
Tssr157177 19 56319685 to 56319695 10 + TSS region transcription start site region 157177
Tssr157178 19 56319715 to 56319724 9 + TSS region transcription start site region 157178
Nrap 19 56320035 to 56390037 70002 - protein coding gene nebulin-related anchoring protein
Tssr157179 19 56362821 to 56362824 3 + TSS region transcription start site region 157179
Gm17197 19 56364262 to 56366241 1979 + antisense lncRNA gene predicted gene 17197
Tssr159864 19 56377946 to 56377963 17 - TSS region transcription start site region 159864
Tssr159865 19 56378266 to 56378270 4 - TSS region transcription start site region 159865
Tssr159866 19 56390004 to 56390007 3 - TSS region transcription start site region 159866
Tssr159867 19 56390027 to 56390043 16 - TSS region transcription start site region 159867
Cpgi11088 19 56396575 to 56397665 1090 CpG island CpG island 11088
Tssr157180 19 56396834 to 56396853 19 + TSS region transcription start site region 157180
Tssr5563 19 56397075 to 56397095 20 + TSS region transcription start site region 5563
Tssr157181 19 56397100 to 56397157 57 + TSS region transcription start site region 157181
Casp7 19 56397129 to 56442344 45215 + protein coding gene caspase 7
Tssr157182 19 56397215 to 56397226 11 + TSS region transcription start site region 157182
Tssr157183 19 56397231 to 56397265 34 + TSS region transcription start site region 157183
Tssr157184 19 56417136 to 56417158 22 + TSS region transcription start site region 157184
Tssr159868 19 56420498 to 56420503 5 - TSS region transcription start site region 159868
Tssr159869 19 56424591 to 56424592 1 - TSS region transcription start site region 159869
Tssr5564 19 56424643 to 56424660 17 - TSS region transcription start site region 5564
Tssr157185 19 56425683 to 56425694 11 + TSS region transcription start site region 157185
Tssr157186 19 56425716 to 56425742 26 + TSS region transcription start site region 157186
Tssr157187 19 56425756 to 56425771 15 + TSS region transcription start site region 157187
Tssr157188 19 56436681 to 56436712 31 + TSS region transcription start site region 157188